New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1570598 =66 (1.080)3 (0.050)
+CCGTTACCGTTAAAC
3/542 8.0 5.1% intergenic (‑109/+47) gadC/gadB glutamate:gamma‑aminobutyric acid antiporter/glutamate decarboxylase B, PLP‑dependent
?NC_000913 3666176 = 53 (0.870)intergenic (‑366/+4) gadX/gadA acid resistance regulon transcriptional activator; autoactivator/glutamate decarboxylase A, PLP‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

CCGCAGCACAAAGTCCCACGGGAATAAACCATAAAATCCCGCCTAATAGCAGGAAGAAGACTAATGAAAAGCCCGATGTTGCGAAGGTAGGGTATTCATAAACAGCCATTACCATCGATGCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCATTTCGAAGCCGCGACGACACATAATGCGCATCACCACGATGTCGGTGGCTTCACCGCCGAGAGTGAAGGCCGGAACCTGCCAGCCGCGCAGACGCAGACGTTCAGAGAGGTCATACAGGGTGTATCCCGGATC  >  NC_000913/1570303‑1570887
                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                                 
cccaagcaAAAAGTCCCACAGGAAAAAACCATAAAATCCCGCCCAAAAGCAGGAAGAAGACTAAGGAAAAGCCCGATGTTGCGAAGGTAGGGTATTCATAAACAGCCATTACCATCGATGCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTccc                                                                                                                                                                                                                                                                                              <  2:49914/297‑1 (MQ=255)
               ccACGGGAATAAACCATAAAATCCCGCCTAATAGCAGGAAGAAGACTAATGAAAAGCCCGATGTTGCGAAGGTAGGGTATTCATAAACAGCCATTACCATCGATGCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAGGCGTATTCATAACAATATTTTCCGTTTGTAATGCCAGTGCAAAGACTTTGGAAATTGTCCCGAAACGGGTTCGttt                                                                                                                                                                                                                                                                               >  2:18931/1‑301 (MQ=255)
                cACGGGAATAAACCATAAAATCCCGCCTAATAGCAGGAAGAAGACTAATGAAAAGCCCGATGTTGCGAAGGTAGGGTATTCATAAACAGCCATTACCATCGATGCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCATGGAACAGACTTGGGAAATTGTCTGGAAACGGGTTGGtttt                                                                                                                                                                                                                                                                              >  2:278465/1‑300 (MQ=255)
                cACGGGAATAAACCATAAAATCCCGCCTAATAGCAGGAAGAAGACTAATGAAAAGCCCGATGTTGCGAAGGTAGGGTATTCATAAACAGCCATTACCATCGATGCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTTAACAGATTTTGGAATTTGTCCCGAAACGGGTTGGtttt                                                                                                                                                                                                                                                                              >  2:358362/1‑300 (MQ=255)
                 ccGGAAATAAACGAAAAAATCCCGCCAAAGAGCAGGAAGAAAACTAATGAAAAGCCCGTTGTTGCGAAGTGAGGGAATTCATAAACAGCCATTACCATCGATGCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCg                                                                                                                                                                                                                                                                             <  2:270745/300‑1 (MQ=255)
                   gggAATAAACCATAAAATACCGCCTAATAGCAGGAAGAAGACTAAGGAAAAGCCCGATGTTTGGAAGGTAGAGTATTCATAAACAGCCATTACCATCGATGCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGAACCCGTTTCggg                                                                                                                                                                                                                                                                           <  2:68860/301‑1 (MQ=255)
                     aaagaaaCCAAAAAATCCAGCTTAAAAACAGAAAACAGCCGAAGAAAAAGCCCGGTGGTGCGAAGGTAGGGTATTCATAAACAGCCATTACCATCGATGCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGac                                                                                                                                                                                                                                                                         <  1:4692/297‑1 (MQ=255)
                     aaaTAAACCAGAAAATCACGCCTAATAGCAGAGAGAAGACTAATGCAAAGCCCGATTTTGCGAAGGTAGGGTATTCATAAACCGCCATTACCATCAAAGCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGAAGTAGCCATATTATCCCCCTAAATCGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGac                                                                                                                                                                                                                                                                         <  2:369764/300‑1 (MQ=255)
                                              tAGCAGGAAGAAGACTAATGAAAAGCCCGATGTTGCGAAGGTAGGGTATTCATAAACAGCCATTACCATCGATGCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCTAAACGGGTTCGTTTGGGGCCACCGTTACCGTTAAACTTTATCAgg                                                                                                                                                                                                                                                >  1:439804/1‑301 (MQ=255)
                                                 cAGGAAGAAGACTAATGAAAAGCCCGATGTTGCGAAGGTAGGGTATTCATAAACAGCCATTACCATCGATGCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGt                                                                                                                                                                                                                                                                                                 <  1:44637/249‑1 (MQ=255)
                                                 cAGGAAGAAGACTAATGAAAAGCCCGATGTTGCGAAGGTAGGGTATTCATAAACAGCCATTACCATCGATGCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCCGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGGGAACAGACTTTGGAAATTGt                                                                                                                                                                                                                                                                                                 >  2:44632/1‑249 (MQ=255)
                                                  aagaagaaGACTAATGAAAAGCACGATGTTGCGAAGGTATGGTATTCATAAACAGCCATTACCATCGATGCCTTTATGGCAAAGAATCCAAGTAATGTGCGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATg                                                                                                                                                                                                                                            <  1:446902/299‑1 (MQ=255)
                                                  aGGAAGAAGACTAATGAAAAGCCCGATGTTGCGAAGGTAGGGTATTCATAAACAGCCATTACCATCGATGCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTTTCAgtgatg                                                                                                                                                                                                                                            >  1:559001/1‑296 (MQ=255)
                                                     aagaagACTAATGAAAACCCCGATGTTGCGAAGGTAGGGTATTCATAAAAAGCCATTACCATCGATGCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTATTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGttt                                                                                                                                                                                                                                         <  1:349932/301‑1 (MQ=255)
                                                          aaCTAAGTAAAAGGCCGATTTTGCGAAGGTAAGGTATTCAATAACCACCATTACCCTAGACTCCGTTATGGCAAAGCATCCAAGGAATGTTGTCTGCTTAGCTTTACCTGTCTGTACTGATGGAGCCATATTATCCCCCTAAAACGGTATTCCCGTCGGAACCGATCCTGTTTTGTTCTGAAGCGGATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAAcatacctgataacgtttaacgg                                                                                                                                                                                                                                    <  2:557844/300‑22 (MQ=255)
                                                            cTAATGAAAAGCCCGATGTTGCGAAGGTAGGGTATTCATAAACAGCCATTACCATCGATGCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTCATGCCACTCAACAGCCTTTGGAAATTCTCCCCAACCGGGTTCGTTTCGGGACACCTTTCCCCTCACACGTTATCAGGTATGCTTAACGccc                                                                                                                                                                                                                                  >  1:218480/1‑299 (MQ=255)
                                                                 gAAAAGCCCGATGTTGCGAAGGTATGGTATTCATAAACAGCCATTACCATCGATGCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGctgttct                                                                                                                                                                                                                              <  1:18933/300‑1 (MQ=255)
                                                                       cccGATGTTTCGAAGGTAGTGTATTACTAACCAGGCCTTACCATCGATGCCGTTAAGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTTTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGc                                                                                                                                                                                                                       <  2:558869/301‑1 (MQ=255)
                                                                              ttGCGAAGGTAGGGTATTCATAAACAGCCATTACCATCGATGCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAAAGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCATTAccc                                                                                                                                                                                                                >  1:281457/1‑301 (MQ=255)
                                                                                gCGAAGGTAGGGTATTCATAAACAGCCATTACCATCGATGCCGTTATGGCAAAGAATCAAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTTCCCCCTAAAACGGTATTCCTGTCGTAACCGCATCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTACTTCCAATGAACCGACTTTGGAAATTGTCCCGAAACGGGTTCTGTTCGTGAACACGTTACAGTTAAACGTTATCGGCCATGTTTAACGCTGTTCTGTTGTCCAATCCTCTg                                                                                                                                                                                                              >  1:313332/1‑300 (MQ=255)
                                                                                  gAAGGTAGGGTATTCATAAACAGCCATTACAATCGATGCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAACCGTATTCAGAACAATATTTTCCGTTGCTCATGCCAGTGAAAAGACTTTGGAAATTGTCCCACAACGGGTTTGTTTCGGTACCCCGTTTACGTTAAACTTCATCAGGCATGTTTAAAACTGTTCTGTTGGGCACTACCCTgtc                                                                                                                                                                                                            >  2:93356/1‑299 (MQ=255)
                                                                                        aGGGTATTTATAAACAGCCATTACCCTCGATGCCGGTATGGCCAAGAAGCCCAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCg                                                                                                                                                                                                      <  2:439696/301‑1 (MQ=255)
                                                                                            tATTCATAAACAGCCATTACCATCGATGCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATGCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGt                                                                                                                                                                                                   <  1:471116/300‑1 (MQ=255)
                                                                                                             tACCATCAATGCCTTTATGGCAAAAGATCCAAGTACTGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTc                                                                                                                                                                                  <  1:278545/300‑1 (MQ=255)
                                                                                                                       gCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTTATTGCTGAGTTATTTCAGGGAGGCttt                                                                                                                                                                       >  1:401633/1‑301 (MQ=255)
                                                                                                                           ttATGGCAAAGAATCCTAGTAAAGTTGGCTGCTGAGCTTTAACTGTCTGTACTGATGTAGCCATATGATCCCCCTAAAACGGTATTCCTGGCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGACCAATATGTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGt                                                                                                                                                                     <  2:248216/299‑1 (MQ=255)
                                                                                                                                 aaaaaaaTCCAATTAATTTGAGCTGCTTACCTTTCCCTGTCTGTACTCTAGTCGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGTACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTcc                                                                                                                                                             <  2:281377/300‑1 (MQ=255)
                                                                                                                                  aaaGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCGTTTTGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTGTGTAGTCTTccc                                                                                                                                                            >  2:408974/1‑300 (MQ=255)
                                                                                                                                     gAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTTTTTCAGc                                                                                                                                                          >  1:270710/1‑300 (MQ=255)
                                                                                                                                                    gcgctgcaTAGCGTTACCTGTCGGTTTTGTGGAAGTCGTATGATCCCCCGAAGACGGAAGTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTGTTCATAACAATATTGTCCGTTTGTAATGCCCGGGAACAGACCTGGGAAATTGTTCCGAAACGTGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAg                                                                                                                                           <  1:429222/298‑1 (MQ=21)
                                                                                                                                                                       ttctgtTCTCATGTAGCCTTTATACCCCCCTAAACTGTTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCTTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCATTTCGAAGCCGcgac                                                                                                                        <  2:401540/299‑1 (MQ=37)
                                                                                                                                                                       tgttcacatGATGTAGCTATATAACCCCCCTAGCACGGTATTCCTGACGGAACAGACGCTGTTATTATTTACGACGTATTCAAAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAACTTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCATTTCGAAGCCGcgac                                                                                                                        <  2:386676/292‑1 (MQ=21)
                                                                                                                                                                         ctgtACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCggg                                                                                                                                                                                                                                                                           <  2:281939/151‑1 (MQ=255)
                                                                                                                                                                         ctgtACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATATCAGGGAGGCTTTGTAGTCTTCCAGCACCAGTTCATCAACGTCCAtttttcttcgtcgactcc                                                                                                                     >  1:101521/1‑286 (MQ=255)
                                                                                                                                                                         ctgtACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGGTCGTTTCggg                                                                                                                                                                                                                                                                           >  1:282019/1‑151 (MQ=255)
                                                                                                                                                                          tcatctttagttgCCATATTCGCCCCCTAAAACGGTATTCCTGTCGGAACCGCATCTGTTTTGTTCTGAAGCGTATTCAGAAAAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCATTTCGAAGCCGCgacgac                                                                                                                     <  2:270636/288‑1 (MQ=255)
                                                                                                                                                                                      gCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTGCAGCAAAGTCCATTTCGAAGCCGCCACTCCACCTAAttgctat                                                                                                        >  2:399603/1‑295 (MQ=255)
                                                                                                                                                                                              atCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAATCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCATTTCGAAGCCGCGACGACACATAATGCGCATCACCACGa                                                                                                <  1:358451/301‑1 (MQ=255)
                                                                                                                                                                                                  cccTAAGACGGTATTCCTGCCTGAACCGCACCTGTTTTGTTCTGAGGCGTATTCAGAACAATATTTTCCTTAGCTAAAGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACAGGTTCGTTTCGTGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCa                                                                                                                                                                                                                      <  2:438635/179‑1 (MQ=255)
                                                                                                                                                                                                  cccTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCTCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCa                                                                                                                                                                                                                      >  1:438743/1‑179 (MQ=255)
                                                                                                                                                                                                  cccTAAAACGCTATCCCTGGCGGACCCGCCCCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCATTTCGAAGCCGCGACGACACATAATGCGCATCACCACGATGTc                                                                                            <  1:93375/301‑1 (MQ=255)
                                                                                                                                                                                                   ccTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTCTCAGGTATGTTTAAAGCTGTTCTGTTGGGAAATACCCTGCAGTTTCGGTGGATCGCTGGGATATTTCAGGGAGGCTGTGTAGTCAGCCTGCACAAGTTCAGCAAGGTCCATTTCGCCGCCGCGACGTCCAATAAGGCGCATCACCATGATGt                                                                                             >  2:316962/1‑299 (MQ=255)
                                                                                                                                                                                                        aacaaatatacgtgcgcatacgcacgcggtttGTTCTGAAGAGTATGACGAAAAATATGTTCAGTTGAGACTGCCAGTGAAGAGACTTTGGAAATTGTCCCGAAACGTGTGCGTTTCGAGACACCGGTACCGTTAAACGTGAGCAGGTATGTTTAAAGCTGATCTGTTGGGCAATACAATGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTACACTTCGAAGCAGGGACGAAACATAAAGCGCATCACCACGAGGTCGGTGGc                                                                                      <  2:101502/272‑1 (MQ=17)
                                                                                                                                                                                                                 ccTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCTTGCAGTTTCGGGTGATCGCTGATATATTTCAGGGAGGATTTGTAGTCTTCCCTCAACAGTTAAGCAAAGTACATTTCGCATCGCCGGCGTCACATAATACGCATCACCACGCGGTACGTGGCTTCCccacc                                                                             >  2:211634/1‑301 (MQ=255)
                                                                                                                                                                                                                       ggAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGAAAAGTCGATTTc                                                                                                                                   >  1:240589/1‑241 (MQ=255)
                                                                                                                                                                                                                           ccGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTACGTTTCGGGACACCGTTACCGTTAAACGTTATTAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACTCTACATCTACGGGTGTTCGCTGAGATATTTCAGGGAGGCTTTGTAGTTTTCCAGCAACAGCACAGCAAAGTCCATTTCGATGTCGAGACGAACCATCATTAGCCTAACCACGATGTCGGTGGCTTGAGCGCCGGGAGTGa                                                                     >  1:364183/1‑299 (MQ=25)
                                                                                                                                                                                                                                   atattgttctgaatacgcttCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCATTTCGAAGACGCGACGACCCATAATTCGCCTCCACTCGATGTAGGAGGCTTCCCCCGCGGACGTGAAGGCCGAAAc                                                           >  2:344858/19‑301 (MQ=21)
                                                                                                                                                                                                                                    tattgttctgaatacgcttCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCATTTCGAAGCCGCGACGACACATATGGCGCAACACCACGATGTCGGTGGCTTAACCGCCGAGAGTGAAGGCCGGAAcc                                                          >  1:287163/18‑301 (MQ=255)
                                                                                                                                                                                                                                          tCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCATTTCGAAGCCGCGACGACACATAATGCGCATCACCACGATGTc                                                                                            >  1:426063/1‑261 (MQ=255)
                                                                                                                                                                                                                                             gaatacgcttCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCATTTCGAAGCCGCGACGACACATAATGCGCATCACCACGATGTCGGTGGCTTCACCGCCGAGAGTGAAGGCCGGAACCTGCCAGccc                                                 >  1:244600/9‑300 (MQ=255)
                                                                                                                                                                                                                                             gAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTGTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCATTTCGAAGCCGCGACGACACATAAAGCGCAACACCACGATGTCGGTGGCTGTACCGCCGAGGGGGGAGGCCGGacacggcacgacg                                                 >  2:104522/1‑289 (MQ=21)
                                                                                                                                                                                                                                                gCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCATTTCg                                                                                                                                  <  1:28294/217‑1 (MQ=255)
                                                                                                                                                                                                                                                gCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCAGAACCGGGTTCGTTTCGGGACACCGTTACCGTTAATCGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGAGCGCTGAGATATTTCAGGGAGGCTTTGTATTCTTCCATCAACAGTTCAGCAAAGTCCATTTCg                                                                                                                                  >  2:28292/1‑217 (MQ=255)
                                                                                                                                                                                                                                                  gaattacgAAAAATTTTTGCCGTTGTTAATGCCAGGGAACTGACTGTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCATTTCGAAGCCGCGACGACACATAATGCGCATCACCACGATGTCGGTGGCTTCACCGCCGAGAGTGAAGGCCGGAACCTGCCAGCCGcgcag                                            <  1:104541/294‑1 (MQ=255)
                                                                                                                                                                                                                                                           aCAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCAATTTCGAAGGCGCGACGACACATAATGCGCATCACCACGATGTAGAGGGCTGCACCGCCGGAAGTGAAGGCCgagaccgcgcagcggcgcgaccgcagca                                    >  2:144842/1‑273 (MQ=18)
                                                                                                                                                                                                                                                               gttggtaagattttAATGCGAGTAAACAGACTTTTGATATGGTCCCGAAACTGGTTATTTTCGGTACACAGTTACCGTTAAACGTTTACATGTATGTTTAAAGCGTTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGACTTCCAGCAACAGTTCAGCAAAGTCCATTTCGAAGCCGCGACGACACATAATGCGGATCACCACGATGTCGGTGGCTTCACCGCCGAGAGTGAAGGCCGGAACCTGCCAGCCGCGCAGACGCAGACGTTc                                <  1:467046/287‑1 (MQ=14)
                                                                                                                                                                                                                                                                         tGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCATTTCGAAGCCGCGACGACACATAATGCGCATCACCACGATGTCGGTGGCTTCACCGCCGAGAGTGAAGGCCGGAACCTGCCAGCCGCGCAGACGCAGACGTTCAGAGAGGTCAt                     >  1:382995/1‑301 (MQ=255)
                                                                                                                                                                                                                                                                            tAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGACCATTTCGACGTCGCGACGACACATAATGCGCATACCCACGATGTCGGTGGCTTCACAGCCGAGAGTGAAGGCCGGAACCGTCCAGCCGcgcagacgcaggtgtcaaggtgggacgagtg                  >  2:466932/1‑281 (MQ=18)
                                                                                                                                                                                                                                                                            tAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTAGGGTGATCGCTTAGATATTTCAGGGAGGCTTTGTCGTCTTCCTGCCACAGTTCAGCAAAATCCATCTCGAAGCCGCTACGACACATCATGCGCATCCCCAACCAGTCGGTGGCATACTCGGCGAACGGTAAGGCCTGAACCAGCCAGCCGGGGAGACGCACACGttacgtagggtcaaac                   >  2:60749/1‑286 (MQ=255)
                                                                                                                                                                                                                                                                                gCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCATTTCGAAGCCGCGACGACACATAATGCGCATCACCACGATGTCGGTGGCTTCACCGCCGAGAGTGAAGGCCGGAACCTGCCAGCCGCGCAGACGCAGACGTTCAGAGAGGTCATACAggg               <  1:344945/300‑1 (MQ=255)
                                                                                                                                                                                                                                                                                 ccAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAACACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCa                                                                                                                                                         <  2:125836/161‑1 (MQ=255)
                                                                                                                                                                                                                                                                                 ccAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAACACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCa                                                                                                                                                         >  1:125866/1‑161 (MQ=255)
                                                                                                                                                                                                                                                                                         cAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACATCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATATCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCTTTTCGAAGCCGCGACGACTCATAATGCGCATCCCCACGATGTCGGTGGCTTCACCGCCGAGAGGGAAGGCGGGACCTTCACAGCCGCGCAGACGCAGAAGTTTAGAGAGGGCATACACGGTGTAATCCgg     >  2:41358/1‑301 (MQ=17)
                                                                                                                                                                                                                                                                                           gACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCAttt                                                                                                                                    >  2:201184/1‑172 (MQ=255)
                                                                                                                                                                                                                                                                                           gACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCAttt                                                                                                                                    <  1:201241/172‑1 (MQ=255)
                                                                                                                                                                                                                                                                                            actgttgAAATTGTCCCGAAAGGAGTTCGTTTCGGGACACCGTTACCGGTAAACGTTATCAGGTATGTTTAAAGGTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCATCAACAGTTCAGCAAAGTCCATTTCGAAGCCGCGACGACACATAATGCGCATCACCACGATGTCGGTGGCTTCACCGCCGGGAGTGAAGGCCGGAACCTGCCAGCCGCGCAGACGCAGACGTTCAGAGAGGTCATACAGGGTGTATCCCGGATc  <  1:405344/295‑1 (MQ=255)
                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                                 
CCGCAGCACAAAGTCCCACGGGAATAAACCATAAAATCCCGCCTAATAGCAGGAAGAAGACTAATGAAAAGCCCGATGTTGCGAAGGTAGGGTATTCATAAACAGCCATTACCATCGATGCCGTTATGGCAAAGAATCCAAGTAATGTGAGCTGCTTAGCTTTACCTGTCTGTACTGATGTAGCCATATTATCCCCCTAAAACGGTATTCCTGTCGGAACCGCACCTGTTTTGTTCTGAAGCGTATTCAGAACAATATTTTCCGTTGCTAATGCCAGTGAACAGACTTTGGAAATTGTCCCGAAACGGGTTCGTTTCGGGACACCGTTACCGTTAAACGTTATCAGGTATGTTTAAAGCTGTTCTGTTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAGTCTTCCAGCAACAGTTCAGCAAAGTCCATTTCGAAGCCGCGACGACACATAATGCGCATCACCACGATGTCGGTGGCTTCACCGCCGAGAGTGAAGGCCGGAACCTGCCAGCCGCGCAGACGCAGACGTTCAGAGAGGTCATACAGGGTGTATCCCGGATC  >  NC_000913/1570303‑1570887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.