New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2015666	163 (1.170)	6 (0.040)	5/560	18.0	3.6%	coding (787/996 nt)	fliG	flagellar motor switching and energizing component
	?	NC_000913	= 2015736	159 (1.170)					coding (857/996 nt)	fliG	flagellar motor switching and energizing component
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

CCTTTGGCGGCGTGCAGCCAGCCGCGCTGGCGGAGCTGACCGAAGTACTGAATGGCTTGCTCGACGGTCAGAATCTCAAGCGCAGCAAAATGGGCGGCGTGAGAACGGCAGCCGAAATTATCAACCTGATGAAAACTCAGCAGGAAGAAGCCGTTATTACCGCCGTGCGTGAATTCGACGGCGAGCTGGCGCAGAAAATCATCGACGAGATGTTCCTGTTCGAGAATCTGGTGGATGTCGACGATCGCAGCATTCAGCGTCTGTTGCAGGAAGTGGATTCCGAATCGCTGTTGATCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2015367‑2015666 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgcAGAATATCGGCGGCACGCTGCGACATATTGCGCAAGAATTTCTCGCGCAGTGGCTGCTCGGCTCCTTTCAGCGCGATCAACAGCGATTCGGAATCCACTTCCTGCAACAGACGCTGAATGCTGCGATCGTCGACATCCACCAGATTCTCGAACAGGAACATCTCGTCGATGATTTTCTGCGCCAGCTCGCCGTCGAATTCACGCACGGCGGTAATAACGGCTTCTTCCTGCTGAGTTTTCATCAGGTTGATAATTTCGGCTGCCGTTCTCACGCCGCCCATTTTGCTGCGCTTGAGA  <  NC_000913/2015736‑2015440                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCTTTGGCGGCGTGCAGCCAGCCGCGCTGGCGGAGCTGACCGAAGTACTGAATGGCTTGCTCGACGGTCAGAATCTCAAGCGCAGCAAAATGGGCGGCGTGAGAACGGCAGCCGAAATTATCAACCTGATGCAAACTCAGCAGGAAGAAGCCGTTAGTACCGCCGTGCGTGAATTCGCCGGCGAGCTGGCGCAGAAAATCATCGACGAGACGTTCCTGTTCGAGAATCTGGTGTGTGGCGACCATCGCCGCTTCCCGCAGCTGTTGCCGGAAGTGGCTTGCGAAATGCTGTTTATCGCGtt                                                                                                                                                                                                                                                                                                          >  1:1097325/1‑299      GGCGGCGTGCAGCCAGCCGCGCTGGCGGAGCTGACCGAAGTACTGAATGGCTTGCTCGACGGTCAGAATCTCAAGCGCAGCAAAATGGGCGGCGTGAGAACGGCAGCCGAAATTATCAACCTGATGAAAACTCAGCAGGAAGAAGCCGTTATTACCGCCGTGCGTGAATTCGACGGCGAGCTGGCGCAGAACATCATCGACGAGATGTTCCTGTTCGAGAATCTGGTGGCTGTCGACGATCGCAGCATTCAGCGTCTGTTGCAGGAAGTGGATTCCGAATCTCTGTTTATCGCccttaa                                                                                                                                                                                                                                                                                                       >  2:1098572/1‑293                                                              CGACGGTCAGAATCTCAAGCGCAGCAAAATGGGCGGCGTGAGAACGGCAGCCGAAATTATCAACCTGATGAAAACTCAGCAGGAAGAAGCCGTTATTACCGCCGTGCGTGAATTCGACGGCGAGCTGGCGCAGAAAATCATCGACGAGATGTTCCTGTTCGAGAATCTGGTGGATGTCGACGATCGCAGCATTCAGCGTCTGTTGCAGGAAGTGGATTCCGAATCGCTGTTGATCGCGCAGAATATCGGCGGCACGCTGCGACATATTGCGCAAGGATTTCCCGCGCAGTGGGTGCTCGGg                                                                                                                                                                                                                                             >  1:483098/1‑300                                                               GACGGTCAGAATCTCAAGCGCAGCAAAATGGGCGGCGTGAGAACGGCAGCCGAAATTATCAACCTGATGAAAACTCAGCAGGAAGAAGCCGTTATTACCGCCGTGCGTGAATTCGACGGCGAGCTGGCGCAGAAAATCATCGACGAGATGTTCCTGTTCGAGAATCTGGTGGATGTCGACGATCGCAGCATTCAGCGTCTGATGCAGGAAGTGGATTCCGAATCGCTGTTGATCGCGCAGAATATCGGCGGCACGCTGCGACATATTGCGCAAGAATTTCTCGCGCAGTGGCTGCTCGGCT                                                                                                                                                                                                                                            >  2:322743/1‑301                                                                              AAGGGCAGCAAAATGGGCGGCGTGAGAACGGCAGCCGAAATTATCAACCTGATGAAAACTCAGCAGGAAGAAGCCGTTATTACCGCCGTGCGTGAATTCGACGGCGAGCTGGCGCAGAAAATCATCGACGAGATGTTCCTGTTCGAGAATCTGGTGGATGTCGACGATCGCAGCATTCAGCGTCTGTTGCAGGAAGTGGATTCCGAATCGCTGTTGATCGCGCAGAATATCGGCGGCACGCTGCGACATATTGCGCAAGAATTTCTCGCGCAGTGGCTGCTCGGCTCCTTTCAGCGCGATC                                                                                                                                                                                                                             <  2:483248/301‑1                                                                              AAGCGCAGCAAAAGGGGCGGCGGGAGAACGGCAGCCGAAATTATCAACCTGATGAAAACTCCGCAGGAAGAAGCCGTTATTACCGCCGTGCGTGAATTCGACGGCGAGCTGGCGCAGAAAATCATCGACGAGATGTTCCTGTTCGAGAATCTGGTGGATGTCGACGATCGCAGCATTCAGCGTCTGATGCAGGAAGTGGATTCCGAATCGCTGTTGATCGCGCAGAATATCGGCGGCACGCTGCGACATATTGCGCAAGAATTTCTCGCGCAGTGGCTGCTCGGCTCCTTTCAGCGCGATC                                                                                                                                                                                                                             <  1:322649/301‑1                                                                                                                                                     AGCCGTTATTACCGCCGTGCGTGAATTCGACGGCGAGCTGGCGCAGAAAATCATCGACGAGATGTTCCTGTTCGAGAATCTGGTGGATGTCGACGATCGCAGCATTCAGCGTCTGTTGCAGGAAGTGGATTCCGAATCGCTGTTGATCGCGCAGAATATCGGCGGCACGCTGCGACATATTGCGCAAGAATTTCTCGCGCAGTGGCTGCTCGGCTCCTTTCAGCGC                                                                                                                                                                                                                                 <  1:922803/226‑1                                                                                                                                                     AGCCGTTATTACCGCCGTGCGTGAATTCGACGGCGAGCTGGCGCAGAAAATCATCGACGAGATGTTCCTGTTCGAGAATCTGGTGGATGTCGACGATCGCAGCATTCAGCGTCTGTTGCAGGAAGTGGATTCCGAATCGCTGTTGATCGCGCAGAATATCGGCGGCACGCTGCGACATATTGCGCAAGAATTTCTCGCGCAGTGGCTGCTCGGCTCCTTTCAGCGC                                                                                                                                                                                                                                 >  2:923058/1‑226                                                                                                                                                                                                                                                                                              gcggggtcctccaGCAGAATATCGGCGGCCCGCTGCGACATATTGCGCAAGAATTTCTCGCGCAGTGGCTGCTCGGCTCCTTTCAGCGCGATCAACAGCGATTCGGAATCCACTTCCTGCAACAGACGCTGAATGCTGCGATCGTCGACATCCACCAGATTCTCGAACAGGAACATCTCGTCGATGATTTTCTGCGCCAGCTCGCCGTCGAATTCACGCACGGCGGTAATAACGGCTTCTTCCTGCTGAGTTTTCATCAGGTTGATAATTTCGGCTGCCGTTCTCACGCCGCCCATTTTGC             <  1:729060/288‑1                                                                                                                                                                                                                                                                                                         GCGCAGAATATCGGCGGCACGCTGCGACATATTGCGCAAGAATTTCTCGCGCAGTGGCTGCTCGGCTCCTTTCAGCGCGATCAACAGCGATTCGGAATCCACTTCCTGCAACAGACGCTGAATGCTGCGATCGTCGAAATCCACCAGATTCTCGAACAGGAACATCTCGTCGATGATTTTCTGCGCCAGCTCGCCGTCGAATTCACGCACGGCGGTAATAACGCCTTCTTCCTGCTTCTGTTTCATAGGGTTGATTATTTCTGCTGCCGTTCTCACGCCGTCCACTTTGCTGCGATTGAGg  >  2:169666/1‑300                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCTTTGGCGGCGTGCAGCCAGCCGCGCTGGCGGAGCTGACCGAAGTACTGAATGGCTTGCTCGACGGTCAGAATCTCAAGCGCAGCAAAATGGGCGGCGTGAGAACGGCAGCCGAAATTATCAACCTGATGAAAACTCAGCAGGAAGAAGCCGTTATTACCGCCGTGCGTGAATTCGACGGCGAGCTGGCGCAGAAAATCATCGACGAGATGTTCCTGTTCGAGAATCTGGTGGATGTCGACGATCGCAGCATTCAGCGTCTGTTGCAGGAAGTGGATTCCGAATCGCTGTTGATCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2015367‑2015666 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgcAGAATATCGGCGGCACGCTGCGACATATTGCGCAAGAATTTCTCGCGCAGTGGCTGCTCGGCTCCTTTCAGCGCGATCAACAGCGATTCGGAATCCACTTCCTGCAACAGACGCTGAATGCTGCGATCGTCGACATCCACCAGATTCTCGAACAGGAACATCTCGTCGATGATTTTCTGCGCCAGCTCGCCGTCGAATTCACGCACGGCGGTAATAACGGCTTCTTCCTGCTGAGTTTTCATCAGGTTGATAATTTCGGCTGCCGTTCTCACGCCGCCCATTTTGCTGCGCTTGAGA  <  NC_000913/2015736‑2015440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.