Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,815,859	Δ82 bp		[rph]–[rph]	[rph], [rph]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3815859	3815940	82	63 [0]	[0] 62	[rph]–[rph]	[rph], [rph]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3815858	0 (0.000)	60 (1.020)	53/552	0.1	100%	pseudogene (24/48 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
	?	NC_000913	3815941 =	0 (0.000)					pseudogene (609/669 nt)	rph	ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

AACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGACGCGGTACGCGTGCCACCATCAGCCTGAAGCACGTCGCAGTCCAGCGTAATGGTGAACTCACCCAGCGCTTTCA  >  NC_000913/3815650‑3816239                                                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                                           caaaagatcgacctcaaagccggaatccaccaacgattcagcggaaaaacggcctaacagggccagatcgcgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGc                                                                                                                                                                                                                                                                                                   <  2:244273‑M2/10‑1 (MQ=255)    cagatcgaactcaataccggaatccaccaacgtttccgcgtaaaaacggcctaacagtgccagatcgcgccctgtattaaacagcccggcgttgaagaaatagtggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACt                                                                                                                                                                                                                                                                                                <  2:83049‑M2/13‑1 (MQ=255)     agatcgaactcaatgccggaatccaccaacgcttcagcgtaaaaacggcctaacagtgccagatcgcgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatctggtttcatgccttcgctactgatattaattttctccaaactaaaaaaaggctactcaccagttgccttaaaaatcaagttgcccacaccgccttctccCtttcccttcccgt                                                                                                                                                                                                                                                                                               >  2:195937‑M2/288‑295 (MQ=255)             ctcaatgccggaatccaccaacgcttcagcgtaaaaacggcctaacagtgccagatcgcgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacacaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCaatgatc                                                                                                                                                                                                                                                                                       >  1:102904‑M2/280‑300 (MQ=255)               caatgccgcaatccaccaacccttcatcgtaaaaacggcctaacagtgccagatcgcgcccggtattaaacagcccgtcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaactcctgcttgctaagggcaagttcaatatactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgc                                                                                                                                                                                                                                                                                      <  1:565487‑M2/23‑1 (MQ=255)                     cggaatccaccaacgcttcagcgtaaaaacggcctaacagtgccagatcgcgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTc                                                                                                                                                                                                                                                                               <  1:41101‑M2/30‑1 (MQ=255)                                 acacttcagcgtaaaacaggcctaaacatgacagatcgcgcccggtattacacagcccggctttgaagaaataggggattttgcgcccggagttatgagtaaactcgccaaactttaacacctgcttgcgaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc                                                                                                                                                                                                                                                                   <  2:556748‑M2/42‑1 (MQ=255)                                       cagcgtaaaaacggcctaacagtgccagatcgcgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcctggatttcagcgtaaactcgccaaactttaacacctgctttctaagcgcaaattcaataaaccgtcgccgatagggtttcatgccttccctcctcatcttaattttctacagacaaaaaaaagcggcattatcagtagacttcaaaattcgtttgacttcgccgccttatgtCGTCCACTTCCCTtcaattatgcgcacgcctctgttctgcactccgtt                                                                                                                                                                                                                                                             >  2:347730‑M2/254‑284 (MQ=255)                                           gtaaaaacggcctaacagtgccagatcgcgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcaggttgccagcgccgccttctgcCGTCCCCTGCACTTCACTGATGCGCCCGTCTTCGCTCATCACTACCGTCATg                                                                                                                                                                                                                                                         >  2:234944‑M2/250‑301 (MQ=255)                                           gtaaaaacggcctaacagtgccagatcgcgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgacatggtttcatgccttcgcccctcatcttacttttctacagacaataaaaatgccactcatcagtcgcccataaaatcattcttccagcgccgccttctgcCCTCCCCTCCACTGCCATGTTGCTCCCGTTCTCGGTCCTCACTACGCTCatc                                                                                                                                                                                                                                                         >  2:57307‑M2/250‑300 (MQ=255)                                            taaaaacggcctaacagtgccagatcgcgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgatgatatggtttcatgccttcgctcctcatcttacttttctacagaccaaaaaaacgcgactcatcagtcgccttaaaaatcagtttactagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCTCTCTTCGGTCATCACTACTTTCATGt                                                                                                                                                                                                                                                        >  1:397535‑M2/249‑301 (MQ=255)                                                   ggcctaacagtgccagatcgcgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtctc                                                                                                                                                                                                                                                 <  1:161178‑M2/60‑1 (MQ=255)                                                        aacagtgccagatcgcgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCgg                                                                                                                                                                                                                                            >  1:281090‑M2/237‑301 (MQ=255)                                                         acaggtccatatcgcgcccgggattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGc                                                                                                                                                                                                                                           <  1:407861‑M2/66‑1 (MQ=255)                                                             tgccagatcgcgcccggtattaaacagcccggcgttgacgaaataggggcttttgcgcccggatttcagcgtacactcgccaaaatttaacacctgcttgctaagcgcaatttcaataaactggcgctgatctggattcatgccttcgctcctcctcttacttttctacagcccaaaaaaaggctactcatcagtcgcctaaaaaaacagtttgccagggacgccttatgcCGTCCCCTGCACTTCAATGATGAGCCCGTATTCGGTCATCACGACGTTCCCGTAGGACTATGTGgcaggg                                                                                                                                                                                                                                       >  2:86414‑M2/232‑299 (MQ=255)                                                              gccaggtcgcgcccggtatgaaacagcccggcgttgaagaaatagtgtcttttgcgcccgaatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaatcaactggcgctgttatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCagag                                                                                                                                                                                                                                       <  1:551904‑M2/70‑1 (MQ=255)                                                                   atcgcgcccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctccCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGCCATCCCTACGTTCATTTCGGTCCCtgccgcagagctttcc                                                                                                                                                                                                                                 >  2:65413‑M2/226‑295 (MQ=255)                                                                       actccgatattaaaccacccggcgtttaagaaataggggcttttgcccccggattttagcttaacctcccccaactttaccaccggcgtgctaagcgcaaattcaatagtctggcgctaatatggtttcatgcctgcgctcctcatcttactgttctacaggcaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACg                                                                                                                                                                                                                              <  2:388224‑M2/79‑1 (MQ=255)                                                                          ccggtattaaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattccataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTACCCTGCTCTTCAATGATGCGCCCGTCTTCGGTCATTAATACGTTCATGTCGGTCTCTGCggcagagtctttcacgagct                                                                                                                                                                                                                          >  1:388316‑M2/219‑292 (MQ=255)                                                                                  aaacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataacctggcgctgatatggtttcatgccttcgctcctaatcttacttttctacagacaaaaaaaaggcaactcatcagtcgccttaaaaatcagtttgcaagcgccgacttctgcAGTCCCCTTCCATTCAATGATTCCGCCGTCTTCTGGCATCACTTCATTCATTTTTGTCCCTTCGGCAGATTCTTCAACTTATTCCTGAt                                                                                                                                                                                                                    >  1:376584‑M2/211‑299 (MQ=255)                                                                                   aacagcccggcgttgaagaaataggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCCTCACTACGTTCCTGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCCGATCGc                                                                                                                                                                                                                 >  1:26724‑M2/210‑301 (MQ=255)                                                                                           ggcgttgagcaaataggggcttttgccccctgatttcagcgtaaactgcccaaactttaaaacctgcttgctaagcgcaaattcaataaactggcgctgatatgttttcaggccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCt                                                                                                                                                                                                         <  2:362826‑M2/100‑1 (MQ=255)                                                                                                    gacatatgggctttttcgccctaatttcaacgtaaacactccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccgtcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTc                                                                                                                                                                                                <  2:102885‑M2/109‑1 (MQ=255)                                                                                                        tatgggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactgtcgctgatatggtttcatgccttctctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcggtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTca                                                                                                                                                                                               <  1:129607‑M2/110‑1 (MQ=255)                                                                                                        taggggcttttgcgcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATTCCCCCGTCTTCGGCCCTCACTACGTCCACGCCGGTCTCTGCGGCCGAGTCTTCAACGTATTCCACATCCCACACCCCTTCCCCGTCca                                                                                                                                                                                               >  2:129576‑M2/189‑298 (MQ=255)                                                                                                                     gcccggatttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCATATCGCAAACCGCTTCGCCGTTCACATTTCCGACAGAAAc                                                                                                                                                                               >  1:442944‑M2/176‑301 (MQ=255)                                                                                                                         ggatttcagcgtacactcgccaaactgtaacacctgcgtgctaagcgcaaatgcaatcaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCg                                                                                                                                                                           <  1:235008‑M2/130‑1 (MQ=255)                                                                                                                         cccgatcttcgtaacctcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCg                                                                                                                                                                           <  1:427872‑M2/130‑1 (MQ=255)                                                                                                                            tttcagcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAATACGCAACCCGCTTCGCCGCTCACAATTCCGACAGAAACTCCGgcc                                                                                                                                                                        >  2:46932‑M2/169‑300 (MQ=255)                                                                                                                                 gcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCCTGTCGGTCTCTGCGGCAGCGTCTTCACCGTATTCCAGATCGCAAACCGCTTCGCAGTTCACAATTCCGCCAGAAACTGAGGATACcac                                                                                                                                                                   >  1:262211‑M2/164‑300 (MQ=255)                                                                                                                                 gcgtaaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAgaaactgcgagatcggg                                                                                                                                                                   >  2:427772‑M2/164‑293 (MQ=255)                                                                                                                                     aaactcgccaaactttaacacctgcttgctaagcgcaaattcaataaactggcgctgatctggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATcc                                                                                                                                                                 <  1:65425‑M2/140‑1 (MQ=255)                                                                                                                                                                 ctaagcgcaaattcaataacctggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAt                                                                                                                                                                                                                    <  2:246110‑M2/89‑1 (MQ=255)                                                                                                                                                                 ctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAt                                                                                                                                                                                                                    >  1:246179‑M2/132‑220 (MQ=255)                                                                                                                                                                   tccgctttcttcaataatctggccgctttatggtttccttcctccgccccccaccttacttttctacagacaaaaataaggccactcatcagtcgccttaaaaatccgtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCg                                                                                                                                    <  2:9204‑M2/169‑1 (MQ=255)                                                                                                                                                                     gcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCCTCCCTTTCCTCGGATAGGTTTTCACCTAGCCGTTTTc                                                                                                                               >  2:4062‑M2/128‑301 (MQ=255)                                                                                                                                                                       acaaagtcaaacacctgtcctagatatggtttcatgccttcgctcctcatcttactttactccagacaaaaaaaaggcgactcaacagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTcca                                                                                                                             <  2:26722‑M2/176‑1 (MQ=255)                                                                                                                                                                           attcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACGGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCg                                                                                                                                    >  1:9204‑M2/122‑290 (MQ=255)                                                                                                                                                                                         cacaaagaggttttccctgcttcctctctcctcttccttatcatcagtcaaaaaaaaggcgactcatcatttgccttaaaacacagtgtgcgcgcgccgccttctgcCGTCCCCTGCACTTCAATGTTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCa                                                                                                            <  2:442836‑M2/193‑1 (MQ=255)                                                                                                                                                                                                                gctcctcatcttacttttctatagaccaaaaaaaggcgactcatcagtcgccttaaagatcagtctgccagcgccgccttctgcCGTCCCCTGCACTTCAATGAGGCGCCCGTCTTCGGTCATCACTACTTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCAcc                                                                                     <  1:347819‑M2/216‑1 (MQ=255)                                                                                                                                                                                                                 ctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTCCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCg                                                                                   >  1:24709‑M2/84‑301 (MQ=255)                                                                                                                                                                                                                  cgctcatcctacatgtacacagacaaaaaaaaggcgactcctcagtcgccttaaaaatcagtttgccggcgccgccttctgcCGACCCCTGCACTACAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTAATCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTGTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGt                                                                                  <  1:57315‑M2/219‑1 (MQ=255)                                                                                                                                                                                                                         cttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCCCATCTCCCGGCGCCCCGCCGGCACCCGTAAtcgcc                                                                           >  2:86462‑M2/76‑299 (MQ=255)                                                                                                                                                                                                                                     caaccaaaaaaaacgcgactcctcagtcgccttaaaaatcagtgtaccagccccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGCTGTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGACGCGGTACGCGTg                                                               <  2:281010‑M2/238‑1 (MQ=255)                                                                                                                                                                                                                                       aacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGACGCGGTACGCGTGcc                                                             <  1:86477‑M2/240‑1 (MQ=255)                                                                                                                                                                                                                                         caaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGACACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCGACCACCGCCCCGCAGGCCCCCGTCATCGACGCGGTACCCTTGccac                                                           >  2:435712‑M2/60‑301 (MQ=255)                                                                                                                                                                                                                                         caaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGACGCGGTACGCCTGccac                                                           >  1:113764‑M2/60‑301 (MQ=255)                                                                                                                                                                                                                                         caaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACCCGGGCCCCCGTAATCGACGCGGTACGAGggcccc                                                           >  1:276841‑M2/60‑299 (MQ=255)                                                                                                                                                                                                                                         caaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGGTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCACCTCCCAGCGCCAAGCCGGCACCCGTAATCCAcgcggtacgccggcccc                                                           >  2:255365‑M2/60‑294 (MQ=255)                                                                                                                                                                                                                                              aaaaggcgccgcagcagtcgccttaaaaatcagtgtgccagcgccgccttctgcCGGCCCCTGCACTTCAAGGATGCGCCCGTCTTCGGTCATCACTACTTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGACGCGGTACGCGTGCCACCATCa                                                      <  1:46939‑M2/247‑1 (MQ=255)                                                                                                                                                                                                                                                      ccccaccgtccaccttaaaaaccgttttgccagcgccgccgtctgcCGTCCCCTGCACTTCACTGATGCCCCCGTCTTCGGTCATCACTCCTTTCCTGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGACGCGGTACGCGTGCCACCATCAGCCTGAAg                                              <  1:195991‑M2/255‑1 (MQ=255)                                                                                                                                                                                                                                                      actcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCACTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGTATCTACCAGCGCCACGCAGGCACCCGTAATCGACGAGGTAGTCGTGacaccatccacctta                                                >  1:389011‑M2/47‑292 (MQ=255)                                                                                                                                                                                                                                                           ccatcgcccttaaaatacaatttcccaggccccccttctgcCGTCCCCTGCCCTTCAATTGTGCGCCCGTCTCCGGTCTTCTGTACGTTCATGTCGGTCTCTGCGGCAGAGTCGTCAACGTATTCCAGTTCGCAAACCGCTGCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGACGCGGTACGCGTGCCACCATCAGCCTGAAGCACGt                                         <  2:262137‑M2/260‑1 (MQ=255)                                                                                                                                                                                                                                                              gtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAAGCACCCCTAATCGACGCGGTACGCGTGCCACCATCAGCCTGAAGCCCGTCGc                                      >  1:278959‑M2/39‑301 (MQ=255)                                                                                                                                                                                                                                                                   cttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCACAAACCGCTCCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCATTTCATCGGATGGGTTTTCAGCTTGCCGTTTTCCCCCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGCCACCCGTAATCGACGCgg                                                                       >  1:223368‑M2/34‑263 (MQ=255)                                                                                                                                                                                                                                                                    ttaaaaacctgtttgccctccccgccttctgcCGTCCCCTGCACTTCAAAGCTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGACGCGGTACGCGTGCCACCATCAGCCTGAAGCACGTCGCAGTcc                                 <  1:4062‑M2/268‑1 (MQ=255)                                                                                                                                                                                                                                                                       aaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCCCCCGTAATCGACGCGGTACGCGTGCCACCATCCGCCTGAAGCACGTCGCAGTCCcgcg                             >  1:202525‑M2/30‑301 (MQ=255)                                                                                                                                                                                                                                                                            cagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGACGCGGTACGCGTGCCACCCTCAACCTGAAGCACGTCGCAGTCCAGCGTAATg                        >  1:252264‑M2/25‑301 (MQ=255)                                                                                                                                                                                                                                                                             gggttaccagcgccgccttcttcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTCCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGACGCGGTACGCGTGCCACCATCAGCCTGAAGCACGTCGCAGTCCAGCGTAATgg                       <  2:24707‑M2/278‑1 (MQ=255)                                                                                                                                                                                                                                                                                  ccccgcgccgccttctgcCGCCCCCTGCACTTACATGCTGCGCCCGTCTCCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCCGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGACGCGGTACGCGTGCCACCATCAGCCTGAAGCACGTCGCAGTCCAGCGTAATGGTGAAc                  <  2:278879‑M2/283‑1 (MQ=255)                                                                                                                                                                                                                                                                                                  gcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGACGCGGTACGCGTGCCACCATCAGCCTGCAGCACGTCGCAGTCCAGCGTAATGGTGAACTCACCCAGCGCTTtcc  >  1:345401‑M2/3‑300 (MQ=255)                                                                                                                                                                                                                                                                                                  gcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGACGCGGTACGCGTGCCACCATCAGCCTGAAGCACGTCGCAGTCCCGCGTAATGCAGAACTCACCCAGCGCTTTc   >  1:413655‑M2/3‑300 (MQ=255)                                                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                                           AACAGCCCGGCGTTGAAGAAATAGGGGCTTTTGCGCCCGGATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCCGTTTTCCACCAGCTTCTGTAGCGCATCTACCAGCGCCACGCAGGCACCCGTAATCGACGCGGTACGCGTGCCACCATCAGCCTGAAGCACGTCGCAGTCCAGCGTAATGGTGAACTCACCCAGCGCTTTCA  >  NC_000913/3815650‑3816239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑