New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4434563 =	386 (0.930)	3 (0.010)	3/310	20.5	0.8%	noncoding (68/111 nt)	REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913	4434590 =	401 (1.020)					noncoding (95/111 nt)	REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences
Rejected: Position hash score below cutoff.

GGGGAAATTCACCCGGCGGCAGATAACAACTGGCGTTTAGCACCGATAGCTGGCGATAAGAAACTGGATATCCGTTTCGAAACCTCTCCGTCAGATAAAGCCGCAGCGTTTATTAAAGAGAAAGGGCAGTATCCGATGAATAAAGTCGCGACCGATGATATCGGGTTTGCGATTTATCAGGTGGATTTGAGTAAGTAAAACACTTCTTTTTCGGCCTATAAATCATCAACCGCATCCGGCATTTATTGGCGGATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4434819‑4434563 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggatgcgGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGAC  >  NC_000913/4434590‑4434832                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGGGAAATTCACCCGGCGGCAGATAACAACTGGCGTTTAGCACCGATAGCTGGCGATAAGAAACTGGATATCCGTTTCGAAACCTCTCCGTCAGATAAAGCCGCAGCGTTTATTAAAGAGAAAGGGCAGTATCCGATGAATAAAGTCGCGACCGATGATATCGGGTTTGCGATTTATCAGGTGGATTTGAGTAAGTAAAACACTTCTTTTTCGGCCTATAAATCATCAACCGCATCCGGCATTTATTGGCG                                                                                                                                                                                                                                                           >  1:1316910/1‑251                                                          AAGAAACTGGATATCCGTTTCGAAACCTCTCCGTCAGATAAAGCCGCAGCGTTTATTAAAGAGAAAGGGCAGTATCCGATGAATAAAGTCGCGACCGATGATATCGGGTTTGCGATTTATCAGGTGGATTTGAGTAAGTAAAACACTTCTTTTTCGGCCTATAAATCATCAACCGCATCCGGCATTTATTGGCGGATtc                                                                                                                                                                                                                                                      >  1:5690003/1‑197                                                          AAGAAACTGGATATCCGTTTCGAAACCTCTCCGTCAGATAAAGCCGCAGCGTTTATTAAAGAGAAAGGGCAGTATCCGATGAATAAAGTCGCGACCGATGATATCGGGTTTGCGATTTATCAGGTGGATTTGAGTAAGTAAAACACTTCTTTTTCGGCCTATAAATCATCAACCGCATCCGGCATTTATTGGCGGATGC                                                                                                                                                                                                                                                      <  2:5689061/199‑1                                                                   GATATCCGTTTCGAAACCTCTCCGTCAGATAAAGCCGCAGCGTTTATTAAAGAGAAAGGGCAGTATCCGATGAATAAAGTCGCGACCGATGATATCGGGTTTGCGATTTATCAGGTGGATTTGAGTAAGTAAAACACTTCTTTTTCGGCCTATAAATCATCAACCGCATCCGGCATTTATTGGCGGATGC                                                                                                                                                                                                                                                      <  2:978943/190‑1                                                                   GATATCCGTTTCGAAACCTCTCCGTCAGATAAAGCCGCAGCGTTTATTAAAGAGAAAGGGCAGTATCCGATGAATAAAGTCGCGACCGATGATATCGGGTTTGCGATTTATCAGGTGGATTTGAGTAAGTAAAACACTTCTTTTTCGGCCTATAAATCATCAACCGCATCCGGCATTTATTGGCG                                                                                                                                                                                                                                                           <  1:1130523/185‑1                                                                   GATATCCGTTTCGAAACCTCTCCGTCAGATAAAGCCGCAGCGTTTATTAAAGAGAAAGGGCAGTATCCGATGAATAAAGTCGCGACCGATGATATCGGGTTTGCGATTTATCAGGTGGATTTGAGTAAGTAAAACACTTCTTTTTCGGCCTATAAATCATCAACCGCATCCGGCATTTATTGGCG                                                                                                                                                                                                                                                           <  1:2350853/185‑1                                                                   GATATCCGTTTCGAAACCTCTCCGTCAGATAAAGCCGCAGCGTTTATTAAAGAGAAAGGGCAGTATCCGATGAATAAAGTCGCGACCGATGATATCGGGTTTGCGATTTATCAGGTGGATTTGAGTAAGTAAAACACTTCTTTTTCGGCCTATAAATCATCAACCGCATCCGGCATTTATTGGC                                                                                                                                                                                                                                                            <  2:1226205/184‑1                                                                          GTTTCGAAACCTCTCCGTCAGATAAAGCCGCAGCGTTTATTAAAGAGAAAGGGCAGTATCCGATGAATAAAGTCGCGACCGATGATATCGGGTTTGCGATTTATCAGGTGGATTTGAGTAAGTAAAACACTTCTTTTTCGGCCTATAAATCATCAACCGCATCCGGCATTTATTGGCGGATGC                                                                                                                                                                                                                                                      <  2:4904108/183‑1                                                                          GTTTCGAAACCTCTCCGTCAGATAAAGCCGCAGCGTTTATTAAAGAGAAAGGGCAGTATCCGATGAATAAAGTCGCGACCGATGATATCGGGTTTGCGATTTATCAGGTGGATTTGAGTAAGTAAAACACTTCTTTTTCGGCCTATAAATCATCAACCGCATCCGGCATTTATTGGCGGATGC                                                                                                                                                                                                                                                      >  1:4904943/1‑183                                                                                                              TTATTAAAGAGAAAGGGCAGTATCCGATGAATAAAGTCGCGACCGATGATATCGGGTTTGCGATTTATCAGGTGGATTTGAGTAAGTAAAACACTTCTTTTTCGGCCTATAAATCATCAACCGCATCCGGCATTTATTGGCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAA                                                                                                                                                                                                        <  1:1368805/193‑1                                                                                                              TTATTAAAGAGAAAGGGCAGTATCCGATGAATAAAGTCGCGACCGATGATATCGGGTTTGCGATTTATCAGGTGGATTTGAGTAAGTAAAACACTTCTTTTTCGGCCTATAAATCATCAACCGCATCCGGCATTTATTGGCGGATGCGGGTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAA                                                                                                                                                                                                        >  2:1368542/1‑193                                                                                                                ATTAAAGAGAAAGGGCAGTATCCGATGAATAAAGTCGCGACCGATGATATCGGGTTTGCGATTTATCAGGTGGATTTGAGTAAGTAAAACACTTCTTTTTCGGCCTATAAATCATCAACCGCATCCGGCATTTATTGGCGGATGCGGTTGATGATTTATAGGC                                                                                                                                                                                                                                    <  1:4513958/163‑1                                                                                                                      GAGAAAGGGCAGTATCCGATGAATAAAGTCGCGACCGATGATATCGGGTTTGCGATTTATCAGGTGGATTTGAGTAAGTAAAACACTTCTTTTTCGGCCTATAAATCATCAACCGCATCCGGCATTTATTGGCG                                                                                                                                                                                                                                                           >  1:3681427/1‑134                                                                                                                      GAGAAAGGGCAGTATCCGATGAATAAAGTCGCGACCGATGATATCGGGTTTGCGATTTATCAGGTGGATTTGAGTAAGTAAAACACTTCTTTTTCGGCCTATAAATCATCAACCGCATCCGGCATTTATTGGCG                                                                                                                                                                                                                                                           <  2:3680825/134‑1                                                                                                                                 GTATCCGATGAATAAAGTCGCGACCGATGATATCGGGTTTGCGATTTATCAGGTGGATTTGAGTAAGTAAAACACTTCTTTTTCGGCCTATAAATCATCAACCGCATCCGGCATTTATTGGCG                                                                                                                                                                                                                                                           >  1:2593887/1‑123                                                                                                                                 GTATCCGATGAATAAAGTCGCGACCGATGATATCGGGTTTGCGATTTATCAGGTGGATTTGAGTAAGTAAAACACTTCTTTTTCGGCCTATAAATCATCAACCGCATCCGGCATTTATTGGCG                                                                                                                                                                                                                                                           <  2:2593456/123‑1                                                                                                                                                           ATGATATCGGGTTTGCGATTTATCAGGTGGATTTGAGTAAGTAAAACACTTCTTTTTCGGCCTATAAATCATCAACCGCATCCGGCATTTATTGGCGGATGC                                                                                                                                                                                                                                                      >  1:1450256/1‑102                                                                                                                                                           ATGATATCGGGTTTGCGATTTATCAGGTGGATTTGAGTAAGTAAAACACTTCTTTTTCGGCCTATAAATCATCAACCGCATCCGGCATTTATTGGCGGATGC                                                                                                                                                                                                                                                      <  2:1449981/102‑1                                                                                                                                                                                                                                                          cgtATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGAC  <  2:731898/248‑1                                                                                                                                                                                                                                                          CGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGAC  <  1:5641735/251‑1                                                                                                                                                                                                                                                          CGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGAC  <  2:3618817/251‑1                                                                                                                                                                                                                                                          CGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGAC  <  2:4276426/251‑1                                                                                                                                                                                                                                                          CGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGAC  <  1:3959931/251‑1                                                                                                                                                                                                                                                          CGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGAC  <  1:1728604/251‑1                                                                                                                                                                                                                                                          CGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGAC  <  1:3894740/251‑1                                                                                                                                                                                                                                                           GGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTT                                                                           >  1:4445220/1‑177                                                                                                                                                                                                                                                           GGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTT                                                                           <  2:4444452/177‑1                                                                                                                                                                                                                                                           GGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATC                                                                                 >  2:2367903/1‑171                                                                                                                                                                                                                                                           GGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCC                                                                                                                                          >  1:2177107/1‑114                                                                                                                                                                                                                                                           GGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCC                                                                                                                                          <  2:2176732/114‑1                                                                                                                                                                                                                                                                CGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTT                                                                        <  1:5679266/175‑1                                                                                                                                                                                                                                                                CGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTT                                                                        >  2:5678324/1‑175                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGGGAAATTCACCCGGCGGCAGATAACAACTGGCGTTTAGCACCGATAGCTGGCGATAAGAAACTGGATATCCGTTTCGAAACCTCTCCGTCAGATAAAGCCGCAGCGTTTATTAAAGAGAAAGGGCAGTATCCGATGAATAAAGTCGCGACCGATGATATCGGGTTTGCGATTTATCAGGTGGATTTGAGTAAGTAAAACACTTCTTTTTCGGCCTATAAATCATCAACCGCATCCGGCATTTATTGGCGGATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4434819‑4434563 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggatgcgGTTGATGATTTATAGGCCGAAAAAGAAGTGTTTTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCCCTTTCTCTTTAATAAACGCTGCGGCTTTATCTGACGGAGAGGTTTCGAAACGGATATCCAGTTTCTTATCGCCAGCTATCGGTGCTAAACGCCAGTTGTTATCTGCCGCCGGGTGAATTTCCCCCGCACGTTTCGAC  >  NC_000913/4434590‑4434832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.