New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	55 (0.930)	51/556	0.1	99.1%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	1 (0.020)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

GTGTTGAGGCCAACGCCCATAATGCGGGCTGTTGCCCGGCATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAG‑GCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAA  >  NC_000913/1978980‑1979570                                                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                                     cacccagaataaccaactttatttttatgcggtttcaccgcaccccgtgatgtcgccgggaagccccggtaaaaaataattagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcttcactacacgcacatacaacggagtggggctgcgattttcaataatgcgtgatgcagatcaccaaaaacactcaattacttaacataaatgtt                                                                                                                                                                                                                                                                                                     >  1:236036‑M2/300‑300 (MQ=255)                       ttttatgcggtttcaccgcaccccgtgatgtcgccgggaagccccggtaaaaaataattagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                                                                                                                                                                                <  1:431066‑M2/23‑1 (MQ=255)                        ggggtgcggtgaaaccgcaccccgtgatgtcgccgggaagccccggtaaaaaataattagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacccgcacctacaacggagtggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattcattaacctaactgTATAAGTCatacttttgttttttgt                                                                                                                                                                                                                                                                              >  1:103279‑M2/277‑297 (MQ=255)                                          accccgtgatgttgccgggaagccccggtaaaaaataattagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataattcgtgattcagatcacacaaaacaatcaattacttaacataaattTATAAGTAATAATTTTGTTTTGGGTGTATTTCAATCTGTTaa                                                                                                                                                                                                                                                             >  1:195106‑M2/259‑300 (MQ=255)                                                      cgccgggaagccccggtaaaaaataattagcattagaatagttgcgataagctgcaataagaagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacatttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacgggggggggctgcgctttacaatactgcgtgatcaaggtcaaccaaaacactaaattactttacatcaatgTATAATTCCAACTTTGTGTATGGGAATATTTCATGCTGCTTAcaagtgtttaact                                                                                                                                                                                                                                                >  1:148775‑M2/247‑297 (MQ=255)                                                                ccccggtaaaaaataattagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAATTTTGTTTTGGGTGTATTTCAATCTGTTAAAATGTTTTTAGCTATGCTagca                                                                                                                                                                                                                                       >  1:183804‑M2/237‑300 (MQ=255)                                                                ccccggtaaaaaataattagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttaaacaatgcgtgatgcagatcacacaaaacactaaatcacgtaacataaatgTATAAGTCATACTTGTGTTTAGGGTGTATTTCAATCGGTTCACAATATTTTGACTACTCTcgca                                                                                                                                                                                                                                       >  1:434299‑M2/237‑300 (MQ=255)                                                                  cctgtaaaaaataattagtattataatagtttcgataagatgcaataagcataaccaccttttttgtttaatatgtccttacaaatcgaaatgggtctttacccttatctaagatttttcctaactcgacgcaactgtactcggcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaagc                                                                                                                                                                                                                                    <  2:419492‑M2/67‑1 (MQ=255)                                                                      aaaaaaataattagcattagaatagttgcgataagctgcaataagcagaatcaccttttttgtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaa                                                                                                                                                                                                                                <  1:559159‑M2/71‑1 (MQ=255)                                                                       aaaaaataattagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGGTTTGGGTGTATTTCAATCTTTTAAAAATTTTTTCGCTAAGCTAGCAAGAaaaa                                                                                                                                                                                                                                >  1:284564‑M2/230‑300 (MQ=255)                                                                          aaataattagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaccactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGTTGTATTTAATTCTGTTAAAATGTTTTTTGCTTCGCTAGCAAGCAAAACTg                                                                                                                                                                                                                             >  1:373992‑M2/227‑300 (MQ=255)                                                                               attagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcattacacgcacatacaacggaggggggctgcgattttccataatgcgtgatgcagatcacacaaaacacccaattacttaacataaatgTATAAGTCAAACTTTTGTTTTGGGTGTATTGCAATCTATTACAAAGTTTTTTGCAACGCTAGCAAGCAAAAAtgaaaaa                                                                                                                                                                                                                        >  1:95776‑M2/222‑298 (MQ=255)                                                                                    cattagaaaaggtgcgataagctgcaaaaagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtacgcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaata                                                                                                                                                                                                                  <  2:183752‑M2/85‑1 (MQ=255)                                                                                                        gctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctacgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaaaataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTAAATCTGTTAAAAAGTTTTTCGTTACGCTAGCAAGCAAAAATGAAAAAGGAATAATCGAAATGGGATTTTgcgc                                                                                                                                                                                              >  1:102552‑M2/197‑301 (MQ=255)                                                                                                          tgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAATTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAATTTTTTCGCTACGCTAGCAATCAAAAAGGAAAAAGGAATAATGAaaatgggatttatcaaa                                                                                                                                                                                             >  2:548416‑M2/195‑292 (MQ=255)                                                                                                           gcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCACGCAAAAATAAAACAGGAATAATCTAAATGGGATGTTGCGcac                                                                                                                                                                                            >  1:353114‑M2/194‑300 (MQ=255)                                                                                                                     gaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGt                                                                                                                                                                                         >  1:238677‑M2/184‑293 (MQ=255)                                                                                                                     gaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATa                                                                                                                                                                                  >  2:519372‑M2/184‑300 (MQ=255)                                                                                                                     gaaccacccttttggtttaatatgtccttacaaatagaaatgggtctttacacgtatctaagatttttcctaaatcgacgcaactgtaatcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGt                                                                                                                                                                                         <  2:238613‑M2/110‑1 (MQ=255)                                                                                                                                   gtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggagggtggctgcgatgttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacatatatgTATAAGTCATACTATTGTATTGGTTGTATTTCAATCTGTTAAAAAGTTTTTCGATCAGCTATCAAGCCAAAATGAAACAGGACTCATCGAAATGGGCTGTTGAGTACTATCAAAATAACTCAACATAaata                                                                                                                                                                    >  2:263891‑M2/170‑300 (MQ=255)                                                                                                                                          atgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAatgggatgttgcgcacagtcaaaaaaataggaagagcgtgcagtaggg                                                                                                                                                            >  2:529857‑M2/163‑280 (MQ=255)                                                                                                                                          atgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaaa                                                                                                                                                                                    <  1:529983‑M2/115‑1 (MQ=255)                                                                                                                                           aatccctaaaaatagaaaatggttcttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGc                                                                                                                                                           <  2:284484‑M2/140‑1 (MQ=255)                                                                                                                                            gtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAATAGGAATAATCGAAATTGGATGTTGCGCAAAGTCAAAAAAACTCACCGTAACAAATCATATgcc                                                                                                                                                          >  2:12315‑M2/161‑300 (MQ=255)                                                                                                                                                      atagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTAACCGAAAAAAatca                                                                                                                                                                >  1:251202‑M2/151‑285 (MQ=255)                                                                                                                                                      atagaaatgagtcttttcaattatccaaaagttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacgggggggggctgcgattttcaataatgcgtgatgcgaatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatca                                                                                                                                                                <  2:251132‑M2/135‑1 (MQ=255)                                                                                                                                                                       cacttatctaagatatttcctaaatcgacgcaactgtactcatcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcactcaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCa                                                                                                                               <  1:12315‑M2/168‑1 (MQ=255)                                                                                                                                                                           tatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATAAAAATGGGATGTTGCGCACAGTCAAAATAATTAACCGTAAATAATAATATGCTATAAACAAAACCTTTCATGCAATaacaaaa                                                                                                                            >  2:331726‑M2/130‑297 (MQ=255)                                                                                                                                                                             agaaaagtttgtccaaaatagacgtaactgtaatcgtcacgacaagcacatacaagggaggggtgctactatgttctataaagcgttatgcatatcacacaaaacaataaattacttaacataaattTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGATAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAg                                                                                                                         <  1:316959‑M2/174‑1 (MQ=255)                                                                                                                                                                                         cctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGc                                                                                                                        >  1:237516‑M2/116‑290 (MQ=255)                                                                                                                                                                                         cctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggagctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGc                                                                                                                        <  2:237452‑M2/175‑1 (MQ=255)                                                                                                                                                                                          ctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGAAAAGCTATTTTTAAAc                                                                                                             >  1:427005‑M2/115‑300 (MQ=255)                                                                                                                                                                                                cgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGacac                                                                                                       <  1:68833‑M2/192‑1 (MQ=255)                                                                                                                                                                                                 gacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTTCGCACAGACAAAATAACTAACCGTAAATAATAATCTGCTTTAACAAATCAATTTcatgcaatacaaaataagagaacgaaaaacgatag                                                                                                        >  2:25783‑M2/108‑281 (MQ=255)                                                                                                                                                                                                 gacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAg                                                                                                                         <  1:25785‑M2/174‑1 (MQ=255)                                                                                                                                                                                                             catgacccgacacgcaaataccagggagggggaatgagattttcaattatgggtgatgcagataacacaaatacctcaattacttaacataaatgTATGAGTCATACTTTTGTGTTGGGTGTATATCAAGCTGTTAAACAGTTTTTCGCGACTCTAGCAAGCAAAAATGAAACAGGAATAAGCGAAATGTGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGAGAAGCTATTTTTAAACAGACACTTACCGCAcaacaa                                                                                         <  2:95757‑M2/206‑1 (MQ=255)                                                                                                                                                                                                                       cacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGAAACTTACCGCACAAACAAATAATaaa                                                                                >  1:12631‑M2/86‑300 (MQ=255)                                                                                                                                                                                                                         cgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCAATTTAATGCAATACCAGATAAGCTATTTTTAAACAGACAATTACCGAACACAAAACTAATAAAAt                                                                              >  2:279691‑M2/84‑300 (MQ=255)                                                                                                                                                                                                                         cccacacacaaacagagggagcttggattttcaataacacgttatgcagatcacacaaaaccctcaatttcttaacataaatgCATAAGTCATACTCTTGTTTTAGGTTGTTTTCAATCTGTTAAAAAGTTTTTCGCTACGCTACCAAGCAAAAATGGAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATATCTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATa                                                                             <  1:263965‑M2/218‑1 (MQ=255)                                                                                                                                                                                                                          ggaaatacaacggaggggggctgcgattttcaataattcgtgatgcagatcacaaaaaacactcaattacttaacataaatgTATAAGTTATACTATTGTTTTTGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATAc                                                                            <  2:195052‑M2/219‑1 (MQ=255)                                                                                                                                                                                                                           cacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACAAGATAAGATATTTTTAAACAGAAACTTACAGCACAACAAACTAATTAAAtaa                                                                            >  2:459515‑M2/82‑299 (MQ=255)                                                                                                                                                                                                                           aacataaaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACa                                                                           <  1:331812‑M2/220‑1 (MQ=255)                                                                                                                                                                                                                                  aacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTATTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAGTAATCGAAATGGGATGTTGCGCACATGCAAAATAACTCACGGTAAATAATCATCTGCTATAAATAATCACTTACATGAAATACAAGATAAGCTATATTTAAACAGACACTGACCACACAACAAACTAATTAaaaaaaaaaaaa                                                                     >  1:231742‑M2/75‑300 (MQ=255)                                                                                                                                                                                                                                       aggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATAACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAATTACAAAAAAAG‑Gcaa                                                               >  1:206746‑M2/70‑300 (MQ=255)                                                                                                                                                                                                                                         gggggcttcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaatatacatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCGCTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAG‑Gcaacaa                                                            <  2:426905‑M2/234‑1 (MQ=255)                                                                                                                                                                                                                                              ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAAAAAACTAATTAAATACAAAGAAAG‑GAAACAATCaa                                                        >  1:413599‑M2/63‑300 (MQ=255)                                                                                                                                                                                                                                               tgcgattttcaataatgcgtgatgcaaatcacaaaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAG‑GCAACAATCAAc                                                       <  1:459627‑M2/239‑1 (MQ=255)                                                                                                                                                                                                                                                      ttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCCAAACAAACTAATTAAATACAAAGAAAA‑GAAACAATCAATttaatgtt                                               >  1:232333‑M2/55‑301 (MQ=255)                                                                                                                                                                                                                                                        cagacgctcttccgatctaacacacaaaacactcaattacataacataaatgTATAAGTTATACTTTTTTTTTGGGTGTATTTCAATCTGTTAAAAAGTGTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAG‑GCAACAATCAACttaatgttaa                                             <  2:317027‑M2/249‑1 (MQ=255)                                                                                                                                                                                                                                                               gcgtgatgcaaataacaaaaaacactaaattacttaaaataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAG‑GCAACAATCAACTTAATGTTAATGAAATg                                      <  1:279771‑M2/256‑1 (MQ=255)                                                                                                                                                                                                                                                                    atgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAGATAATCACTTTCATGAAATACCAGATAAGCTATTTTTAAACACACACTTACCGCACAAAAAACGACTTAACAACAAAAAAAGCACAAGAA‑CAAGTTAATGTAAATTAAATattta                                  >  1:287415‑M2/41‑299 (MQ=255)                                                                                                                                                                                                                                                                    atgcagaacacacaaaacactcaatgacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAG‑GCAACAATCAACTTAATGTTAATGAAATGTTTTa                                 <  1:519496‑M2/261‑1 (MQ=255)                                                                                                                                                                                                                                                                          atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAG‑ACAACAATCAActtaatgttaaagaacgtaagataacac                            >  1:317112‑M2/35‑287 (MQ=255)                                                                                                                                                                                                                                                                                           attacttgacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAG‑GCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAAt          <  2:413502‑M2/284‑1 (MQ=255)                                                                                                                                                                                                                                                                                                 taacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAG‑GCAACAATCAACTTAATGTTAATGAAATGATTTACATATATTAACCAATTGtttaattctga     >  1:173985‑M2/12‑295 (MQ=255)                                                                                                                                                                                                                                                                                                  accATATATGAATAAGTCATACTTTTGTTTTGGGTGTAAATCAATCTGTTAAAAAGTTTTTCGCTACTCTAGCAAACAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAG‑GCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGgaga   <  2:287335/300‑1 (MQ=255)                                                                                                                                                                                                                                                                                                    cataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAG‑GCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTgtttaatgatgggaa  >  1:238741‑M2/9‑293 (MQ=255)                                                                                                                                                                                                                                                                                                        aatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGc                                                                                                                                      >  1:59612‑M2/5‑165 (MQ=255)                                                                                                                                                                                                                                                                                                        aatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGc                                                                                                                                      <  2:59604‑M2/161‑1 (MQ=255)                                                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                                     GTGTTGAGGCCAACGCCCATAATGCGGGCTGTTGCCCGGCATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAG‑GCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAA  >  NC_000913/1978980‑1979570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.