New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1207805	16 (0.120)	51 (0.420)	44/548	3.1	79.0%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	= 1209602	12 (0.100)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.

ATAGACACGAAAACCGCGCAGAAGGATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCA‑AAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACGGGGGGATATACAACCACTTCGTTTTTATTACGGTGCGCAGCTCAAACGGGTAG  >  NC_000913/1207510‑1208096                                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                                     ccggtctcGAAAACCGGGCAGAAGGATAAGTGGGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCa                                                                                                                                                                                                                                                                                                  <  1:235927/293‑1 (MQ=255)      aacGAAAACCGGGCAGAAGGAAAAGTGGGCGGCGGGTAAGAAGGGGTTTACCCGTGGTAACCCCCAGACCGGCACGCATGCCACCGAGCTGGATGATGACTACTTTGAAATGTTGCAGGAGGAACTTTGGAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAACCCGTATGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGAA‑AAACTc                                                                                                                                                                                                                                                                                           <  2:862981/300‑1 (MQ=255)       acGAAAACCGCGCAGAATGATAAGTTCGGCGCGGGTAAGAACGGTGTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAggctctgcattac                                                                                                                                                                                                                                                                                           <  2:67097/301‑12 (MQ=255)        cGAAAACCGCGCAGAAGGATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCCCGAAAACCTTGGTTTGGGAGAAGGAGCa                                                                                                                                                                                                                                                                                                  >  2:235975/1‑293 (MQ=255)         gAAAACCGCGCAGAAGGATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGACggctcttcattacct                                                                                                                                                                                                                                                                                         >  2:789204/1‑288 (MQ=255)                gcgcAGAAGGATGAGTTCGGCGCGGGTAAGAACGGTGTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTAGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAggctctgcattacctgttggtg                                                                                                                                                                                                                                                                                  <  2:29935/301‑21 (MQ=255)                  gcAGAAGGATAAGTTCGGCCAGGGTAAAAACGGGTTTGCCCGGGGTCAACCCCCGACCGGCACGCCTGCCACCGAGCTGGATGATGACTACTTGGACAGGTTGCAGGAGGAACGTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTGACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAggctctgcattacctgttggtgtc                                                                                                                                                                                                                                                                                <  1:116011/301‑23 (MQ=17)                    aGAAGGCTAAGTTCGGGACGGGTAAGAGCGGTTGTGCCCGGGGTAACCCCCACACCGGCACGCCTGCCACCGATGTGGATGATGACTACTTTGAAAGGTGGCAGGAGGAACGTTGCAGCGGGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCGGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAggctctgcattacctgttggtgtccc                                                                                                                                                                                                                                                                              <  1:273304/301‑25 (MQ=17)                                  ggCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCA‑AAACTCAATGCAGCAACGGCTACATTAGGAc                                                                                                                                                                                                                                                                  <  2:673353/298‑1 (MQ=255)                                  ggCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCCCTCGAAAACCTTGGTTTGGGAGAAGGAGCA‑AAACTCAATGCAGCAAAGGCTACATTAGGaa                                                                                                                                                                                                                                                                  >  1:673160/1‑297 (MQ=255)                                                                     ccAGACCCACACTCCGGCCACCCATCGGGATGATGACTACTGTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCA‑AAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTggtggt                                                                                                                                                                                                                            <  2:720499/301‑1 (MQ=255)                                                                                                              ttcaCATGTTGCAGCAGGAACTTTGCAGCGGGGTGGAGGCCGCCGGTGCCAGCCTGGAGAAGGGTCTGCACGACCAGTTACTTACCGCACTTCGCGCTCTGCTGTTAAGCCGAAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAGACCTTGGTTTGGGAGAAGGAGCA‑AAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCg                                                                                                                                                                                    <  2:1142114/297‑1 (MQ=255)                                                                                                                                                     cATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCA‑AAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATTGGCCTCTGGGGGGGATGGAAATCCAGgtgt                                                                                                                                            >  1:485295/1‑301 (MQ=255)                                                                                                                                                               cAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGCAGGAGCA‑AAACTCAATGCAACAAAGGCTACATTAGGACGCACCGGTATCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGGAATCATTCAGTGGGGGGGGAATGCCGCGAAAGTATCGGCCCCTGGGGGGGAGGGAAAGACAGTTGTGTTCCCggcg                                                                                                                                  >  1:599094/1‑299 (MQ=37)                                                                                                                                                                                                                                            gggATAACAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCA‑AAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACggg                                                     <  2:485425/299‑1 (MQ=255)                                                                                                                                                                                                                                                                    atgtcttcattttcataaaCGTTGGTTTGGGAGAAGGAGCA‑AAACTCAATGCAGCAACGGCGACAGTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACa                                                                                       <  2:291475/227‑1 (MQ=255)                                                                                                                                                                                                                                                                          tcattttcataaaCGTTGGTTTGGGAGAAGGAGCA‑AAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCGGTGTTTCCGTGGTTGCAAATTATGAACATGTCAGCGCACCTATCATTGCAGTGGCAACGGGGGGATATAGAACCAACCAGTTGTTATTAcc                       >  1:42341/11‑300 (MQ=255)                                                                                                                                                                                                                                                                               tgcataaaGCTTGGTTTGGG‑GAAAGAGGACAAATTCACAGGAGGACCGGATACATGAGTACGCACGGGTTTCAAAGCTTTACCAGGTATGAGTGGTGTGATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAGCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACGGGGGGATATACAACCACTTCGTTTTTATTACGGTgc                   <  1:1057899/295‑1 (MQ=255)                                                                                                                                                                                                                                                                               ctcGAAAACCTTGGTTTGGGAGAAGGAGCA‑AAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCAc                                                                           >  2:212084/1‑244 (MQ=255)                                                                                                                                                                                                                                                                                  ataaaCGTTGGTTTGGGAGAAGGAGCA‑AAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACGGGGGGATATACAACCACTTAGTTTTTATTACGGTacgc                 >  2:19996/3‑299 (MQ=255)                                                                                                                                                                                                                                                                                                   agaAGGAGCA‑AAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGATTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTGGTATTCCCGGTTGCGTTTAATAGTGCGTGTGTTGCGGTTGTTGCAAATGTTGACAAGGTCAGCGCACCTAGCAATGCAGTGGCAACGTGGGGAGGTGTACCCACTTCGtttgaggtactgtgtgattctacaacgggtag  >  1:762763/1‑268 (MQ=255)                                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                                     ATAGACACGAAAACCGCGCAGAAGGATAAGTTCGGCGCGGGTAAGAACGGTTTTACCCGTGGTAACCCCCAGACCGGCACGCCTGCCACCGATCTGGATGATGACTACTTTGACATGTTGCAGGAGGAACTTTGCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCA‑AAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCATCTGCCTCTGGGGGGGATGGAAATACAGTTGTATTCCCGGTTGCGTTTAATAATGCCTGTGTTGCCGTTGTTGCAAATTATGACAATGTCAGCGCACCTATCAATGCAGTGGCAACGGGGGGATATACAACCACTTCGTTTTTATTACGGTGCGCAGCTCAAACGGGTAG  >  NC_000913/1207510‑1208096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.