Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,296,191 | 0 | A | C | 31.1% | 38.0 / 29.6 | 64 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
Reads supporting (aligned to +/- strand): ref base A (25/17); new base C (11/8); total (38/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.27e-01 |
GATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTA‑‑CCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAAC > NC_000913/4295892‑4296481 | ggattAGCGGGATTTTGTAGGTCGGATCAGGCGTTTATGCCGCATCCGACATCAACGCCGTAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAAGAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATAAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAAc < 1:1136893/298‑1 (MQ=255) aaTTTTGCGTAATTTTGTAGGTCTGATAAGGCGTTTAAGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAAc < 2:331665/300‑1 (MQ=21) gCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGGTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGAAATCACCCCCTGATCGCG‑CGCTTAAagccttt > 2:841828/1‑297 (MQ=255) ttttGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCATTAGCCTGATTTAGCGTGATTTTGTATGTCGGATAATGCGTTAATGCCGCATCCGACATTAACGCCAGAG‑GCGACGCTTACCGCGTCttgac > 1:90873/1‑296 (MQ=255) tggactgatggATAACGCGTATATGCCTCATGCTACATGCA‑GCCTGGTAGCGAGCCTTGTCGGGTCTTACCCTGACTCAGCCAGCCAGCTCAATTGCCTGTGTTAGCGTGCTTATGTAGGTCTGATAAG‑GCGTTTACGCCGCCTCCGACATCAACG‑CCTGTTGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑AAGACGCGTTAAGCGTCGCAT‑CAgg < 1:888908/291‑1 (MQ=2) ggTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGACGCGTCTCATCAGACCTACGCCAGACAACGCAATAGACCGATCTAGCGGTATTTTGTAGGTCGGATAAGGGGGTGATCCCGACTCAGCCCTCAACGCATGAT‑GCGGCACTGAGCGCGTCTTAT‑TAGGCCTAcc > 1:801710/1‑300 (MQ=11) gATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGATGCTTAACGCGTCTTAT‑CACGCCTaacatacg > 2:708127/1‑294 (MQ=25) tAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCCGGCCTACGCCCGCCAGCGCAATAGCATACTTTAGCGTTATTTTGTAGGTCGGAAAAGGCTGTTCTGCCACATCCGACATCAACGCCTGAT‑TCGACTGTTCACGCGTCTTTT‑CAGGCCTACGCCCGAcc > 1:1069723/1‑300 (MQ=11) aaGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGCTACGGCGTTTATGCCGCATCCGACATCAACGCCTGCT‑GCGCCCCTTAACGCGTCTTAT‑CAGGCCTCCGCCAGAccg > 2:134030/1‑299 (MQ=255) tGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGCCATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATGTTGTAGGTCGGATAAGGCGGTTATGCCGACTCCGAACTAAACGACTGAT‑GCGACGCTTCAAGCTTCTTTT‑CAGGCCTACGCCTGCCAGCTCAATAGcc > 2:796160/1‑301 (MQ=11) cGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGCCCGCGCATTAGCCTGATTTCTCTTGATTTTTTAGGTCGAATAAGTCGTTTATGCGGCTTCCGGATTAAACGCCTGAT‑TCGACGAGTGACGCGCTTAAT‑CCGGCATCCGCATGACAgcgctagagattctcatcac > 1:381738/1‑285 (MQ=11) ctggcgtaggCCTGAT‑AAGACGCGGCAAGCGTCGCATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTATGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTACCGTTATTTTGTAGGTCGAATAAGGCGTTTACGCCGAATCCGACATCCAAGCCGGAG‑GCACCGCCTTTCGAG‑CTTGTACAGCCCTACGCCAGACAGGTCAAtcgacgtactcttac > 1:609483/10‑287 (MQ=11) cATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGCTGCGATGCTTGCCGCGTCTTATCAGCCCTACGCCACACAGCGCAATAGCCTGATCTAGCGTGCTTTTGTAGGTCGTATAAGACGTTGACGCCGCTTCCGACATACACGCCTACT‑GCACCGCTTAACTCCTGTCAT‑CAGGCCTACGTCATACAgcgtcacatcctcagtacggctg > 1:275548/1‑281 (MQ=11) tCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGCTTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGTTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGCT‑GCGACGCTTAACGCGTCTTAT‑CAGCCCTACGCCAGCCAGCGAAATAGCCTGATTTAgtggaat > 2:1122267/1‑295 (MQ=255) cAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGCCACCGCAATAGGCTGATTTCGCGTGGtt > 2:853487/1‑301 (MQ=21) aaCGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAttt > 2:969710/1‑301 (MQ=34) gtgagtcTTAACGCGTCTGTTCAGGCCTACGACAGCCAGCGCAATAGCCTGATTTAGCGGGTTTTTGTAGGTCGGATAAG‑GCTTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCg < 2:844918/294‑1 (MQ=255) gCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAATG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGCAAGCGCAACAGCCTGTCTTAGCGTGACTTTGTAGGTCGGATAAGGCGTTTATGCCTCATCCTACATCAGAGCTTGAT‑GCGCGGCTTGACGCGGCTTAT‑CAGGCCTGAGCTCGGCAGCGCAATAGCCTCAtatcccgcgactctgtagattgg > 1:185127/1‑279 (MQ=11) gACGATTTACGCGGCTATGCAGGCTTAGGCCAGACAGCGAAATAGCCTAATTTAGCGTGATTTTGTCGGTCGGATAAG‑GCGTTTACGCCGCATCAGACATCAACG‑CCGGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAt < 2:165490/301‑1 (MQ=11) acgacgaacgctgcgtATCAGTCCTCAGCCAGACAGCGCAATAGCCTAATTTAGCGTAACTTTTTAGGGCGGATAGG‑GCGTTTCCGCCGCCTCCGACATCGACG‑GCTGATGCGACGCTTTCCGTGTCTTATCAGGCCTACGCCAGCCAGCGCAATAGCCTTATTTAGCTTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATa < 2:1087391/286‑1 (MQ=11) cGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCTGATa > 2:366216/1‑300 (MQ=25) gatgcggggtgttctCAGGCCAACACCCGACAGCGCCACAGCCCGATTTAGAGGTCTTTTGTAGCTCGGAATAG‑GCGGGTACGCGGCATCCGCCATCAGCG‑CCCGATGCAACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGTTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAgg < 2:145023/287‑1 (MQ=11) gatccttCTTAGCAGGCCTCCGCCGGATAGCTCATTTGGTTGATTTTGCGTGATTTTTTAGGTCGGTTAGA‑GCCGTTACGCGCCAGCCTTCCT‑AACGCCCTGTTGCGACGCTTTCCGCGTCTTATCAGGCCTACGCCAGACCGCGGAATGGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCCGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCg < 1:738325/294‑1 (MQ=11) aaCGCGTCTTATCAGGACTACACCCTACAGCGCAATAGCCTGTGTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCAGCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCg < 2:801931/300‑1 (MQ=255) aCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGACTGATTTAGCGTGATTTTGTCGGTCGGCAAAggag > 2:738534/1‑297 (MQ=18) cgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGACTGTT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTCCGCCCAACAGCGCAATATCCTGCTTTCGCGTGAtttttgagtgagtatcaggctttt > 2:411296/1‑281 (MQ=11) cgcgGCTTATCAGGCCTAGTCCAGACAGCGCAATAGCCTGATTTAGCTTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGttt < 2:426176/301‑1 (MQ=17) gTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATACCCTGATTTAGCGTGATTTTGTAGGTCGGGTAAGGCGTTTacg > 2:1171096/1‑299 (MQ=17) cAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCTACGCTTAACGCGTCTTAC‑CAGGCCTACCACAGACAGCGCAATAGCCGTATTACGCGTCGTTTTGTTGGTCGGACACGGCGtttcagccccctc > 1:527873/1‑291 (MQ=11) gtgcaacgccaaaagacgaactAGCCTGATTTAGCGGTGTTTGAAAGGGCGGATAAG‑GCCTTTACGCGGCACCGCACATCAACG‑CCTGATGCGACACTTGCCGCGTCTTATCAGGCCTAGGCCAGACAGCGCAATAGCCTAATTTAGCGTGATGTTGTAGCTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCg < 2:275604/280‑1 (MQ=11) cctgcataccggtggagaccaggatgttgggTGATTTTGTGGGTCGGATAAG‑GCCTTTACGCCGAATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCGTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATc < 2:609659/271‑1 (MQ=11) gCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGCCAGCGCAATAGTATGATTTCGCGTGATTTTGTAGGTCGGATACGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GTGACGCTTAACGCGGCTTAT‑TACGCCTACTCCCACCATCGCAAAAGCACGATTTAGCGTCATGTCGTTGGTCGGCTAACGCGTTTAcgccgcttgctgcaccac > 1:156710/1‑289 (MQ=11) ccAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCTCATCCGACACCAACGCCTGCT‑GCGCCGCTTACCGCGTCTTAT‑CAGCCCTACGCCCGCCCGCGCAAGAGCCTGCTCTAGCGTCATTTTGTCGCTCGGaacgccctgttagacctcatcatccacccac > 1:561287/1‑271 (MQ=11) gACAGCTAAATGGCCTTATTTGGCGTTATTTTGTGGGTCTGATAAG‑TCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTTTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGcc < 2:1101919/301‑1 (MQ=11) aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCCCAACACCCTGAATTCGCGGTAGTTTTTGGGCCGAATAATGCGTTTCTGCCGCATCTGACATCaatcccc > 1:1049734/1‑296 (MQ=11) cTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCttg > 2:554313/1‑300 (MQ=18) tAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATCGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGACGCGt > 2:224483/1‑301 (MQ=21) agggtggttgtggaggcgcgacaaG‑GCGTTTCCACCGCATCCGCAATCAGCG‑CCTGATGAGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTc < 2:1107416/279‑1 (MQ=11) gTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTCGGTCGGATAAGGCGTTTCCGCCGCATCCGACATCCATGCCTGATGCGACGCTTGCcgcggcgtt > 2:592463/1‑296 (MQ=255) cgttgatgTCGGATGCG‑GCATAAACGCCTTATCCGACATCAACG‑CCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGTCGTTTACGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTGCCGCGTCTTAC‑CAGGCCTACGCCAGACCGCGCAATAGCCTGATTTCGCTTGATTTTGTACGTCGGATCCGGAGTTTAGTCCGGATACGATATCCACAACTGAGGCGTCACTGATcgcggcgtactcgg > 1:942925/8‑291 (MQ=11) ttGTAGGTGGGATAAG‑GTGTTTGTGCCGCATCAAACAGCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCACACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTAGGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAgg < 1:773231/300‑1 (MQ=11) ttGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTCGGTCGGATAAGGCGTTTACGCCGCCTCCTACAGCAATGCCTGTCGCGACCCTTGCCGCGTCTTTTCAGGc > 1:696258/1‑301 (MQ=11) ttGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATACGGCGTTTACGCAGCATCCGACATCAATGCCTGATCCGACGCTTGCCGCGGCTTATCCGGc > 1:707249/1‑301 (MQ=255) tGTAAGTCGGAGAAGTGCG‑TTACGTCGCAGCCGACATCAGTG‑CACGGTGGGACTCGTGCCTGGTCTTATTAGGCTTACGCCAGACAGCGCAATAGGCTGTTTTAGCGTTATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGGCATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 1:1170781/300‑1 (MQ=1) gTAGGGCGGAAAAG‑GCTGTTACGCCGCATCCGACATCAACG‑CCGGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc < 2:1002330/300‑1 (MQ=255) aG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACTCCACACAGCGCAATAGCTTGCTTTAGCGTGTTTTTGTAGGTCGGCTAAGGCTTTTACGCCTCCACCGACATAACCGCCTGACGCGACGCTTGCCGCGTCTTAACAGGcccatcttcaccgtt > 1:935883/1‑288 (MQ=11) ggCGTTTACGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTGCCGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTTCCGCGTCTTATCAGGCCTATCTTAACCGTTg > 2:1130557/1‑301 (MQ=2) cctcgtcggccctctctcgagctCAACGCCTAGT‑GCGCCGTTTGCCCCGTCTTGT‑CAGGCGTACGCCAGACACCGCAATCGCCTGCTTTAGCGTGATTTTGTAGGTCGGATAGTGCGTTTATGCCGCATCCGACATCAACGCCTGAGGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTg < 1:364432/279‑1 (MQ=11) gcgtgcacgCCGCAGCCGACCTCCATGCCCTAT‑GCGACGCTCACCGCGTTTCAC‑CCGGACTATCTCAGCCAGCGAAATAGCCTGAGTTAGCGTGATTTTGTAGGGCGGATAAGGCGTTTATGCCGCATCCTACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCGACGCCAGACAGCGCAATAGCCTGATTTCGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTgg < 2:736508/293‑1 (MQ=11) gCGTTTATGCCCCATCCGACATCACCGCCTGAT‑GCGACGGTTGCCGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTgg < 2:762810/301‑1 (MQ=255) gTTTACGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTGCCGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTTATGCGACGCTTCCCGCGACTTAACAGGACTATCTTAACAGTTGGtt > 2:1059977/1‑301 (MQ=11) gTTTACGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTGCCGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGtt > 2:261809/1‑301 (MQ=12) gcgctcccacacaaccGCCTGAT‑GCGCCCCTTGCCGCGTCTTAT‑CAGGCCTACGACAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTc < 2:140722/286‑1 (MQ=11) cccGACATCCACGCCTGAT‑GCGACGCTTGCCTCGTCTTAT‑CAGGCCTACGCCAGACAGCGAAATAGCCTTATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAAc < 2:936132/300‑1 (MQ=255) ccGACATCAACGCCTGAT‑GCGACGCTTGCCGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGCCCGCGCAATAGCCTGCTTTAGCGATATTTTTTAGGTCGGACAAGGCGTTTACCCCGCATCCGACATCAATGACCGGTGCGCCGCCTGCCGATTTTTATAATGCCCACCTTAACAGTCTCGTAATTTTTcgcgtc > 1:140694/1‑296 (MQ=11) cgagtccaccgccgact‑GCGTCGCTTGCCTCGTCTTAT‑CAGGCCTACGCCAGACAGCTCAATAGCCTTTTTTAGCGTTATTTTTTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAActc < 1:853254/285‑1 (MQ=11) cgaattCAACGCCTGAT‑GCGTCGCGTTCCGCTTCTTAG‑CAGGCCTACGCCGGACAGGCCAATATGCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCGTCCGACAGCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAActc < 2:366715/296‑1 (MQ=14) ggcgtaggCCTGAT‑AAGACGCGGCAAGCGTCGCAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAACCGACCTCAATGCCTGATGCGACGCTTGCCGCGTCGTATCAGGCCTATCTTAACCGTGTGTTAATTTTTCAAACttttt > 2:884699/8‑300 (MQ=11) cAACGCCTGAT‑GCGACGCTTGCCGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGCCATACATGCCTGATGCGACGCTTGCCGCGTCGTCTCAGCCCTACCTTAACCGTTGGTTAATTTTTCAAACTCTTcaa > 1:391255/1‑299 (MQ=11) cAACGCCTGAT‑GCGACGCTTGCCGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTgggatcggacgagcacacgtctgg > 2:364514/1‑279 (MQ=11) cTGAT‑GCGACGCTTGCCGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAATCTCTTCacac > 2:131199/1‑296 (MQ=255) gtt‑GCCACGCTTGTCGCGTCTTAT‑AAGGCCTACGCCAGAGAGCGCTATCGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACTCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTa < 1:366134/298‑1 (MQ=14) gCGACGCTTGCCGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACACGGTATCa > 2:1093843/1‑300 (MQ=255) aaCGCTTGCCGCGGCTTAG‑CAGGCCTACGCCAGACAGCGCAATCTCCTGGTTTAGCGTGATGTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACAGCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACGGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAAc < 2:185169/300‑1 (MQ=14) | GATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAG‑GCGTTTACGCCGCATCCGACATCAACG‑CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGAT‑GCGACGCTTAACGCGTCTTAT‑CAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTA‑‑CCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAAC > NC_000913/4295892‑4296481 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |