Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0009133,424,2510A→C100.0% 0.8 3noncoding (2533/2904 nt)rrlD23S ribosomal RNA of rrnD operon
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (2/0):  ref base (0/1):  total (2/1)

CTTCAGGACCCTTAAAGGGTCAGGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGCTTTCAGCACTTATCTCTTCCGCATTTAGCTACCGGGCAGTGCCATTGGCATGACAACCCGAACACCAGTGATGCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCCCTCAGTTCTCCAGCGCCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCATCACCC‑TTGGGACCTACTTCAGCCCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCC  >  NC_000913/3423973‑3424491
                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                
cTTCAGGACCCTTAAAGGGTCAGGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGCTTTCAGCACTTATCTCTTCCGCATTTAGCTACCGGGCAGTGCCATTGGCTTGACAACCCGAACACCAGTGATGCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCCCTCCGTTCTCCAGCGCCCACGGCAGCTCGGGACCGAACTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCCATTTACATGGCGAACCG‑ACCACCCATTGGGACCTCCTTCAGccccctgagctgataa                                                                                                                                                                                                                            >  2:337340/1‑289 (MQ=11)
cTTCAGGACCCTTAAAGGGTCAGGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGCTTTCAGCACTTATCTCTTCCGCATTTAGCTACCGGGCAGTGCCATTGGCATGCCAACCCGAACACTAGTGATGCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCCCTCAGTTCTCCAGCGCCCACGGCCGATAGGGACCGCACTGTCTCACGACGTCCTCAACCCAGCTCGCGCACCACTTTAAATGGCGACACGCAACACAC‑TTGGGACCACCTTACGCCCCCGGAtggactga                                                                                                                                                                                                                            >  2:671822/1‑295 (MQ=11)
                                                                                                                                                                                                                          ccttcccacaccccgccactgttccACCTTCACTGGCGACCAGCACGACCC‑GTGGGACCCACTGCCGGCCCATGATGTGATGCGCCGCCACCGAGGGGCCAAACACCTCCGTCGAGATGACCTCTGGGGCGGTATCAGCCTGTGAGCCCCGGAGGACCTTGTATCCGTTGAGCGATTGCCCGTCCATTCAGCACCACCGGAGCACTCTGACCTGCTTTCGCACCTGCTCGCGCCGGCACGCTCGCAGTCAAGCGGGCTTATGCCATTGCACTAACCTCCTGATGTCCGAACAGGAGTAGcc  <  2:566440/278‑1 (MQ=2)
                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                
CTTCAGGACCCTTAAAGGGTCAGGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGCTTTCAGCACTTATCTCTTCCGCATTTAGCTACCGGGCAGTGCCATTGGCATGACAACCCGAACACCAGTGATGCGTCCACTCCGGTCCTCTCGTACTAGGAGCAGCCCCCCTCAGTTCTCCAGCGCCCACGGCAGATAGGGACCGAACTGTCTCACGACGTTCTAAACCCAGCTCGCGTACCACTTTAAATGGCGAACAGCATCACCC‑TTGGGACCTACTTCAGCCCCAGGATGTGATGAGCCGACATCGAGGTGCCAAACACCGCCGTCGATATGAACTCTTGGGCGGTATCAGCCTGTTATCCCCGGAGTACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGATTAGCC  >  NC_000913/3423973‑3424491

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.