Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_000913	1,529,002	0	C→A	100.0%	0.7	1	pseudogene (1101/2037 nt)	rhsE	pseudogene, Rhs family
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (0/1):  ref base (0/0):  total (0/1)

CTGGCAGAGACGCTCCAGCAGGAAGGGAGTGAGAACGGCCACGGCGTGGTGTTCCCGGCTGAACTGGTGCGGCTGCTGGACAGGCTGGAGGAAGAAATCCGGGCAGACCGCGTGAGCAGTGAAAGCCGGGCGTGGCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGTTCATTTTTACCACTGCGACCACCGGGGCCTGCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGG  >  NC_000913/1528967‑1529266                                    |                                                                                                                                                                                                                                                                         gaggcgtcgacgcgcacgagagaggggAGCGCGAAAGGGCAGGGCGTGGTGGTCCCGCGTGAACTGGCTCGGGTACTTGAGAGGCTTGAGGAAGAAGGCAGGGCAGAGGGCGTGAGCAGTGAACGCCGGGCGGGGCTTGGGGAGGGCGGGCGCAAGGTGGAGCAATCGGCCAGACAGGTGGAGCGGGAATACACAGCGGCGAGAAAAGCTCATCTTGATCACTGCGACCACCGGGGACTGCCGCTGGTGCTTATCAGCGAGGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATgg  <  2:883987/276‑1 (MQ=255)                                    |                                                                                                                                                                                                                                                                         CTGGCAGAGACGCTCCAGCAGGAAGGGAGTGAGAACGGCCACGGCGTGGTGTTCCCGGCTGAACTGGTGCGGCTGCTGGACAGGCTGGAGGAAGAAATCCGGGCAGACCGCGTGAGCAGTGAAAGCCGGGCGTGGCTTGCGCAGTGCGGGCTGACGGTGGAGCAACTGGCCAGACAGGTGGAGCCGGAATACACACCGGCGCGAAAAGTTCATTTTTACCACTGCGACCACCGGGGCCTGCCGCTGGCGCTCATCAGCGAAGACGGCAATACGGCGTGGCGCGGGGAGTATGATGAATGG  >  NC_000913/1528967‑1529266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.