mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 26.5% | 200.2 / 61.9 | 121 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 22.5% | 107.7 / 33.1 | 93 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 22.5% | 89.4 / 44.8 | 93 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 184 (1.000) | 32 (0.240) | 15/440 | 14.6 | 20.1% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 119 (0.880) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 4542682 = | 316 (1.720) | 12 (0.070) | 10/582 | 21.9 | 3.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 301 (1.690) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 2092986 = | 155 (0.840) | 4 (0.020) | 4/572 | 26.3 | 2.6% | coding (589/1071 nt) | hisC | histidinol‑phosphate aminotransferase |
| ? | NC_000913 | = 2092981 | 150 (0.860) | coding (584/1071 nt) | hisC | histidinol‑phosphate aminotransferase | |||||
| * | ? | NC_000913 | = 42998 | 204 (1.110) | 4 (0.020) | 4/580 | 26.6 | 2.0% | coding (596/771 nt) | fixA | anaerobic carnitine reduction putative electron transfer flavoprotein subunit |
| ? | NC_000913 | = 43074 | 204 (1.150) | coding (672/771 nt) | fixA | anaerobic carnitine reduction putative electron transfer flavoprotein subunit | |||||
| * | ? | NC_000913 | = 4002157 | 154 (0.840) | 3 (0.020) | 3/586 | 27.8 | 1.9% | coding (732/951 nt) | corA | magnesium/nickel/cobalt transporter |
| ? | NC_000913 | = 4002224 | 152 (0.850) | coding (799/951 nt) | corA | magnesium/nickel/cobalt transporter | |||||