New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1433090 =	50 (0.670)	4 (0.060)	4/554	9.1	6.9%	coding (585/591 nt)	pinR	Rac prophage; putative site‑specific recombinase
	?	NC_000913	1433181 =	60 (0.830)					coding (494/591 nt)	pinR	Rac prophage; putative site‑specific recombinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

CAACGGAGGAAGAAATCTCGTTGCTGGAAGCATGGAAAAAGTATCGGGTATTGCTGAACCGTGTTGATACGTCAACTGCACAGGATATTGAATGGCCAGCACTGCCGTAGGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTACTATCCCGGAATGAGTGCGTTCAAGTAAAAGGTCTCGTTCAAATTCAGCGACTGCTGAAATTACTTGCATCATCATTTTTCCTGTTGGACTGGTCAGGTCAATGCCACCCAATGCTAAGCAATGC  >  NC_000913/1432877‑1433390                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                                             cAACGGAGGGAGAAATCTCGCTGCTGGAAGAATGGAAAAAGTATCTGGTATTGGTGCACCTTTTTGATACGTCAACTGCACAGGATATTGAATGGCGGTCAATGCCGTAGGGTAAAATATATAAATTCTATATTTAGATGTATTTTTCCGTTCACGGCCAGGAAGGGGCCTTGGAAGCCGGAACACATTTCATCCCGAGATCGTTTTTTATATGTTAGGGGTTAGACATTTTGGTTTGTACGTTATAATGGTTATCGCTGAGGCTTTGAAtgtgcggtcaattcgcgtgctcctgtaccct                                                                                                                                                                                                                       >  1:117180/1‑271 (MQ=0)                        cTGGAAGCATGGAAAAAGTATCGGGTATTGCTGAACCGTGTTGATACGTCAACTGCACAGGATATTGAATGGCCAGCACTGCCGTAGGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTATTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTTCCGGGCAATGGCACTTATACTTACACTTGACTTAATTCTTTCGAATaccac                                                                                                                                                                                                >  2:126467/1‑301 (MQ=11)                         gggAAGCATGGAAAAAATATTGGGGATTGTTGAACCGTGTTGATACGTCAACTGCACAGGATATTGAATGGCCAGCACTGCCGTAGGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATaccacc                                                                                                                                                                                               <  2:558602/300‑1 (MQ=11)                             cgccgcacttacgatcttgggtttGCTGAACCGGGTTTATACGTTAACTGTACAGGATATTTAATGGCCAGCACTGCCGTAGGGTAAAACAGATAAATTCTGTAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGtt                                                                                                                                                                                           <  1:636296/279‑1 (MQ=11)                              gCATGGAAAAAGTATCGGGTATTGCTGAACCGTGTTGATACGTCAACTGCACAGGATATTGAATGGCCAGCACTGCCGTAGGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGACAGGTGTCTGAAGTGTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCTCGGGAAATGGTACTTATACTTACACATGACTTAATACGTTGGAATAGCACTTGtgt                                                                                                                                                                                          >  2:12666/1‑299 (MQ=11)                                             cgtgTATTGCTGAACCGTGTTGATACGTCAACTGCACAGGATATTGAATATCCAGCGATGCCGTAGGGTAAATCATATAGAGTCTTAATTTCGATTTATCTTTCCATTTACGGCAAGGAAGGAGGCTTCGAATACGTAAAGCAGCTCACACCGAGATTATTTTTTATATTTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAGTGCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTa                                                                                                                                                                            <  1:229677/297‑1 (MQ=11)                                             cGGGAATTTCTGAACCGGGTTGATACGTCAACTGCAAAGGAAATTGCATGGCCAGCACTGCCGTATGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTa                                                                                                                                                                            <  2:223327/300‑1 (MQ=2)                                              gggTATTGCTGAACCGTGTTGATACGTCAACTGCACAGGATATTGAATGGCCAGCACTGCCGTAGGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGCGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACAACCTGtt                                                                                                                                                                                           >  2:636476/1‑284 (MQ=14)                                                        gAACCGTGTTGATACGTCAACTGCACAGGATATTGAATGGCCAGCACTGCCGTAGGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACCTAGGAGGtt                                                                                                                                                                >  2:103679/1‑300 (MQ=14)                                                        gAACCGTGTTGATACGTCAACTGCAAAGGATATTGAATGGCCAGCACTGCCGTAGGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGATTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGTCACTTATACTTACACCTGATTTAATTCGTTCGAGTACAACCTGTTTCTGTTCTTAATTTAACACcggagctt                                                                                                                                                                >  1:665901/1‑298 (MQ=255)                                                                 tGATACGTCAACTGCACAGGATATTGAATGGCCAGCACTGCCGTAGGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAAc                                                                                                                                                       >  2:60790/1‑301 (MQ=31)                                                                   aTACGTCAACTGCACAGGATATTGAATGGCCAGCACTGCCGTAGGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCTCGGGCAATGGCACTTATACTTACCCCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACCGGAGGTCGACCAAAACgg                                                                                                                                                     >  1:483732/1‑300 (MQ=14)                                                                   aTACGGCAACTGTATAGGATATTGAATTGCCACCACTGCCTTAGGTTAAAACATTTAAATTCTTTAATTAGATGTATCGTTCCATTTACGGCAATGAAGGGTGCTTGGAAGACGTAAAGCATTTCATACCGAGATTATTTTTGATATGTCAGGTGTCTGAAGTTTTTCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGTGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACg                                                                                                                                                      <  2:652369/300‑1 (MQ=11)                                                                       gTCAACTGCACAGGATATTGAATGGCCAGCACTGCCGTAGGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTc                                                                                                                                                                                         <  2:47885/261‑1 (MQ=31)                                                                       gTCAACTGCACAGGATATTGAATGGCCAGCACTGCCGTAGGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTc                                                                                                                                                                                         >  1:47873/1‑261 (MQ=31)                                                                       gTCAACTGCACAGGATATTGAATGGCCAGCACTGCCGTAGGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGAATCCCAAACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCAGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCTCCTGTTTCTGTTGTTCATTTAACACAGTAGGTCGACCAAAACTTTTcc                                                                                                                                                 >  2:481040/1‑301 (MQ=2)                                                                         cAACTGCACAGGATATTTAATGGACAGCACTGCCGTAGGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCt                                                                                                                                               <  2:43304/301‑1 (MQ=14)                                                                         aaacttaacaGGATATTGAAAGGCCAGCACTTCCGTAGGGGAAAACATATAAATTCTATAATTAGAGTTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACATCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCt                                                                                                                                               <  1:683915/294‑1 (MQ=9)                                                                                          gAATGGCCAGCACTGCCGTAGGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTTTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGTCttttcc                                                                                                                              >  2:607395/1‑299 (MQ=14)                                                                                          aaaTGGCCAGCAATGCCGTAGGGTAAAACATATAAATTCTATAATTAGTTGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTAc                                                                                                                              <  1:60776/300‑1 (MQ=14)                                                                                               gCCAGCACTGCCGTAGGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCTGGCTCTTACTATcc                                                                                                                         >  2:440187/1‑301 (MQ=14)                                                                                                    cattGCCGTATGGTAAAACATATAAATTCTAAAATTAGAGGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTACTATCCCGGaa                                                                                                                    <  1:592565/298‑1 (MQ=14)                                                                                                    aaCTGACGTAGGGTAAAACATATAAATTTAATAAGTAGATGGATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTACTATCCCGGaa                                                                                                                    <  1:482121/300‑1 (MQ=9)                                                                                                                gTAACACCTATAAATGCTATAATTAGATGTATGTTTCCATTTACGGCAAGGAAGGGGGCTTTGAAGACGTAAAGCATCTCACATCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTACTATCCCGGAATGAGTGCGTTCa                                                                                                        <  1:607226/301‑1 (MQ=9)                                                                                                                   aaaCATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTTCCGCGAGGTTTTGAATTCCCGGGCAATGGCCCTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTATTCATTTAACAAAGGAGCTCGAGCCACCCGTTTCACTGCCCCGTGGCATCTTACGATCCTGGAATgccggctttcaact                                                                                                     >  1:581260/1‑288 (MQ=11)                                                                                                                    aaCATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGTCGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGTCCAAACCGTTTCCCTGCGCCGCGGGCCCTTACTATCCCGGAATGCGTCCGTCCACGt                                                                                                     >  1:530897/1‑300 (MQ=9)                                                                                                                          taAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAACATGGTTTGCCGTGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACATGACTTAATTCGTTCGAATACGACCTGTTTCTGTTCTTCATTTACAACAGGAGTTCGACCAAAACGTTTCCCTGCGCCCCGGGCTACTTCTATCCCGGCATGATTGCTGTCAAGTAAAATGt                                                                                              >  1:578566/1‑301 (MQ=11)                                                                                                                           aaaTTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGAcc                                                                                                                                                            <  2:318092/238‑1 (MQ=32)                                                                                                                           aaaTTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGAcc                                                                                                                                                            >  1:317991/1‑238 (MQ=32)                                                                                                                                     aTTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACGTACACCGGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCTTTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCCCTTACTATCCCGGAATGAGGTCTTTCAAGTAAAATGTCTTGtttcatt                                                                                   >  1:317034/1‑296 (MQ=11)                                                                                                                                      ttAGATGTATCTTTCCATTTACGGCAAGGTAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTa                                                                                                                                                                            >  2:160236/1‑211 (MQ=14)                                                                                                                                      ttAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTa                                                                                                                                                                            <  1:160194/211‑1 (MQ=31)                                                                                                                                           tGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTTAATTCCTGGGCAATGGCCCTTATACTTACACCTGACTTAATTCGTTCGAATACCACGTGTTTTTGTTACTCATTTAACACAGGAGGTCGACCAAAAAGGTTGCCTGCGCCGCGGGCTCTTCCTATACAGGAAGGAGTGAGTTGAAGTAAAATGTCTCGTTCAAATTCAggg                                                                             >  1:101105/1‑299 (MQ=11)                                                                                                                                              aTCTTTCCATTTTCGGCAAGGAAGGGGTCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGTTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTACTATCCCGGAATGAGTGCGTTCAAGTAAAAGGTCTCGTTCAAATTCAGCGAc                                                                           <  1:101582/300‑1 (MQ=14)                                                                                                                                                    ccATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTACTATCCCGGAATGAGTGCGTTCAAGTAAAAGGTCTCGTTCAAATTCAGCGACTGCTGaa                                                                    <  2:666086/301‑1 (MQ=31)                                                                                                                                                      aTTTACTGCAATGGAAGGGGTTTTGAAGACCTAAAGCATCTAACACCTAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCGCTTAAAATGGTTTGCCGCGAGGTATTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTACTATCCCGGAATGAGTGCGTTCAAGTAAAAGGTCTCGTTCAAATTCAGcagtcgctgaatt                                                                  <  1:126431/301‑13 (MQ=11)                                                                                                                                                      aTTTACGGCAAGGAAGGGGGCTTGGAAGAAGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAACATGGTTTGCCGCCAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTACTATCCCGGAATGAGTGCGTTCAAGTAAAAGGTCTCGTTCAAATTCAGcagtcgctgaatt                                                                  <  2:562790/301‑13 (MQ=9)                                                                                                                                                            gttaaggaaagGGGTTTGGAAGACCTAAAGCAGTTCACTCCGTGATTTTTTTTTATATGTCAGGTTTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTACTATCCCGGAATGAGTGCGTTCAAGTAAAAGGTCTCGTTCAAATTCAGCGACTGCTGAAATTACTTg                                                            <  1:103649/298‑1 (MQ=255)                                                                                                                                                            ggCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTACTATCCCGGAATGAGTGCGTTCAAGTAAAAGGtctc                                                                                           <  2:561832/270‑1 (MQ=32)                                                                                                                                                                                   cGTAAAGCATCTCACACCGAGATTATTTTTTATATGTTCGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGTGCAATGGCACTTATACTTACACTTGACCTAATTCGTTCGATTACCACCTGTGTCTGTTCTTCATTTAACACAGGAGGTCTACCAAAACGTGTCCCTGCGCCGCTCGCTATTACTATCCCGGAATGCGTGCGTCCAACTACAAGGCTGCGGTCCAATTCATCAACTTCTGAATTTCCTTGCAATAACCTTTTTcattttttat                                     >  1:360092/1‑292 (MQ=11)                                                                                                                                                                                   cGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGAGGGCTCTTACTATCCCGGAATGAGTGCGTTCAAGGAAAAGGTCGCGTTCAAATTCAGCGACTGCTGAAATTACTTGGATCATCATTTTTCCTGTTGGAc                                     >  2:151489/1‑301 (MQ=14)                                                                                                                                                                                         gCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTACTATCCCGGAATGAGTGCGTTCAAGTAAAAGGTCTCGTTCAAATTCAGCGActgct                                                                       >  1:660153/1‑261 (MQ=32)                                                                                                                                                                                         gCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTACTATCCCGGAATGAGTGCGTTCAAGTAAAAGGTCTCGTTCAAATTCAGCGActgct                                                                       <  2:660337/261‑1 (MQ=32)                                                                                                                                                                                               cacaCCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTACTATCCCGGAATGAGTGCGTTCAAGTAAAAGTTCCCGTTCAAATTCAGCGACTGCTGAAATTACTTTCATCATCATTTTTCCTGTTGGatatcggaagggcg                         >  1:347123/1‑288 (MQ=9)                                                                                                                                                                                               cacaCCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTACTATCCCGGAATGAGTGCGTTCAAGTAAAAGGTCTCGTTCAAATTCAGCGACTGCTGAAATTACTTGCATCATCATTTTTCCTGTTgg                                       <  2:347233/287‑1 (MQ=32)                                                                                                                                                                                                 cacCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGATGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTACTATCCCGGAATGAGTGCGTTCAAGTAAATGGTATCGTTCAAATTCGGCGACTGCTGAAATTACTTTCATCATCATTTTTCTTGTTGGATTGGTCTGTTCAATg                       >  1:287752/1‑301 (MQ=255)                                                                                                                                                                                                    cGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTACTATCCCGGAATGAGTGCGTTAAAGTAAAAGGTCTCGTTCAAATTCAGCTACTGCTGCACTTACTTGCATCATCATTTTTCCTTTTGGCATGGTCCGGTCAATGccc                    >  2:111426/1‑300 (MQ=9)                                                                                                                                                                                                                  atatGTCAGGTTTATGAAGGTCTCGTTTTGCTTTTAAAATGGTTTGCCTCGCGGTTTTGCATTCCCTGGCAATGTCACTTATGCTTTCCCCTGACTTAAATCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGACGTCGACCAAAACGTTTCCCTGCGCAGCGGGCTCTTACTATCCCGGAATGTGTGCGTTCAAGTAAAAGGTCTCGTTCAAATTCAGCGACTGCTGAAATTACTTGCATCATCGTTTTTCCTGTTGGACTGGTCAGGTCAATGCCACCCAATGCTAAGc       <  1:480909/300‑1 (MQ=11)                                                                                                                                                                                                                     tGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGttc                                                                                                                                                                                    <  1:7660/124‑1 (MQ=32)                                                                                                                                                                                                                     tGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGttc                                                                                                                                                                                    >  2:7660/1‑124 (MQ=32)                                                                                                                                                                                                                      gTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTACTATCCCGGAATGAGTGCGTTCAAGTAAAAGGTCTCGTTCAAATTCAGCGACTGCTGAAATTACTTGCATCATCATTTTTCCTGTTGGACTggtca                               <  2:644420/272‑1 (MQ=32)                                                                                                                                                                                                                      gTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTACTATCCCGGAATGAGTGCGTTCAAGTAAAAGGTCTCGTTCAAATTCAGCGACTGCTGAAATTACTTGCATCATCATTTTTCCTGTTGGACGggtcaagatcggaaaagcgtcgtgttgggaaagg  >  1:644239/1‑272 (MQ=11)                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                                             CAACGGAGGAAGAAATCTCGTTGCTGGAAGCATGGAAAAAGTATCGGGTATTGCTGAACCGTGTTGATACGTCAACTGCACAGGATATTGAATGGCCAGCACTGCCGTAGGGTAAAACATATAAATTCTATAATTAGATGTATCTTTCCATTTACGGCAAGGAAGGGGGCTTGGAAGACGTAAAGCATCTCACACCGAGATTATTTTTTATATGTCAGGTGTCTGAAGTTTTGCTTTGGCTCTTAAAATGGTTTGCCGCGAGGTTTTGAATTCCCGGGCAATGGCACTTATACTTACACCTGACTTAATTCGTTCGAATACCACCTGTTTCTGTTCTTCATTTAACACAGGAGGTCGACCAAAACGTTTCCCTGCGCCGCGGGCTCTTACTATCCCGGAATGAGTGCGTTCAAGTAAAAGGTCTCGTTCAAATTCAGCGACTGCTGAAATTACTTGCATCATCATTTTTCCTGTTGGACTGGTCAGGTCAATGCCACCCAATGCTAAGCAATGC  >  NC_000913/1432877‑1433390

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.