Predicted mutation
evidence seq id position mutation annotation gene description
RA CP000730 396,540 G→A A208T (GCA→ACA)  USA300HOU_0364 → possible lipoprotein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730396,5400GA100.0% 325.7 / NA 103A208T (GCA→ACA) USA300HOU_0364possible lipoprotein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (56/47);  total (56/47)

Only 100 of 104 total aligned reads displayed.

GCTGATACATTAGATATCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAACGGCGGTTATGAGTCATTTGAA  >  CP000730/396396‑396683
                                                                                                                                                |                                                                                                                                                
   gATACATTAGATATCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACaaa                                                                                                                                            <  1:557800/148‑1 (MQ=255)
           aGATATCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTAt                                                                                                                                    >  1:792810/1‑148 (MQ=255)
             atatCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGTGAACGTTGAAGGCACACAAAAAATTTATGa                                                                                                                                  >  2:790959/1‑148 (MQ=255)
             atatCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGa                                                                                                                                  <  2:1129971/148‑1 (MQ=255)
             atatCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGa                                                                                                                                  <  2:395701/148‑1 (MQ=255)
             atatCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGa                                                                                                                                  >  2:1123848/1‑148 (MQ=255)
             atatCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGa                                                                                                                                  >  2:1048717/1‑148 (MQ=255)
             atatCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGAGAACGTTGAAGGCACACAAAAAATTTATGa                                                                                                                                  >  2:1241601/1‑148 (MQ=255)
              tatCGTACTACAATTAATGTTACAAGGTTGTGTTTACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGATATTCATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAATGCACACGAAAAATTTATGAc                                                                                                                                 <  2:786964/148‑1 (MQ=255)
              tatCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGAc                                                                                                                                 >  2:154668/1‑148 (MQ=255)
              tatCACACCAAAATTAATGTTACAATGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAATAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGAc                                                                                                                                 <  1:971667/148‑1 (MQ=255)
               atCATACCAAAATTAATGTTACAAGGTTCTGTTGAACTATTAAATGAATTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACt                                                                                                                                <  2:1064151/148‑1 (MQ=255)
                  aTACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTAt                                                                                                                             >  2:670387/1‑148 (MQ=255)
                  aTACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTAt                                                                                                                             <  1:1225207/148‑1 (MQ=255)
                      cAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTaa                                                                                                                         >  1:286061/1‑148 (MQ=255)
                      cAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTaa                                                                                                                         >  1:830266/1‑148 (MQ=255)
                      cAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTaa                                                                                                                         <  2:767077/148‑1 (MQ=255)
                       aaatTTAATGTTACAAGGTTCTGTTGACGTATTAAATGAAGTACCCACCTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTaaa                                                                                                                        <  2:812671/148‑1 (MQ=255)
                       aaaaTTAAGGTTACCAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTaaa                                                                                                                        <  2:532978/148‑1 (MQ=255)
                        aaaTTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAAc                                                                                                                       <  2:466280/148‑1 (MQ=255)
                                 ttACAAGGTTCTGTTGACCTATGAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTag                                                                                                              <  1:1220306/148‑1 (MQ=255)
                                  tACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGCATTCTTTAACTCTATTTTcga                                                                                                             >  2:1028513/1‑148 (MQ=255)
                                  tACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATGTTaga                                                                                                             >  2:361689/1‑148 (MQ=255)
                                   aCAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCAATTTTagaa                                                                                                            >  1:937118/1‑147 (MQ=255)
                                     aaGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACCCAAAAAATTTATGACTTATTTAAACCTATTTTAGAGaa                                                                                                          >  1:1029850/1‑148 (MQ=255)
                                     aaGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATACACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGaa                                                                                                          >  1:751275/1‑148 (MQ=255)
                                      aGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACACAAAATTTATGACTTATTTAAACCTATTTTAGAGaaa                                                                                                         >  1:150203/1‑148 (MQ=255)
                                       ggTTCTGTTGACCTATTAAATTAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGaaaa                                                                                                        <  2:734217/148‑1 (MQ=255)
                                         ttCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGaaaaag                                                                                                      >  1:311467/1‑147 (MQ=255)
                                         ttCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGaaaaaa                                                                                                      >  1:574886/1‑148 (MQ=255)
                                         ttCTGTTGACCTATTAAATGAACTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGaaaaaa                                                                                                      >  2:1077033/1‑148 (MQ=255)
                                          tctgtgtgccTATTAGATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAACTTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAg                                                                                                     <  2:1067502/140‑1 (MQ=255)
                                          tCTGTTGACCAATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAg                                                                                                     <  1:22739/148‑1 (MQ=255)
                                               tGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATaaa                                                                                                <  1:1121471/148‑1 (MQ=255)
                                                gACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATaaaa                                                                                               >  1:1085888/1‑148 (MQ=255)
                                                  ccTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATaaaaaa                                                                                             <  1:1019385/148‑1 (MQ=255)
                                                     aTTAAAGGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGCAGTTGTCATTCAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTa                                                                                          >  1:908289/1‑148 (MQ=255)
                                                        aaaTGAAGTTGCAAATTATAAAAACACAGAAGAAGAAAAAATTTAATCACATACAGATTAATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCAAAAAAAAAAAAAAAAGATAAAAAATTAAGt                                                                                       <  2:22539/148‑1 (MQ=255)
                                                        aaaTGAAGTTGAAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGt                                                                                       <  2:714504/148‑1 (MQ=255)
                                                          aTGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGGATCGTAAATATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGtga                                                                                     >  1:1229093/1‑148 (MQ=255)
                                                          aTGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGtga                                                                                     >  1:331881/1‑148 (MQ=255)
                                                           tGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGtgat                                                                                    >  1:884863/1‑148 (MQ=255)
                                                           tGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGtgat                                                                                    >  2:8336/1‑148 (MQ=255)
                                                           tGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGtgat                                                                                    >  2:1026395/1‑148 (MQ=255)
                                                                 tGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAACGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTAATGATATc                                                                              >  2:225122/1‑148 (MQ=255)
                                                                    aaCTTCTAAAATCACAGGGGAAGAAGAAACTTATTCACATCCAGATTTATAGGATTTTAAAGCGAATGTTGCAGGCACACAAAAAATTTATGACTTATTTATACCTATCTTAGAGAACAAAGATAAAAAATGAAGTGAGGATATCCaa                                                                           >  2:183123/1‑148 (MQ=255)
                                                                     aCTTCTAAAATCACAGGTGAAGAAGAAATTTCTTCACATCCAGATTTATATGATTTTAAAGCGACCGTTGAAGGCACACAACAAATTTATGACTTCTTTACACCTCTTTTAGAGACGAAAGATAAAAACTTAAGTGATGAGATCCcaa                                                                          >  1:819562/1‑148 (MQ=255)
                                                                           aaaaTCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACt                                                                    >  1:726810/1‑148 (MQ=255)
                                                                              aTCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGCTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCg                                                                 >  1:236336/1‑148 (MQ=255)
                                                                               tCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGa                                                                >  2:222653/1‑148 (MQ=255)
                                                                                cacaGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGAt                                                               <  2:893717/148‑1 (MQ=255)
                                                                                     gttaaaaaaaaaTTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAATGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGt                                                          <  2:830266/139‑1 (MQ=255)
                                                                                     gTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGt                                                          <  1:440807/148‑1 (MQ=255)
                                                                                     gTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGt                                                          <  2:286061/148‑1 (MQ=255)
                                                                                     gTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGt                                                          <  1:199611/148‑1 (MQ=255)
                                                                                       gaagaagaaATTTATTCACATACAGAGTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGa                                                        <  2:574886/148‑1 (MQ=255)
                                                                                       gaacaagaaATTTATTCCCATCCAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGa                                                        <  2:311467/148‑1 (MQ=255)
                                                                                        aagaagaaATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGaa                                                       <  2:1162352/148‑1 (MQ=255)
                                                                                         agaataaATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAAt                                                      <  2:618026/148‑1 (MQ=255)
                                                                                             gaaATCTATTCACATAAAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑Aat                                                 <  1:949686/148‑1 (MQ=255)
                                                                                                 tttATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATGTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑Aattatt                                             <  1:1231597/148‑1 (MQ=255)
                                                                                                   tATTCAAATACAGATTTATATGAAAACAAAACGAACTGTAAACCCACACAAAAAATTTATTACTTATTTAAACCTATTTTATAAAAAAAAAAAAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTgg                                           <  2:1220189/148‑1 (MQ=255)
                                                                                                    aTTCACACACAGATTTATATGATTTGAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTGAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGa                                          <  2:487735/148‑1 (MQ=255)
                                                                                                     ttCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGAt                                         <  1:1054986/148‑1 (MQ=255)
                                                                                                      tCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGGCTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGCACTACGATAAAGTGAATC‑AATTAGTGtata                                        >  1:462868/1‑148 (MQ=255)
                                                                                                       cacaTACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATaa                                       <  2:119314/148‑1 (MQ=255)
                                                                                                       cacaTACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATaa                                       <  2:720094/148‑1 (MQ=255)
                                                                                                       cacaAACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATaa                                       <  2:119531/148‑1 (MQ=255)
                                                                                                         caTACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAGGTGAATC‑AATAATTGGATAAat                                     >  1:231524/1‑148 (MQ=255)
                                                                                                              tgATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATaaa                                <  2:1250071/147‑1 (MQ=255)
                                                                                                              agaaatataTGATTTTAAAGCGAACGTTGAAGGAACACAAAAAATTTATGACTTATTTAAACAAAAAAAAAAAAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATaaa                                <  2:497177/143‑1 (MQ=255)
                                                                                                              aGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGCTAAAGTGAATC‑AATTATTGtataaatataaa                                >  2:42403/1‑148 (MQ=255)
                                                                                                              aGATTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAG‑AAAAAGATAAAAAATTAAGTGATGATATCCAAATCAACTTCGATAAAGTGAATA‑AATTATTGGGAAAATATAAAg                               >  2:634587/1‑148 (MQ=255)
                                                                                                                aTTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGa                              >  2:584000/1‑148 (MQ=255)
                                                                                                                aTTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGa                              >  2:73304/1‑148 (MQ=255)
                                                                                                                aTTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGa                              >  2:843582/1‑148 (MQ=255)
                                                                                                                aTTTATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGa                              >  2:86420/1‑148 (MQ=255)
                                                                                                                  ttATATGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAACGATAAAGAATTAAGTGGTGATATCCAAATGAACTACGATAAAGTGAATC‑AATTATTGGATAACTATAAAGATa                            >  1:267290/1‑148 (MQ=255)
                                                                                                                    atatGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATaac                          <  1:154668/148‑1 (MQ=255)
                                                                                                                      atGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATaccac                        >  2:607844/1‑147 (MQ=255)
                                                                                                                       tGATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAG‑AATTCTAATTATTGGATAAATATAAAGATaacaac                       <  1:298912/148‑1 (MQ=255)
                                                                                                                        gATTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAAcg                      >  1:231723/1‑148 (MQ=255)
                                                                                                                         aTTTTAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAAcgg                     >  2:822056/1‑148 (MQ=255)
                                                                                                                          ttttAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAAcggc                    >  2:1217717/1‑148 (MQ=255)
                                                                                                                          ttttAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAAcggc                    >  1:1185088/1‑148 (MQ=255)
                                                                                                                           tttAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAAcggcg                   <  2:1226873/148‑1 (MQ=255)
                                                                                                                           tttAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAAcggcg                   <  1:476078/148‑1 (MQ=255)
                                                                                                                           tttAAAGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTATAGCCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAAcggcg                   <  2:679374/148‑1 (MQ=255)
                                                                                                                           tatAAAGTGAACGTGGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAAcggcg                   <  2:673846/146‑1 (MQ=255)
                                                                                                                             tAAAGCGAACGTTGAAGGCACACAAAAAATCTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAACGGCGGt                 <  1:534011/148‑1 (MQ=255)
                                                                                                                              aaaGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAACGGCGGtt                >  1:514154/1‑148 (MQ=255)
                                                                                                                              aaaGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAACGGCGGtt                >  1:341116/1‑148 (MQ=255)
                                                                                                                               aaGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAACGGCGGTTa               >  1:345408/1‑148 (MQ=255)
                                                                                                                                aGCGAACGTTGAAGGCACACAACAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAACGGCGGTTAt              >  1:628292/1‑148 (MQ=255)
                                                                                                                                aGCGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAACGGCGGTTAt              >  2:256868/1‑148 (MQ=255)
                                                                                                                                  cGAACGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAACGGCGGTTATgg            >  2:222816/1‑147 (MQ=255)
                                                                                                                                    aaCGTTGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGACAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAACGGCGGTTATGAgc          >  1:1237211/1‑147 (MQ=255)
                                                                                                                                    aaCGTTGAAGGCACACAAAAAATTTACGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAACGGCGGTTATGAGt          >  1:812132/1‑148 (MQ=255)
                                                                                                                                         tGAAGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAACGGCGGATATGAGTCAttt     >  2:532359/1‑148 (MQ=255)
                                                                                                                                            aGGCACACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAACGGCGGTTATGAGTCATTTGaa  >  2:788953/1‑148 (MQ=255)
                                                                                                                                                |                                                                                                                                                
GCTGATACATTAGATATCATACCAAAATTAATGTTACAAGGTTCTGTTGACCTATTAAATGAAGTTGCAACTTCTAAAATCACAGGTGAAGAAGAAATTTATTCACATACAGATTTATATGATTTTAAAGCGAACGTTGAAGGCGCACAAAAAATTTATGACTTATTTAAACCTATTTTAGAGAAAAAAGATAAAAAATTAAGTGATGATATCCAAATGAACTTCGATAAAGTGAATC‑AATTATTGGATAAATATAAAGATAACAACGGCGGTTATGAGTCATTTGAA  >  CP000730/396396‑396683

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑