mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 57 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 76,180 | 0 | C | T | 66.7% | 27.3 / 68.6 | 78 | intergenic (+238/‑896) | USA300HOU_0072/USA300HOU_0075 | universal stress protein/lysophospholipase |
| * | CP000730 | 35,876 | 0 | C | T | 65.7% | 14.8 / 98.1 | 99 | intergenic (+107/+1) | rlmH/tpn | hypothetical protein/IS431mec transposase |
| * | CP000730 | 36,479 | 0 | T | C | 65.2% | 18.6 / 56.2 | 69 | T25A (ACA→GCA) | tpn | IS431mec transposase |
| * | CP000730 | 36,315 | 0 | G | A | 64.2% | 409.0 / inf | 604 | Y79Y (TAC→TAT) | tpn | IS431mec transposase |
| * | CP000730 | 36,269 | 0 | C | T | 64.0% | 337.1 / inf | 610 | A95T (GCA→ACA) | tpn | IS431mec transposase |
| * | CP000730 | 36,413 | 0 | C | T | 63.2% | 214.3 / inf | 330 | V47I (GTC→ATC) | tpn | IS431mec transposase |
| * | CP000730 | 36,087 | 0 | A | G | 62.9% | 618.3 / inf | 615 | C155C (TGT→TGC) | tpn | IS431mec transposase |
| * | CP000730 | 36,124 | 0 | G | A | 61.5% | 286.7 / inf | 438 | A143V (GCT→GTT) | tpn | IS431mec transposase |
| * | CP000730 | 1,929,861 | 0 | T | C | 61.5% | 86.1 / 93.7 | 96 | intergenic (‑944/‑224) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 76,322 | 0 | G | A | 61.4% | 245.6 / inf | 393 | intergenic (+380/‑754) | USA300HOU_0072/USA300HOU_0075 | universal stress protein/lysophospholipase |
| * | CP000730 | 35,970 | 0 | T | C | 61.4% | 402.6 / inf | 422 | E194E (GAA→GAG) | tpn | IS431mec transposase |
| * | CP000730 | 76,353 | 0 | G | A | 60.0% | 163.5 / inf | 287 | intergenic (+411/‑723) | USA300HOU_0072/USA300HOU_0075 | universal stress protein/lysophospholipase |
| * | CP000730 | 36,444 | 0 | C | T | 59.8% | 47.2 / 238.1 | 200 | R36R (AGG→AGA) | tpn | IS431mec transposase |
| * | CP000730 | 1,929,918 | 0 | A | G | 59.8% | 89.9 / 106.1 | 102 | intergenic (‑1001/‑167) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,842 | 0 | T | . | 59.6% | 51.7 / 203.7 | 99 | intergenic (‑925/‑243) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,843 | 0 | A | . | 59.6% | 52.2 / 202.8 | 99 | intergenic (‑926/‑242) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,867 | 0 | G | T | 59.6% | 30.3 / 148.0 | 99 | intergenic (‑950/‑218) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,872 | 0 | G | A | 59.6% | 47.9 / 119.1 | 99 | intergenic (‑955/‑213) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,873 | 0 | C | A | 59.6% | 32.8 / 149.3 | 99 | intergenic (‑956/‑212) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,875 | 0 | T | C | 59.6% | 75.7 / 108.6 | 99 | intergenic (‑958/‑210) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |