| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 1,544,782 | 0 | G→. | 100.0% | 8.8 | 2 | pseudogene (933/951 nt) | yddK | pseudogene, leucine‑rich protein; putative glycoportein |
| Rejected: E-value exceeds prediction threshold. | ||||||||||
| Reads supporting (aligned to +/- strand): new base (1/1): ref base (0/0): total (1/1) | ||||||||||
GTTTTATTATGGGGAATAAAGTTCCAATATCGGATGTATTATTA > NC_000913/1544772‑1544815 | gTTTTATTAT‑GGGAATAAAGTTCCAATATCGGATGTAttatta < 1:41916/43‑1 (MQ=255)gTTTTATTAT‑GGGAATAAAGTTCCAATATCGGATGTAttatta > 2:41917/1‑43 (MQ=255) | GTTTTATTATGGGGAATAAAGTTCCAATATCGGATGTATTATTA > NC_000913/1544772‑1544815 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |