Predicted mutation
evidence seq id position mutation annotation gene description
RA CP000730 76,969 G→A intergenic (+1027/‑107) USA300HOU_0072 → / → USA300HOU_0075 universal stress protein/lysophospholipase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP00073076,9690GA99.2% 378.4 / NA 122intergenic (+1027/‑107)USA300HOU_0072/USA300HOU_0075universal stress protein/lysophospholipase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base A (52/67);  minor base C (0/1);  total (53/69)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 123 total aligned reads displayed.

GCAGGTCTCTTCAGATCTACGGATTTTCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAGGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATAAAATTTATTGAGTCAAAAGATAAT  >  CP000730/76824‑77111
                                                                                                                                                 |                                                                                                                                              
     tctcTGCAGATCTGCGGATTTTCGCCATGCCACGAAACTAGCATCATGCTAGCAAGGTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAAt                                                                                                                                         <  2:207630/148‑1 (MQ=17)
      ctctTCAGATCTACGGATTTTCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAAtt                                                                                                                                        <  1:1067184/148‑1 (MQ=255)
       tctTCAGATCTACGGATTTTCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAAttt                                                                                                                                       <  2:704372/148‑1 (MQ=255)
       tattaaGATCTACGGATTCTCGCCAAGACACGAAATTAGAAACATGCTAGCAAGTTTAGCGAACACTGACATGAAAAATTAGAATTCAGCTATATTTTTATACTTAGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGATAAttt                                                                                                                                       <  2:407165/143‑1 (MQ=255)
         ttCAGATCTACGGATTTTCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAGCGAAGACTGACATGATAAATTAGTGGTTAACTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTtat                                                                                                                                     >  1:806607/1‑148 (MQ=255)
         ttCAGATCTACGGATTTTCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTtat                                                                                                                                     <  1:496125/148‑1 (MQ=255)
         ttCAGATCTACGGATTTTCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTtat                                                                                                                                     >  2:67524/1‑148 (MQ=255)
         ttCAGATCTACGGATTTTCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGCGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTtat                                                                                                                                     <  1:359035/148‑1 (MQ=255)
          tCAGATCTACGGATTTTCGCCAGGCCACGAAATTAGCATCATGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTCTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTtata                                                                                                                                    <  1:155675/148‑1 (MQ=255)
            aGATCTACGGATTTTCGCCATGCCACGAAATTAGTATCAAGTTAGCAAGGTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTtatata                                                                                                                                  <  1:534851/148‑1 (MQ=17)
            aGATCTACGGATTTTCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTtatata                                                                                                                                  <  2:896918/148‑1 (MQ=255)
            aGATCTACGGATTTTCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTtatata                                                                                                                                  <  2:778116/148‑1 (MQ=255)
             gATCTACGGATTTTCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAGCGAACACTGACCTGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAg                                                                                                                                 <  2:905565/148‑1 (MQ=255)
             gATCTACGGATTTTCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAg                                                                                                                                 <  1:1061119/148‑1 (MQ=255)
             aaTCTACGGATTTTCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAg                                                                                                                                 <  2:1053034/147‑1 (MQ=255)
              aTCTACGGATTTTCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGt                                                                                                                                >  1:995771/1‑148 (MQ=255)
              aTCTACGGAATTTCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTAACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGt                                                                                                                                <  2:806571/148‑1 (MQ=255)
                 tACGGATTTTCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTAtt                                                                                                                             <  1:787274/148‑1 (MQ=255)
                  aCGGATTTTCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTa                                                                                                                            <  1:399876/148‑1 (MQ=255)
                            gCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACAt                                                                                                                  >  2:428658/1‑148 (MQ=255)
                             ccATGCCACGAAATTAGCATCATGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACAtt                                                                                                                 <  2:485838/148‑1 (MQ=255)
                                   cACGAAATTAGCATCATGCTAGCAAGTTGAGTGAACACTGACATGATAAATTAGTGGTTATCTATATTTTTTTACTTTGCAAGAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTg                                                                                                           <  2:431481/148‑1 (MQ=21)
                                           tAGCATCCTGCGAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGCACCTGTAAGGAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCaaaa                                                                                                   <  1:541524/148‑1 (MQ=21)
                                           tAGCATCATGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGTACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCaaaa                                                                                                   <  1:541408/148‑1 (MQ=255)
                                              catcatGCTAGCAAGTTAATCGAACACTGACATGATAAATTAGGGGTTAGCTATATTTTTTTACTTTGCAACGGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTGGATATTATTACTGCAAACATTGATTTGGGTCAAAAAtt                                                                                                <  1:663439/148‑1 (MQ=25)
                                              catcatGCGAGCAAGTTAAGCTAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAAtt                                                                                                <  1:712376/148‑1 (MQ=255)
                                                tcatGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAGGTTAATTTATATAGTATTACTGCAACCATTGATTTGGGTCAAAAATTAgg                                                                                             >  2:296938/1‑148 (MQ=255)
                                                  atGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAggg                                                                                            <  1:166723/148‑1 (MQ=255)
                                                    tgtAGCAAGTTAAGCGAACATTGACATGATAAATTATTGGTTAGCTAAATTTTTTTACTTTGCAACAGAACCTATAAAAAACATCTGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGt                                                                                          <  2:609122/146‑1 (MQ=25)
                                                     cTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGTTACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTa                                                                                         >  2:1124108/1‑148 (MQ=255)
                                                          aaGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTaaa                                                                                    >  2:745030/1‑148 (MQ=255)
                                                             ttAAGCGAACGCTGACACGATATATTAGTGGTTAGCGATATTTTTTTACTTTGCAACATAACCTATAAAAAACATGAGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGTTTTGGGTCTAAATTTAGGGGTATTaaaaaa                                                                                 <  2:845425/148‑1 (MQ=37)
                                                             ttAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAATAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTaaaaaa                                                                                 <  2:715461/148‑1 (MQ=255)
                                                             ttAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTaaaaaa                                                                                 <  1:1195157/148‑1 (MQ=255)
                                                                  cGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAaatgaa                                                                            >  2:276099/1‑148 (MQ=255)
                                                                    aaCACTGATATTATAAATTAGTTGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAaatgaatg                                                                          <  1:960630/148‑1 (MQ=255)
                                                                       ccTGACCTAAAAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAAACTATAAAAAACATGGGCTTAAAAGGTTAAGTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATgaatgaat                                                                       <  1:576434/147‑1 (MQ=38)
                                                                                aTAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAAtttt                                                              >  2:898889/1‑148 (MQ=255)
                                                                                aTAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAAtttt                                                              <  1:85176/148‑1 (MQ=255)
                                                                                aTAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTCGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAAtttt                                                              <  1:800994/148‑1 (MQ=255)
                                                                                 tAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAAGGGTATTAAAAAAATGAATGAATAATAATTTTa                                                             >  2:372497/1‑148 (MQ=255)
                                                                                 tAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATAAGGGGTATTAAAAAAATAAATGAATAATAAttttt                                                             >  2:689817/1‑147 (MQ=255)
                                                                                   acttAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATc                                                           <  1:572392/146‑1 (MQ=255)
                                                                                   aaTTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATc                                                           <  1:348508/148‑1 (MQ=255)
                                                                                    aTTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCa                                                          <  1:262293/148‑1 (MQ=255)
                                                                                    aTTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCa                                                          <  1:254089/148‑1 (MQ=255)
                                                                                    aTTAGTGGTTAGCCATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCa                                                          <  1:1013841/148‑1 (MQ=255)
                                                                                       aGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGTGCAAAAATTAGGGGGATTAAAAAAATGAATGAATGATAGTTTTATCAAGc                                                       >  1:246295/1‑148 (MQ=39)
                                                                                           gtcagccctatTTTTTTACTTTTCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATAATAATTTTATCAAGCGGAt                                                   >  2:1148277/9‑148 (MQ=255)
                                                                                           gTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATACTTTTATCAAGCTGAt                                                   >  2:1198876/1‑148 (MQ=255)
                                                                                            ttAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTCTTACTGCAAACATTGCTTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGCATCATAATTTTTTCCAGCTGAtt                                                  >  1:871286/1‑148 (MQ=255)
                                                                                               gCTATATTTTTTTACTTTGCAACAGAACCTATGAACAACAGGAGGCCAAAAGGTTGATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAAAAAAAAAAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGga                                               <  2:746425/148‑1 (MQ=255)
                                                                                               gCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGga                                               <  1:1252837/148‑1 (MQ=255)
                                                                                               gCTATATTTTTTTACTTTGCAACAAAACCTAGAAAAAACAGGGGCTTAAAAGGGTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGAGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGga                                               <  2:438022/148‑1 (MQ=255)
                                                                                               aatagatTTTTTGACGTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGga                                               <  2:588634/143‑1 (MQ=255)
                                                                                                cTATATTTTCTTATTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAATGTTAATTTATATAGTATTACTGCAAACATTGAGTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGgag                                              <  1:510820/148‑1 (MQ=255)
                                                                                                  atatTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGGATGAGAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGagag                                            >  1:95866/1‑148 (MQ=255)
                                                                                                    atTTTTTTACTTTGCAACAGAACCTAAAATTAACAATGTCGTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCGGATTGGAGAGGt                                          >  1:1241934/1‑148 (MQ=255)
                                                                                                        ttttACTTTGCAACTGAACCTATAAAAAACAGTGGCTTAAAAGGTGAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTaaa                                      <  1:874769/148‑1 (MQ=255)
                                                                                                           gtcattccAACCGAACCAATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAAGATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATg                                   <  2:928375/141‑1 (MQ=255)
                                                                                                            aCTTTGCAACAGAACCTATAAAAAACATGTGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGc                                  <  1:1226813/148‑1 (MQ=255)
                                                                                                            aCTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGc                                  <  1:631065/148‑1 (MQ=255)
                                                                                                            aCTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGc                                  <  1:428658/148‑1 (MQ=255)
                                                                                                            aCTGTGCAACAGAACCTATAAAATACAGGAGCATAAATGGTTAAGTTACATAGTATTACGGCGAACAGTGACTGGGATCAAAAATTAGGGATATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGc                                  <  2:78481/148‑1 (MQ=255)
                                                                                                             cTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCa                                 <  1:463206/148‑1 (MQ=255)
                                                                                                             cTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCa                                 <  1:1169957/148‑1 (MQ=255)
                                                                                                             cTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCa                                 <  1:712733/148‑1 (MQ=255)
                                                                                                             cTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCa                                 <  1:1132369/148‑1 (MQ=255)
                                                                                                              tttGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCAt                                >  2:1082413/1‑148 (MQ=255)
                                                                                                               ttGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCAtt                               >  1:775056/1‑148 (MQ=255)
                                                                                                               ttGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCAtt                               >  2:477739/1‑148 (MQ=255)
                                                                                                                tGCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATAATAATTTTATCAAGCTGATTGTAGAGGTGAAAATGCCttt                              >  2:633425/1‑147 (MQ=255)
                                                                                                                 gCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATtat                             >  2:1179557/1‑148 (MQ=255)
                                                                                                                 gCAACAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATGGGAGAGGTTAAAATGCATtat                             >  2:145434/1‑148 (MQ=255)
                                                                                                                     cAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATaa                         >  1:499480/1‑148 (MQ=255)
                                                                                                                     cAGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATaa                         >  1:504668/1‑148 (MQ=255)
                                                                                                                      aGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATaaa                        >  2:476322/1‑148 (MQ=255)
                                                                                                                      aGAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATaaa                        >  2:46856/1‑148 (MQ=255)
                                                                                                                       gAACCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATaaaa                       >  2:1006566/1‑148 (MQ=255)
                                                                                                                         aCCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATAAAAtt                     <  1:314506/148‑1 (MQ=255)
                                                                                                                         aCCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATAAAAtt                     <  1:47578/148‑1 (MQ=255)
                                                                                                                         aCCTATAAAAAACATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATCGGACGGGTTAAAATGCATTATATAAAAtt                     >  2:311071/1‑148 (MQ=255)
                                                                                                                                aaaaaCATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGCATCATAATTTTATAAAGCTGATTGGAGAGGTTAAAATGCATTATATAAAATTTATTGAg              >  2:586680/1‑148 (MQ=255)
                                                                                                                                  aaccATGGGGTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGGATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATAAAATTTATTGAGTc            <  1:304853/145‑1 (MQ=255)
                                                                                                                                  aaaCATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATAAAATTTATTGAGTc            >  2:814158/1‑148 (MQ=255)
                                                                                                                                  aaaCATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATAAAATTTATTGAGTc            >  2:171520/1‑148 (MQ=255)
                                                                                                                                  aaaCATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATAAAATTTATTGAGTc            >  1:1068702/1‑148 (MQ=255)
                                                                                                                                  aaaCATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGATGATTGGAGAGGTTAAAATGCATTATATCAAATTTATTGAGTc            >  2:827724/1‑148 (MQ=255)
                                                                                                                                   aaCATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATATAATTTATTGAGTCa           >  2:1125088/1‑148 (MQ=255)
                                                                                                                                   aaCATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATAAAATTTATTGAGTCa           >  2:1125094/1‑148 (MQ=255)
                                                                                                                                   aaCATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATAAAATTTATTGAGTCa           <  1:745030/148‑1 (MQ=255)
                                                                                                                                   aaCATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATAAAATTGATTGAGTCa           >  1:465554/1‑148 (MQ=255)
                                                                                                                                    aCATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATAAAATTTATTGAGTCaa          <  1:849615/148‑1 (MQ=255)
                                                                                                                                    aCATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATAAAATTTATTGAGTCaa          <  1:1124108/148‑1 (MQ=255)
                                                                                                                                     cATGGGCTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATAAAATTTATTGAGTaaaa         >  2:510672/1‑148 (MQ=255)
                                                                                                                                           cTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATAAAATTTATTGAGTCAAAAGataa   >  1:1060265/1‑148 (MQ=255)
                                                                                                                                           cTTAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTGAAAATGCATTATATAAAATTTATTGAGTCAAAAGataa   >  1:95858/1‑148 (MQ=255)
                                                                                                                                            ttAAAAGGTTAATTTATATAGTGTTACTGCAGACATTGAGTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATACATTATATAAAATTTATTGAGTCGAAAGataat  >  2:662128/1‑148 (MQ=255)
                                                                                                                                            ttAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATAAAATTTATTGAGTGAAAAGataat  <  1:898889/148‑1 (MQ=255)
                                                                                                                                            ttAAAAGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATAAAATTTATTGAGTCAAAAGataat  >  2:1028413/1‑148 (MQ=255)
                                                                                                                                                 |                                                                                                                                              
GCAGGTCTCTTCAGATCTACGGATTTTCGCCATGCCACGAAATTAGCATCATGCTAGCAAGTTAAGCGAACACTGACATGATAAATTAGTGGTTAGCTATATTTTTTTACTTTGCAACAGAACCTATAAAAAACATGGGCTTAAAGGGTTAATTTATATAGTATTACTGCAAACATTGATTTGGGTCAAAAATTAGGGGTATTAAAAAAATGAATGAATCATAATTTTATCAAGCTGATTGGAGAGGTTAAAATGCATTATATAAAATTTATTGAGTCAAAAGATAAT  >  CP000730/76824‑77111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: