breseq  version 0.27.1  revision 87c22d663cc3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,296,268	0	T	C	31.7%	55.7 / 23.4	42	intergenic (+474/+168)	gltP/yjcO	glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
*	NC_000913	526,792	0	A	C	28.2%	116.4 / 44.2	71	S1178R (AGC→CGC)	rhsD	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
*	NC_000913	526,796	0	C	G	25.8%	147.8 / 43.7	67	A1179G (GCG→GGG)	rhsD	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
*	NC_000913	526,800	0	A	G	20.3%	136.7 / 25.7	64	E1180E (GAA→GAG)	rhsD	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1096961 =	53 (0.810)	21 (0.440)	6/440	5.8	31.4%	intergenic (+132/+604)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	NC_000913	= 1097503	53 (1.110)					intergenic (+674/+62)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
*	?	NC_000913	= 1207805	72 (1.100)	5 (0.080)	5/568	7.8	7.5%	coding (305/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	NC_000913	= 1209602	55 (0.890)					pseudogene (18/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related