mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 36.1% | 49.2 / 28.4 | 37 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,286 | 0 | C | T | 25.6% | 81.8 / 14.9 | 43 | intergenic (+492/+150) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 24 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381292 = | NA (NA) | 8 (0.130) | 8/580 | 6.8 | NA | noncoding (33/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381312 = | NA (NA) | noncoding (53/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 2519211 = | 70 (1.070) | 4 (0.060) | 4/576 | 8.9 | 5.9% | intergenic (+6/+46) | yfeD/gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase |
| ? | NC_000913 | 2519240 = | 60 (0.950) | intergenic (+35/+17) | yfeD/gltX | DUF1323 family putative DNA‑binding protein/glutamyl‑tRNA synthetase | |||||
| * | ? | NC_000913 | 3127017 = | 71 (1.090) | 4 (0.060) | 4/592 | 9.1 | 5.3% | coding (1005/1500 nt) | glcD | glycolate oxidase subunit, FAD‑linked |
| ? | NC_000913 | 3127054 = | 73 (1.130) | coding (968/1500 nt) | glcD | glycolate oxidase subunit, FAD‑linked | |||||
| * | ? | NC_000913 | = 3619291 | 59 (0.900) | 3 (0.050) | 3/576 | 9.6 | 7.4% | coding (100/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3619450 | 18 (0.290) | coding (259/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 4204576 | 55 (0.840) | 3 (0.050) | 3/580 | 9.7 | 5.4% | coding (1257/1326 nt) | zraR | fused DNA‑binding response regulator in two‑component regulatory system with ZraS: response regulator/sigma54 interaction protein |
| ? | NC_000913 | = 4204588 | 51 (0.800) | coding (1269/1326 nt) | zraR | fused DNA‑binding response regulator in two‑component regulatory system with ZraS: response regulator/sigma54 interaction protein | |||||
| * | ? | NC_000913 | = 1463445 | 54 (0.830) | 3 (0.050) | 3/584 | 9.7 | 5.4% | intergenic (+7/‑94) | paaK/paaX | phenylacetyl‑CoA ligase/transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl‑CoA inducer |
| ? | NC_000913 | = 1463482 | 52 (0.810) | intergenic (+44/‑57) | paaK/paaX | phenylacetyl‑CoA ligase/transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl‑CoA inducer | |||||
| * | ? | NC_000913 | 419210 = | 72 (1.100) | 3 (0.050) | 3/580 | 9.7 | 4.3% | intergenic (+26/‑381) | phoR/brnQ | sensory histidine kinase in two‑component regulatory system with PhoB/branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val |
| ? | NC_000913 | 419234 = | 65 (1.030) | intergenic (+50/‑357) | phoR/brnQ | sensory histidine kinase in two‑component regulatory system with PhoB/branched‑chain amino acid transport system 2 carrier protein; LIV‑II transport system for Ile, Leu, and Val | |||||
| * | ? | NC_000913 | 4623916 = | 80 (1.220) | 3 (0.050) | 3/586 | 9.8 | 3.6% | coding (202/1017 nt) | lplA | lipoate‑protein ligase A |
| ? | NC_000913 | 4623943 = | 83 (1.300) | coding (175/1017 nt) | lplA | lipoate‑protein ligase A | |||||
| * | ? | NC_000913 | = 2520544 | 68 (1.040) | 3 (0.050) | 3/590 | 9.8 | 4.6% | coding (129/1416 nt) | gltX | glutamyl‑tRNA synthetase |
| ? | NC_000913 | = 2928587 | 57 (0.880) | coding (359/1290 nt) | sdaC | putative serine transporter | |||||
| * | ? | NC_000913 | 2357011 = | 64 (0.980) | 3 (0.050) | 3/592 | 9.8 | 4.9% | coding (108/900 nt) | yfaD | transposase_31 family protein |
| ? | NC_000913 | 2357042 = | 54 (0.830) | coding (139/900 nt) | yfaD | transposase_31 family protein | |||||