| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,191 | 0 | A | C | 30.2% | 41.2 / 20.2 | 53 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base A (22/15); new base C (10/6); total (32/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
GATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑TA‑‑CCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTA > NC_000913/4295892‑4296475 | gATTTAGGGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACGTAAACGGCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTaa < 2:905665/300‑1 (MQ=25) ttctttattGATTCGGTAGGTGTGATAAGTCTTTTATGCCGCTCCCGAATTCACCGCCTATTGCGACGCTTAACCCGTGTTATCAGGCTGGTGGCACACTGCGCAATAGCTTGATTTAGCTTGATTTTGTAGTTCGGATATGGCGTTTACGCCGCGTCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGTCCTACGCCAGACAGCGCAATTGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAAc < 2:1088222/292‑1 (MQ=11) ttAGGGTGATGTTGTAGGTCGGAGAAGGCATTTATGCGGCATCCGAAATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAAcgc < 2:598996/300‑1 (MQ=255) gttGATTTTGTAGTTCGGATAAGGCGTTTATGCCGCATCCTACAGCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTc < 2:576266/297‑1 (MQ=25) cGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCCGATGCG‑ACTCTTACCGCGTCtt > 2:1089133/1‑301 (MQ=25) ttGGAGGGCGGATAAGGCTGTTATTCGGCGTCCGGCACCACCGACTGATGACAAGCTTACAGCGTCTTGTCAGGCCTACGCCAGACAGTGCAATATACTGGTTTAGCTGGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGAAAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAgg < 2:77220/300‑1 (MQ=11) gggcGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATAAG‑ACGCGTTAAGCGTCGCATCAGGcgttga < 2:241012/298‑6 (MQ=255) gTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACCCCCGACCGCGCAATAGCCTGATTTACCGTGATTTCGTAGTTCGGAAAATGCCTTCATGCCGCAGCCCCAATCAATCCTTAATGCG‑CCTCATAAGGCGTTTTCTCAGGCTTAAGc > 1:610067/1‑301 (MQ=11) gggATAATGCGTTTATGCCGCATCCGACATCAACGCTCGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGGGCAATAGGCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCa < 2:533701/300‑1 (MQ=255) gATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGCTTTAGCGTGATTTTGTAGGTCGGATAAGCCGTTTCAGCCGCATCCGCCATCAACACCGGTTGCG‑ACGCTTCACGAGTCTTATCACGCATCCGCTAgc > 1:875985/1‑300 (MQ=11) ggCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCTTTTATGCCGCATCCGCCATCAACGCCTGATGCG‑ACGCTTACCTCGTCTTATCAGGCCTACGCCACACCgcc > 2:14569/1‑300 (MQ=255) gtgaggccgcatccgcactgcactgctggagCGAAGTTTATCGCGTCTTATCGTGGCTACGCAAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTGTCCGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAAt < 2:267959/271‑1 (MQ=11) cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGCTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTCTGCCCCATCCCACATAAACGCCTGCTGCG‑ACGCTTGAGCCCTCCTCTCCAGCCTCTCCCCGACAGCGCAAAATCCTGGTTCTGCCTGAtt > 1:127112/1‑301 (MQ=11) cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGAGTTTATGCCGCATCCGACATCAACTCCTGATGCG‑CCGCTTAACGCGTCTTATCAGGCCTACGCCAGACCGCGCCATAGCCTGATTAAGCGTGAtt > 2:377778/1‑301 (MQ=255) aCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt > 2:264640/1‑301 (MQ=34) ccTGATAAGACGCGTTAAGCGTCGCATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAccg > 2:812303/1‑273 (MQ=255) tAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTCCGCCAGACAGCGCACTATCCTGATTTAGCGTGATTTTGTAGGTCGGATAATGCGTTTATGCCGCATCCGACCTCAACGCCTGACGCG‑TCGCTTAACGCGTCTTTTCAAGCCTCCTCCCAACCGAGGAACAGCCTGCGTTAGCGTAAtttggccagtccgataggggg > 1:175158/1‑283 (MQ=11) cgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGCTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTac > 2:435474/1‑300 (MQ=17) aTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATATCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATAAGGCCTACGCCAGACAGCCCACTAGCCTGCGTTACCGTGATTTTGTAGGTAGGATACGGCGTTTAG‑Gcctcc > 2:670398/1‑298 (MQ=11) aTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTGACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGACTTAGTGGGTCGGATAAGGCGTTTAc‑gccgcc > 1:424624/1‑300 (MQ=16) ggcctaacccataaggcgaAATAGGTTGATTTAGCATGATTTTGTAGGGCGGAGAAGGCGTTTACGCCGCAACCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAC‑GCCGCATCCg < 2:737460/286‑1 (MQ=11) aCGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGGG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAC‑GCCGCATCCGACATc > 2:1037494/1‑301 (MQ=25) aCGCCAGACAGCGCAATAGACTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGGATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAC‑GCCGCATCCGACa < 2:268673/299‑1 (MQ=25) ccgaacagcctaaactccTGTTTTCGCGTGATTTTTGAGTTAGATTAAGGGTTGTCCGCCGCGTCCGACCTCACCGCCTGATGGGACGCTTGCCGCGTCTGTTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGGGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAC‑GCCGCATCCGACATCaat < 1:1107360/285‑2 (MQ=11) ccAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCCTCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTc > 2:783511/1‑212 (MQ=21) gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACCTCAACGCCTGCTGCG‑ACGCTTACCGCGTCTTATCCGTCCTAAGCCAAGCCGCGGTATAGCTTGATTTAGCGGGATTCTGTGGGTCGGTCAAGGC‑TGTATCGCCGCATCGGAccgcaagcgc > 1:73959/1‑292 (MQ=11) gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTGACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGGGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATCAGGTGTTTCTGATGCACGCGACATAAAGGCATGATGGC‑ACGTCTAACGCGTCTTATAACGACTACGACAGACCGCGCTATAGCCTGATTTAGAGTGATTTTGTAGGTCGTAGAGGGGGTTTCT‑GCAGGATTCGACATCacagcg > 2:649226/1‑296 (MQ=11) gcgcAATAGCTTGATTTAGCGTGATTTTGTAGGTCGCAGAAGGCTGTTACGCCGCATCCGACATCAACGCCTGATGGGAGGCTTGACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTTTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAC‑GCCGCATCCGACATCAATGCCTGAt < 2:926152/301‑1 (MQ=11) gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACATCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGCCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTGGTAGGTCGGTTAAGGCGTGTCC‑GCCGCATCCGCAATCAATGCCGGAt > 1:439927/1‑301 (MQ=11) gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTAACAGGCCTACGCCACACAGCCGCATAGCCTGTTTTAGCGTTCATGTGTCGATCGGATCAGGCGGTTAC‑GCCGCGTCCGACactcatgtctg > 1:362391/1‑289 (MQ=11) gcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATACGGCGTTTAC‑GCCGCATCCGACATCACTTCCTGAttc > 2:454395/1‑299 (MQ=19) gCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCa < 2:359069/223‑1 (MQ=33) gCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGACAGACAGCGCa > 1:358989/1‑223 (MQ=18) gCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCC‑ACGCTCAACGCGTCCTATTAGGCCTACGCTAGACAGCGCCAATGCCCGTTTTAGCGCCCCTTCATAGGTCGGATCAGGAGTTTTC‑GCCGCTTCCGCTATCactgcatgtggccacgcc > 1:416713/1‑284 (MQ=11) cggATTTCGCGTGTTTTGCTAGGTCTGATAAGGCTTTTACGCCGCATCCGCAATCAACGCCTGATTCGGCGCTTGACGCGTCTTATCAGTCCTACGCCAGACAGCCCAATAGCCTGATTTAGCGTGATTTTCTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAC‑GCCGCATCCGACATCAATGCCTGATGCGACGCttg < 2:105771/299‑2 (MQ=11) gTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGTGCAATAGCCTCATCTAGAGTGATTTTGTCGGTCGGACAAGGCGTTTAC‑GCCCGATCCCGCATCAATGCCCGATGCGACACttgccgctgcttc > 1:11000/1‑290 (MQ=11) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCCATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTGAC‑GCCGCATCCGACATCAATGCCTGCTGCGACGCTTGCCGCGTCTTATc > 2:1118227/1‑300 (MQ=12) tGTCGGTCGGGAGAGGCGTCTACGCCAGAACCGACAGCACCGCCGGATGCGATGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTTATGTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACTCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCGACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAC‑GCCGCATCCGACATCAATGCCTGATAAGACGCGGCAAGCGTCGCATCAGGc < 2:903389/300‑1 (MQ=11) aGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAC‑GCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTat > 2:928604/1‑300 (MQ=14) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑AAGCTTAACGCGTCTTATCAGGACGACGCCAGCCAGAGCAATAGACGGTCACAGCGTGATTTTGTAGGTCGGATAAGGCGTTTCA‑GCGACATCCGACACTAATGACTGATGCGCCGAttgcagcgagctcggacgatcgtg > 1:92109/1‑279 (MQ=11) ggATTTTGTAGGTCGGATAAGGCGTTTATGCCGCCACCAAAATAAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTCCGCCAGACAGCGCAATAGCCTTATTTAGCGTAATTTTGTAGGTAGGATAAGGCTTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTAt < 2:460316/300‑1 (MQ=11) tAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCg > 2:700207/1‑301 (MQ=2) aGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTACCAGGCCTACGCCAGACAGCGCAGTAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑TACGCCGCATCCGACCTCAATGCCTGATGCGACGCTTGCCGCGTCTTAGCAGGCCTATCTTAACCGtt > 2:89296/1‑301 (MQ=255) ttACGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCCGCTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCTTTCCGCGTCTTCTCCGGCCTATCTTAACCGTTGGTTa > 1:531611/1‑300 (MQ=11) ccGCTTCCTACACCACCCCCTG‑TGCGTACGCTTTCCGCGTCTGACCAGGCCGACGACAGAAAGCGTAATATCCTGATTTAGCGGGATTTTGTAGGTAGGATACGGCGTTTAT‑GCCGCATCCGACATCACCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCAACGGTTaagatag < 1:377694/301‑6 (MQ=11) ccGCATCCGATATTAACGCCGTATGCG‑ACGCTTGCCGCGTCTTATCCGGCCTACGCCAGACAGCGAAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAttttt < 2:165208/301‑1 (MQ=11) cGCATCCGACCGCACTGCCGGAGGCG‑TCGCTTGCGTCGTCTTATCAGGCCTACACCAGCAATCGCAATAGCCTGATTTGACGTGATGTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTc < 1:700044/301‑1 (MQ=11) cccccccaCATCAACGCTTGATGCG‑AAGCTTGCCGTGTCTTATCAGGCCTACGCCAGACAGCGGAATAGCCTGATTTTGCTTGATTTTGTAGGTCGGATAAGGCGTTTAG‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCa < 2:531733/294‑1 (MQ=11) cGACATCAACGCCTGATGCG‑ACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCATGATTTTGTAGGTCGGATAAGGCGTT‑‑TACGCCGCATCCGACCTCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAACctc > 2:927688/1‑301 (MQ=255) cGCCTGAGTAG‑ACGCTTGCCGCGTCTTTTCAGGACTACGCCAGCAAGCGCAATAGCCTGATTTAGCGTGAGTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGCCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGACTACGCCAGACAGCGCAATAGCATGATTTAGCATGATTTTGTAGGTCGGATAAGGCGTT‑‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAccc < 1:927455/301‑1 (MQ=14) gCCTGATGCG‑ACGCTTGCCGCGTCTTATAAGGCCTACGCCAGACAGCGCAATAGCCTGATCTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATTCGACATTCACGCCTGATGTGACGCTTAACGCGTCTTATCAGGCTTACGCTAGACATCGCAATAGCCTGGTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTG‑‑TATGCCGGATCCGACAGAAATGTCCGATGCGTTGCTGGCAGCGTCTTATACGGCCTATCTTACTCGCTGGTTCATTTTTCGAACTTTTcaatcac > 2:766453/1‑295 (MQ=11) gCCTGATGCG‑ACGCGTGCCGCGTCTTATCAGGCCTACGCCATACAGCGCAATATCCTAATTTAGCGTGGTTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCATACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCg < 2:416802/301‑1 (MQ=14) tGATGCG‑ACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCCATCGCCTGATTTAGCGTGATTTTGTAGGTCGGACAATGCGTTGCCG‑‑CCGTAACCGACATCAATGCCTGACGCGACGATTGCCGTGTCTTATCCGGCCTCTTTCACCCGTCGGTTCATTTTTCCAAACCTTctacccaggtt > 1:684101/1‑291 (MQ=11) tGATGCG‑ACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑TACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATTCTGCCTTTCTTAACCGTTGGTTAATTTTTTAAACTATTcaaccccagtt > 2:826312/1‑292 (MQ=11) | GATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑TA‑‑CCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTA > NC_000913/4295892‑4296475 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |