| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 26.3% | 73.2 / 26.1 | 63 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Reads supporting (aligned to +/- strand): ref base T (21/21); new base C (8/7); total (31/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.79e-01 | |||||||||||
ATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑A‑‑CCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAG > NC_000913/4295974‑4296559 | aTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATATCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATAAGGCCTACGCCAGACAGCCCACTAGCCTGCGTTACCG‑TGATTTTGTAGGTAGGATACGGCGTTTAG‑Gcctcc > 2:670398/1‑298 (MQ=11)aTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTGACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGACTTAGTGGGTCGGATAAGGCGTTTAc‑gccgcc > 1:424624/1‑300 (MQ=16) ggcctaacccataaggcgaAATAGGTTGATTTAGCATGATTTTGTAGGGCGGAGAAGGCGTTTACGCCGCAACCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAC‑GCCGCATCCg < 2:737460/286‑1 (MQ=11) aCGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGGG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAC‑GCCGCATCCGACATc > 2:1037494/1‑301 (MQ=25) aCGCCAGACAGCGCAATAGACTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGGATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAC‑GCCGCATCCGACa < 2:268673/299‑1 (MQ=25) ccgaacagcctaaactccTGTTTTCGCGTGATTTTTGAGTTAGATTAAGGGTTGTCCGCCGCGTCCGACCTCACCGCCTGATGGGACGCTTGCCGCGTCTGTTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGGGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAC‑GCCGCATCCGACATCaat < 1:1107360/285‑2 (MQ=11) gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACCTCAACGCCTGCTGCG‑ACGCTTACCGCGTCTTATCCGTCCTAAGCCAAGCCGCGGTATAGCTTGATTTAGCG‑GGATTCTGTGGGTCGGTCAAGGC‑TGTATCGCCGCATCGGAccgcaagcgc > 1:73959/1‑292 (MQ=11) gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTGACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGGGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATCAGGTGTTTCTGATGCACGCGACATAAAGGCATGATGGC‑ACGTCTAACGCGTCTTATAACGACTACGACAGACCGCGCTATAGCCTGATTTAGAG‑TGATTTTGTAGGTCGTAGAGGGGGTTTCT‑GCAGGATTCGACATCacagcg > 2:649226/1‑296 (MQ=11) gcgcAATAGCTTGATTTAGCGTGATTTTGTAGGTCGCAGAAGGCTGTTACGCCGCATCCGACATCAACGCCTGATGGGAGGCTTGACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTTTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAC‑GCCGCATCCGACATCAATGCCTGAt < 2:926152/301‑1 (MQ=11) gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACATCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGCCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTGGTAGGTCGGTTAAGGCGTGTCC‑GCCGCATCCGCAATCAATGCCGGAt > 1:439927/1‑301 (MQ=11) gcgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTAACAGGCCTACGCCACACAGCCGCATAGCCTGTTTTAGCG‑TTCATGTGTCGATCGGATCAGGCGGTTAC‑GCCGCGTCCGACactcatgtctg > 1:362391/1‑289 (MQ=11) gcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATACGGCGTTTAC‑GCCGCATCCGACATCACTTCCTGAttc > 2:454395/1‑299 (MQ=19) gCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCC‑ACGCTCAACGCGTCCTATTAGGCCTACGCTAGACAGCGCCAATGCCCGTTTTAGCG‑CCCCTTCATAGGTCGGATCAGGAGTTTTC‑GCCGCTTCCGCTATCactgcatgtggccacgcc > 1:416713/1‑284 (MQ=11) cggATTTCGCGTGTTTTGCTAGGTCTGATAAGGCTTTTACGCCGCATCCGCAATCAACGCCTGATTCGGCGCTTGACGCGTCTTATCAGTCCTACGCCAGACAGCCCAATAGCCTGATTTAGCGTGATTTTCTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAC‑GCCGCATCCGACATCAATGCCTGATGCGACGCttg < 2:105771/299‑2 (MQ=11) gTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGTGCAATAGCCTCATCTAGAG‑TGATTTTGTCGGTCGGACAAGGCGTTTAC‑GCCCGATCCCGCATCAATGCCCGATGCGACACttgccgctgcttc > 1:11000/1‑290 (MQ=11) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCCATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTGAC‑GCCGCATCCGACATCAATGCCTGCTGCGACGCTTGCCGCGTCTTATc > 2:1118227/1‑300 (MQ=12) tGTCGGTCGGGAGAGGCGTCTACGCCAGAACCGACAGCACCGCCGGATGCGATGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTTATGTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACTCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCGACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAC‑GCCGCATCCGACATCAATGCCTGATAAGACGCGGCAAGCGTCGCATCAGGc < 2:903389/300‑1 (MQ=11) aGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAC‑GCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTat > 2:928604/1‑300 (MQ=14) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑AAGCTTAACGCGTCTTATCAGGACGACGCCAGCCAGAGCAATAGACGGTCACAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTCA‑GCGACATCCGACACTAATGACTGATGCGCCGAttgcagcgagctcggacgatcgtg > 1:92109/1‑279 (MQ=11) ggATTTTGTAGGTCGGATAAGGCGTTTATGCCGCCACCAAAATAAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTCCGCCAGACAGCGCAATAGCCTTATTTAGCG‑TAATTTTGTAGGTAGGATAAGGCTTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTAt < 2:460316/300‑1 (MQ=11) tAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCg > 2:700207/1‑301 (MQ=2) aGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTACCAGGCCTACGCCAGACAGCGCAGTAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACCTCAATGCCTGATGCGACGCTTGCCGCGTCTTAGCAGGCCTATCTTAACCGtt > 2:89296/1‑301 (MQ=255) ttACGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCCGCTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTTCCGCGTCTTCTCCGGCCTATCTTAACCGTTGGTTa > 1:531611/1‑300 (MQ=11) ccGCTTCCTACACCACCCCCTG‑TGCGTACGCTTTCCGCGTCTGACCAGGCCGACGACAGAAAGCGTAATATCCTGATTTAGCG‑GGATTTTGTAGGTAGGATACGGCGTTTAT‑GCCGCATCCGACATCACCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCAACGGTTaagatag < 1:377694/301‑6 (MQ=11) ccGCATCCGATATTAACGCCGTATGCG‑ACGCTTGCCGCGTCTTATCCGGCCTACGCCAGACAGCGAAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAAttttt < 2:165208/301‑1 (MQ=11) cGCATCCGACCGCACTGCCGGAGGCG‑TCGCTTGCGTCGTCTTATCAGGCCTACACCAGCAATCGCAATAGCCTGATTTGACG‑TGATGTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTc < 1:700044/301‑1 (MQ=11) cccccccaCATCAACGCTTGATGCG‑AAGCTTGCCGTGTCTTATCAGGCCTACGCCAGACAGCGGAATAGCCTGATTTTGCT‑TGATTTTGTAGGTCGGATAAGGCGTTTAG‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCa < 2:531733/294‑1 (MQ=11) cGACATCAACGCCTGATGCG‑ACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCATGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACCTCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAACctc > 2:927688/1‑301 (MQ=255) gctgaggagtggggtcttgcgacgacTTAACAGGACGACGCAAGAAGGTGAAATAGCCGGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTCT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGTGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAcc < 1:747834/276‑1 (MQ=14) cGCCTGAGTAG‑ACGCTTGCCGCGTCTTTTCAGGACTACGCCAGCAAGCGCAATAGCCTGATTTAGCG‑TGAGTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGCCATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGACTACGCCAGACAGCGCAATAGCATGATTTAGCATGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAccc < 1:927455/301‑1 (MQ=14) gCCTGATGCG‑ACGCTTGCCGCGTCTTATAAGGCCTACGCCAGACAGCGCAATAGCCTGATCTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATTCGACATTCACGCCTGATGTGACGCTTAACGCGTCTTATCAGGCTTACGCTAGACATCGCAATAGCCTGGTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTG‑‑T‑‑ATGCCGGATCCGACAGAAATGTCCGATGCGTTGCTGGCAGCGTCTTATACGGCCTATCTTACTCGCTGGTTCATTTTTCGAACTTTTcaatcac > 2:766453/1‑295 (MQ=11) gCCTGATGCG‑ACGCGTGCCGCGTCTTATCAGGCCTACGCCATACAGCGCAATATCCTAATTTAGCG‑TGGTTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCATACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCg < 2:416802/301‑1 (MQ=14) cctgataagacgcggcaagcgTCGCATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGCCATCAATGCCTGTGGCGACGCTTGCCGCGTTTTATCCGGCCTATCCTAACCTGTTTTTAATTTTTCAAACTTTTCACTCCCgg > 1:954825/19‑301 (MQ=11) tGATGCG‑ACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCCATCGCCTGATTTAGCGTGATTTTGTAGGTCGGACAATGCGTTGCC‑‑G‑‑CCGTAACCGACATCAATGCCTGACGCGACGATTGCCGTGTCTTATCCGGCCTCTTTCACCCGTCGGTTCATTTTTCCAAACCTTctacccaggtt > 1:684101/1‑291 (MQ=11) tGATGCG‑ACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATTCTGCCTTTCTTAACCGTTGGTTAATTTTTTAAACTATTcaaccccagtt > 2:826312/1‑292 (MQ=11) cgctgccggcttCTTATCGGGCCAACGCCAGACAGCGCAATAGCCTGATTTGGCG‑TGATTTTGTGGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAAccc < 2:11002/290‑1 (MQ=14) ggttgcctgttCTTATCAGGCATACGCCAGACAGCGGAATAGCTTGATTTAGCG‑TGATTTTGAGGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCACCGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCt < 2:706029/291‑1 (MQ=14) gcttgccgctttttctcgggcccgggCCAGGCGGCGCAATGGTCAGATTT‑GCGTTGTTGTTTTAGGTCGTGAAATGCGTTAAC‑GCCGAATCCGACAGAAACGCCTGGTGCGCCGCTTACCGCGTCTTATCAGGCCTACGCCAGCCAGCGCAATAGCCTGATTTAGCGGGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAAcc < 1:826112/274‑1 (MQ=14) gccgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTTTTCACACCCGGTATCAACCCCTTccc > 2:1160867/3‑300 (MQ=255) aaaccgtggaaccAGGACTACGCCGGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGTCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCa < 2:955067/289‑1 (MQ=255) cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTCTCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATCCAGCt > 2:602666/1‑301 (MQ=255) aCGCCAGCCATCGTAATGGCCGGATTTAGCG‑GGATTTTGTAGGTCGGAGAAGGGGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAAcc < 2:610218/300‑1 (MQ=17) aCGCCAGACATCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAAcc < 2:440022/300‑1 (MQ=255) aagacggtgatcgtgcatggtgtAGCG‑TGGTTGTGATGGGCGGATATGGCGTTTAT‑GACGAAGCCGAAATCAACGCCGGAGGGCACGCTTAACGCGTCTGATCAGGCCTACGCCAGACAGAGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGc < 1:536832/279‑1 (MQ=18) gACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTCGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCCGGCCTCTCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCCAACCCtacatcggacgcgcacacgtccgcactccc > 2:396440/1‑272 (MQ=14) gACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAg < 2:424713/301‑1 (MQ=255) gACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCATACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTTTAGGTCGGAGAAGGCGGT‑‑TCCG‑‑CCGCATCCGACATCAATGCCTGATTCGACGCTTGCCGCGTCTTATCCGTCCTATCTTACGCGTTGGATACTTTTTCAACCCATCAACACCGTGTATCAACACCTTCCCTACAGCTCAGGtcccatcactgc > 2:120379/1‑288 (MQ=11) cAATGGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAAcc < 2:107256/287‑1 (MQ=255) cAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATAAAACCCTTCCCTCCAGCTCAGGTTCAAcc > 1:107234/1‑287 (MQ=255) gggctagccG‑TGATTTTTAAGGTCGGATAAGGGTGTTAT‑GCCGCCTCCGACAGCAACGCCGGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGt < 1:1088858/292‑1 (MQ=18) gATTTAGCG‑TGATTTTGTAGGTCTGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGttc < 2:73974/301‑1 (MQ=255) tggcgggtttattcagttgcgATAGGGGGTTTAG‑GCCCCATCCACAATCACAGCCTGTTGTGCAGCTTAACGGGTCTTATCAGGCCTACCCCATACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGttcttc < 1:14566/280‑1 (MQ=18) gCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCCGTGCAGCCCCTTTTGCTTGTTCTtctcc > 1:236062/1‑300 (MQ=255) gtgttattgttgagttCGGATGAGGCGGTTAT‑GCCGCATCCTGCATCAACGCCTGATGCGTCGCTTAACGAGTCTTATCAGGCCTACGCCAGACAGCGCCATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTtctc < 1:928371/285‑1 (MQ=21) atgtaTTTTTTAGGTATGTTAAGGCGTTTTG‑TCCGCAGCCGACCGCTCCTCCTGATACGACGCTAAACAAGTCTGATCAGGCCGACGCCAGACAGCGCAATCGCCCACTTTCGCGTGATTTTGTAGGTCGCAAAACGCATTGAC‑‑A‑‑CCCCATCCGACATCAATGCCTCATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTAGGTTAATTTTTCACACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCCGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGa < 2:367956/297‑1 (MQ=255) aTTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCa > 2:651605/1‑249 (MQ=255) tAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCCGGTTCCACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGCTAAAACcttc > 2:267963/1‑301 (MQ=255) acctgATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCttcttc < 2:1062637/297‑1 (MQ=255) gATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCCCGATAAACCCTTCTTccccc > 2:441325/1‑300 (MQ=255) gATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAACCGGTATCAAACCCTTCCATACAGCCCAGGTTAAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGAGAACACCttcttc > 1:1062369/1‑297 (MQ=255) gatggCGTTTAG‑CCCCCCTCCGACATCAACGCCGGATGCGACTCTTAACGCGTCTTACCAGGCCTACGCCAGACAGCGCAATAGCGTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGTTAAAACCTTCTTCACCGtt < 1:89281/298‑1 (MQ=21) ggCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACAACCGGTATCAACCCCTCCCATACAGCTCCGGTTCAACTAATGCAGCGTCTTTGTCTGTTTCTTCCCGACTAAACCTTCTTACCCGTTTac > 1:708296/1‑300 (MQ=17) gcttttAT‑CCCGAACTCGACATCAACGCCGGATGCAACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAg < 1:602517/298‑1 (MQ=255) gCGTTTAT‑GCCGAATCCGCCATCAACGCCTGATGCACCGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑ACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAg < 2:362471/301‑1 (MQ=255) | ATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCG‑ACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCG‑TGATTTTGTAGGTCGGATAAGGCGTTTAT‑GCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTT‑‑T‑‑A‑‑CCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCACCGTTTAAG > NC_000913/4295974‑4296559 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |