Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0009133,425,0070A→C100.0% 1.0 4noncoding (1777/2904 nt)rrlD23S ribosomal RNA of rrnD operon
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (2/0):  ref base (2/0):  total (4/0)

GGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCG‑CTTGC‑GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCACTTTCGTGTTTGCACAGTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTATCTTCGACTGATTTCAGCTCCACGAGCAAGTCGCTTCACCTACATATCAGCGTGCCTTCTCCCGAAGTTACGGCACCATTTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTGTGTCGGTTTGGGGTACGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT  >  NC_000913/3424784‑3425252
                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                     
ggTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCCTTGCGGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCACTTTCGTGTTTGGACAGGGCTGTGTTTTTAATAACCAGTTTCAGCCCGCTGGTAGCTTCGACTGATTTCAGTCCCGCCAGCTAGTccattcccccaccttccctcgtgc                                                                                                                                                                             >  2:183715/1‑277 (MQ=11)
ggTAGAGACAGCATGGCCATCATTACGCCATTCGTGCAGGTAGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACCACCGCCATTTACCGGGGCTTCGATCAAGAGCTTCG‑CTTTC‑GCTGACCCCATCAATTGAACTTACGGCACCGGGCAGGCGTCCCACCGACAACTTCCCCTTTAGTGTTTGAAAAGTGCTATGTTTTTAATAACCAGTTGCAGCCACGTGTCATCTTCGCATGACTTCATACACACGACCAAGtacattaacattcatttcacagtgca                                                                                                                                                                            >  2:853819/1‑274 (MQ=2)
                   tcatTACGCCATTCGGGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACAGGGGCTTCGCTCAAGAGCTTCG‑CTTGC‑GCTAACACCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCGTCCACGTCCCCTTTCGTGTTTGCACAGTGCAGTGTGTTTCATAAACAGTTGCAGCAAGGTGGTCACTTCAACTGATTTCAGCTCCACGAACACGTCGCTTAACCTACCTCTCacagctccttcctccgacatgccgacac                                                                                                                                                        >  2:829812/1‑273 (MQ=1)
                                                                                                                                                                          gCGTCACACCGTATACGTCCACTTTAGTGTTTGCACAGTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTATCTTCGACTGGTTTAAGCTCCACGAGCGAGTCGCTTCACCTACATATCAGCGTGCCTTCTCACGAAGTTACGGCACCCTTTTGGCTAGTTCCTTCCCCCGAGTTCTCGCACGCGCCTTTCGCGTCCCTCCCTGACCACCTGTTGCGGGTGGGGGGACGGTTTGCTGTTCGCTGAGGCCTATGTGCATGTCCGGGACGCAGTGCagtggaggttttagcaacatagt  >  2:57128/1‑279 (MQ=0)
                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                     
GGTGGAGACAGCCTGGCCATCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCG‑CTTGC‑GCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCACTTTCGTGTTTGCACAGTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTATCTTCGACTGATTTCAGCTCCACGAGCAAGTCGCTTCACCTACATATCAGCGTGCCTTCTCCCGAAGTTACGGCACCATTTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTGTGTCGGTTTGGGGTACGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGT  >  NC_000913/3424784‑3425252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.