New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2777562 =	118 (0.930)	3 (0.020)	3/540	NT	2.6%	coding (110/330 nt)	ypjF	CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system
	?	NC_000913	2777586 =	109 (0.890)					coding (134/330 nt)	ypjF	CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system

TCGGGGGAGGGGAGGTTACAGCGGGAGTCTCTTCGTCTATGAGATTAGCATTTTGCTTTCCTTCAGTCTGCTCTGTATTTAAGCGTTTATTTCACATTAGTTTTTAGCAAGCCGGTAGAGCGCCTTGCTCGCAGAATATCTACTACGGAAATATATGGAGACTGTTGTTGCCACGAAAATCCTCTGTGATCGATACGTACCAGTTCGTACTTTTCCACCAGAAAATTGACTGCATCGGCCAGAGTGATACCAGCATCGATATGTTCCTTAATAACAGTTTCATCACTGAACGGCGTGTCGTTCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2777868‑2777562 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttcagtgATGAAACTGTTATTAAGGAACATATCGATGCTGGTATCACTCTGGCCGATGCAGTCAATTTTCTGGTGGAAAAGTACGAACTGGTACGTATCGATCACAGAGGATTTTCGTGGCAACAACAGTCTCCATATATTTCCGTAGTAGATATTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATG  >  NC_000913/2777586‑2777820                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCGGGGGAGGGGAGGTTACAGCGGGGGTCTCTTCGTCTATGAGATTAGCATTTTGCTTTCCTTCAGTCTGCTCTGTATTTAAGCGTTTATTTCACATTAGTTTTTAGCAAGCCGGTAGAGCGCCTTGCTCGCAGAATATCTACTACGGAAATATATGGAGACTGTTGTTGCCTCGAAAATCCTCTGTGATCGATACGTACCAGTTCGTACTTTTCCACCAGAAAATTGACTGCATCGGCCAGAGTGATACCAGCATCGATATGTTCCTTAATAACAGTTTCATCACTGAACGGCGTGTCGT                                                                                                                                                                                                                                                   <  1:658986/301‑1    ggaGAGGGGAGTTTACAGCGGGAGGTTCTTCGTCTATGAGATTAGCATTTGGCTTTCCTTCGGTCTGCTCTGTAGTTAAGCGTTTATTTCACAGTAGTTTTTAGCAAGCCGGTAGAGCGCCTTGCTCGCAGAATATCTACTACGGAAATATATGGAGACTGTTGTTGCCACGAAAATCCTCTGTGATCGATACGTACCAGTTCGTACTTGTCCACCAGAAAATTGACTGCATCGGCCAGAGTGATACCAGCAGCGATATGTTCCTTAATAACAGTTTCATCACTGAACGGCGTGTCGTTC                                                                                                                                                                                                                                                 <  2:830276/297‑1       GAGGGGAGGTTACAGCGGGAGTCTCTTCGTCTATGAGATTAGCATTTTGCTTTCCTTCAGTCTGCTCTGTATTTAAGCGTTTATTTCACATTAGTTTTTAGCAAGCCGGTAGAGCGCCTTGCTCGCAGAATATCTACTACGGAAATATATGGAGACTGTTGTTGCCACGAAAATCCTCTGTGATCGATACGTACCAGTTCGTACTTTTCCACCAGAAAATTGACTGCATCGGCCAGAGTGATACCAGCATCGATATGTTCCTTAATAACAGTTTCATCCCTGAACGGCGTGTCGTTCAGTG                                                                                                                                                                                                                                             >  2:1055438/1‑301                                                                                                                                                                                                                                             GGCCAGAGTGATACCAGCATCGATATGTTCCTTAATAACAGTTTCATCACTGAACGACACGCCGTTCAGTGATGAAACTGTTATTAAGGAACATATCGATGCTGGTATCACTCTGGCCGATGCAGTCAATTTTCTGGTGGAAAAGTACGAACTGGTACGTATCGATCACAGAGGATTTTCGTGGCAACAACAGTCTCCATATATTTCCGTAGTAGATATTC                                                                                       >  1:335971/1‑221                                                                                                                                                                                                                                             GGCCAGAGTGATACCAGCATCGATATGTTCCTTAATAACAGTTTCATCACTGAACGACACGCCGTTCAGTGATGAAACTGTTATTAAGGAACATATCGATGCTGGTATCACTCTGGCCGATGCAGTCAATTTTCTGGTGGAAAAGTACGAACTGGTACGTATCGATCACAGAGGATTTTCGTGGCAACAACAGTCTCCATATATTTCCGTAGTAGATATTC                                                                                       <  2:335962/221‑1                                                                                                                                                                                                                                                  GAGTGATACCAGCATCGATATGTTCCTTAATAACAGTTTCATCACTGAACGACACGCCGTTCAGTGATGAAACTGTTATTAAGGAACATATCGATGCTGGTATCACTCTGGCCGATGCAGTCAATTTTCTGGTGGAAAAGTACGAACTGGTACGTATCGATCACAGAGGATTTTCGTGGCAACAACAGTCTCCATATATTTCCGTAGTAGATATTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAAACTGAAGGAAAGCAAAATa  >  1:989234/1‑300                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCGGGGGAGGGGAGGTTACAGCGGGAGTCTCTTCGTCTATGAGATTAGCATTTTGCTTTCCTTCAGTCTGCTCTGTATTTAAGCGTTTATTTCACATTAGTTTTTAGCAAGCCGGTAGAGCGCCTTGCTCGCAGAATATCTACTACGGAAATATATGGAGACTGTTGTTGCCACGAAAATCCTCTGTGATCGATACGTACCAGTTCGTACTTTTCCACCAGAAAATTGACTGCATCGGCCAGAGTGATACCAGCATCGATATGTTCCTTAATAACAGTTTCATCACTGAACGGCGTGTCGTTCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2777868‑2777562 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttcagtgATGAAACTGTTATTAAGGAACATATCGATGCTGGTATCACTCTGGCCGATGCAGTCAATTTTCTGGTGGAAAAGTACGAACTGGTACGTATCGATCACAGAGGATTTTCGTGGCAACAACAGTCTCCATATATTTCCGTAGTAGATATTCTGCGAGCAAGGCGCTCTACCGGCTTGCTAAAAACTAATGTGAAATAAACGCTTAAATACAGAGCAGACTGAAGGAAAGCAAAATG  >  NC_000913/2777586‑2777820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.