Read alignment evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | position | change | freq | score | reads | annotation | genes | product | ||
* | NC_000913 | 4,568,608 | 0 | C→A | 11.0% | 10.9 ‑50.6 ‑0.2 | 520 | intergenic (‑89/‑390) | mdtM/yjiP | multidrug efflux system protein/pseudogene, transposase_31 family protein |
Rejected: Polymorphism prediction not supported by minimum number of reads on both strands. | ||||||||||
Reads supporting (aligned to +/- strand): new base (57/0): ref base (174/289): total (231/289) | ||||||||||
Fisher's exact test strand distribution p-value = 1.04e-22 | ||||||||||
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.53e-01 |
Only 100 of 520 total aligned reads displayed.
CGGCAGCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGTGGAAAGGGGAATATCTGCCGGGTACAGGACATGTAAAACG > NC_000913/4568360‑4568852 | gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGGAAACGAAAATTAATAACGTCGGGAATGACGAAAAGCAGGTGAGAAAGGCGAAGAGACAGCaaa > 2:5035445/1‑251 (MQ=255) cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGt < 2:4472169/250‑1 (MQ=255) cACGTACCACATTAATGATCCAAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACcac < 1:1000149/251‑1 (MQ=255) cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCacac < 1:3026336/251‑1 (MQ=255) ccACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCAAAAAAAACAACACCTTTTCC‑GGAG‑AAACCCCACGGGGAAAAAGAAAATTAATACCGCCGGTAATGACGAAAAGCAGGGGAGAAAGGCAAAAAGACTGCaaaattac > 2:3981424/1‑218 (MQ=255) acaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGGGGGTAAAAAAACGTAGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAGCGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc < 2:1899657/221‑1 (MQ=255) acaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAAAAAACAACTCCTTGTCC‑GGAG‑AACCCCCACGGGGAAAAAGAAAATCAATACCCTCGGGAATGACGAAAAGGAAGGGAGAAGGGGCACGAGACTGCAAAAGTACTGAAttt > 1:3800651/1‑228 (MQ=255) caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAACAACCCCCTGTCC‑GGGG‑GACCCCAACCGGGGAAAAGAAAATCAAAACCCTCGGGAAAGACGAAAAGCAAGGGGGAAGGGGAAAGAAACTGCCAAAGTACTGAATTTTCAGTAAACAACcacc > 2:480435/1‑242 (MQ=255) caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAAAAAATCCCTGTCC‑GGGG‑AAACCCCACGGGGGAAAAGAAAATTAAAACCGCCGGGAATGAAGGAAAGCAGGGGGGAAGGGGAAACGGAAAGCAAAAGTAAAGAAATTTAAGTAATAAAACACACAGcccgg > 1:2570312/1‑248 (MQ=255) tCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAGCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAACAACTCCCTGTCC‑GGGG‑AACCCCAACGGGGGAAAAGAAAATCAAAACCGTCGGGAATGAAGAAAAGCAGGGGGGAAGGGCAAAGAAACTGCAAAAGTACTGAAATTCATGTAATCAAACACACCTCCCCGGAAcacaca > 1:3721650/1‑251 (MQ=255) tCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg < 2:1220105/222‑1 (MQ=255) tCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAAAAAAAAAATCCCTTTCC‑GGAGAAACCCCAACGGGGAAAA‑GAAAATCAAAAACGCCGGGAATGACGAAAAGCAGGGGGGAAAGGGAAAGAGAAGGCAAAAGGAATGAATTTTATTTAATAAAACacacag > 2:5483720/1‑235 (MQ=255) tCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCCTAACAAACAAATCCCTTTCCGGGGG‑AACCCCAA‑AGGGAAAACAAAAATTAAAACACTCGGGGAATAAGAAAGGCAGGGGAGAAAGGGAACAAGAAAGAAAATGTACTGAGTTTAATTTAATTaaaccaccagccgttgaaaaacaa > 2:4680347/1‑229 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACacag < 2:2051232/251‑1 (MQ=255) ggCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAACAACTCCCTGTCC‑GGAG‑AACCCCAACGGGGGAAAAGAAAATCAAAACCGTCGGGAATGACGAAAGGGAGGGGGGAAGGGGAACgagaa > 1:4770410/1‑194 (MQ=255) gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACacagac < 2:4363585/248‑1 (MQ=255) gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACacagac < 1:5376523/248‑1 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACgag < 2:2301802/188‑1 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACCGGCACAAAAAACAAATCCCTTTCC‑GGAG‑AAACCCAACGGGGGAAAAGAAAATCAAAAACGTCGGGAATGACGAAAGGCAGGGGAGAAGAGGAACAAGACTGCAAAAGGACTGAATTTTATGGAATAAAACacacagacacggaaa > 2:4566094/1‑225 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAACAAACAACCCCCTTTCC‑CGGG‑AACCCCCACCGGGGAAAAGAAAATCAAAACCGGCGGTAATGACGAAAGGCACGTGAGAAGGGCAACGAAACTGCAAAAGTAATGAAATTCATGTAATAAAAcaa > 1:4221554/1‑222 (MQ=255) tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAAACAACAACCCCCTTTCC‑CGAG‑AACCCCCACGGGGAAAAAGAAAAACCAAACCCCCGGGGATGACGAAAAGCAGGGGGGAAGGGGAACAAGAATGCCAAAGTATTGAATTTTCTGTAATCAACCACCCCCCCTGTGTAAACACAAACAgagacaaaatttt > 2:2893111/1‑242 (MQ=255) gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc < 2:1044645/191‑1 (MQ=255) aCAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGGCTGCAAATGTACTGAATTTCATGTAATCAACCacac < 2:168444/211‑1 (MQ=255) aCAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACGGGCATAAAAAAAAAATCCCTGTCC‑GGAG‑AAACCCAACCGGGGAAACGAAAATCAAAACCCTCGGTAATGAAGAAAAGCAGGGGAGAAGGGGAAAGAGAACGCAAAAGTAATGAATTTCATGTAATCAAAcacaa > 1:168493/1‑210 (MQ=255) gATACGCAGCAAAATCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCATCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATATACTGAATTTCATGTAATCAACCACACTGCCTGTGAacac < 1:3554964/221‑1 (MQ=255) aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACacagac < 1:3354924/226‑1 (MQ=255) gcagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCacac < 2:391308/203‑1 (MQ=255) cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAacacac < 1:5848815/217‑1 (MQ=255) cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCCTAAAAAACAACCCCCTTTCC‑GGGG‑AAACCCCACGGGGGAAAAGAAAATCAATACCGTCGGGAATGAAGAAAAGCCGGGGGGAAAGGGAACGAAAATGCAAAAGTACTGAAatt > 2:4140918/1‑185 (MQ=255) gTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCacac < 1:884100/195‑1 (MQ=255) tCATACAAAATCAAAGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGACATAGCAAACAACTCCTTGTCC‑GGAG‑AAGCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAAc < 1:2346072/251‑1 (MQ=255) aTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGa < 1:2252744/251‑1 (MQ=255) tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaaa < 2:2163682/162‑1 (MQ=255) tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCCTTTCC‑GGAG‑AACCCCAACGGGGGAAACGAAATTCAATACCCTCGGTAATGACGAAAGGCAGGGGAGAAGGGCAACGAGACTGCaaa > 1:2164057/1‑162 (MQ=255) aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATaa < 2:1794226/242‑1 (MQ=255) aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACCCCCTGTCC‑GGAG‑AAACCCAACGGGGGAAACGAAAATCAATAACCTCGGTAATGAAGAAAAGCAGGGGGGAAGGGGAACGAGACTGCAAAAGAAATGAATTTTATGTAAACAAACACACCGCCTGTGGAAACAAAGAAAAAAAAAAACTTTTTTAATTCCGGGCCGAATGTATAAAGAATACaa > 2:273645/1‑251 (MQ=255) aTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATAc < 1:1944190/214‑1 (MQ=255) aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAACAAACAAACCCCTGTCC‑GGGG‑AACCCCCAAGGGGGAAAAGAAAATCAATACCGTCGGGAAAGAAGAAAGGCCGGGGGGAAGGGGAAAgag > 1:2484844/1‑144 (MQ=255) cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGtc < 1:4271901/251‑1 (MQ=255) cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGtc < 2:2569891/251‑1 (MQ=255) aTCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAc < 1:4971682/171‑1 (MQ=255) cGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGc < 2:1100292/251‑1 (MQ=255) cGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGc < 1:770694/251‑1 (MQ=255) gggAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACgag < 2:834827/136‑1 (MQ=255) gggAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGa < 1:5482935/232‑1 (MQ=255) ggAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAAt < 2:378677/153‑1 (MQ=255) gAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGcac < 2:5145566/250‑1 (MQ=255) gCGTGGCGGCATGGCGGGGAAAAAAAACTGGCATAACAAACAACTCCTTGTCC‑CGGG‑GACCCCCACGGGGGAAAAGAAAATCAATACCCTCGGTAATGACGAAAAGCAGGGGGGAAGGGCAACgagaa > 1:1878826/1‑127 (MQ=255) cGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTac < 1:2683837/246‑1 (MQ=255) cGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACAcc < 1:273717/249‑1 (MQ=255) gcggcATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATg < 1:2405626/209‑1 (MQ=255) gggTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGt > 2:65588/1‑251 (MQ=255) cGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGGCTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAac < 2:343121/148‑1 (MQ=255) tGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGtata < 2:5329788/190‑1 (MQ=255) gCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACacagac > 1:1104323/1‑152 (MQ=255) cATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATac < 1:5078238/251‑1 (MQ=255) cATAACAAACAACTCCTTGTCA‑GGAG‑AACCACAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATac < 1:2893568/251‑1 (MQ=255) aTAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACcac > 2:3849076/1‑129 (MQ=255) acaaacaaCTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTg > 1:4557599/1‑130 (MQ=255) acaaacaaCTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACacagacag < 1:4638343/149‑1 (MQ=255) aaacaaCTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCacac < 1:4379791/126‑1 (MQ=255) aaacaaCTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTg > 2:2676317/1‑223 (MQ=255) caacTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAAttt < 2:630109/106‑1 (MQ=255) aacTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATTACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAgtg < 2:2457479/251‑1 (MQ=255) aacTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAgtg < 1:623817/251‑1 (MQ=255) tCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAacacac < 1:3428891/134‑1 (MQ=255) tGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGa > 1:5594424/1‑174 (MQ=255) tGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTacac < 1:1214967/201‑1 (MQ=255) gTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa > 1:1320792/1‑84 (MQ=255) gTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCtgtg > 1:158238/1‑122 (MQ=255) gTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAac > 1:1463318/1‑125 (MQ=255) gTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAg > 1:3869969/1‑183 (MQ=255) cc‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAAc < 2:4264920/169‑1 (MQ=255) ggAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAAttt > 2:704881/1‑251 (MQ=255) ggAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAAttt > 2:4870529/1‑251 (MQ=255) gag‑aACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATAc < 2:5630827/138‑1 (MQ=255) g‑aACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCacac > 1:4087099/1‑107 (MQ=255) g‑aACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAacac < 1:5722590/120‑1 (MQ=255) aCCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACacagac < 2:5440208/124‑1 (MQ=255) aCCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGAc > 2:1130872/1‑142 (MQ=255) gggAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACg > 2:5917585/1‑57 (MQ=255) gggAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACg < 1:5918586/57‑1 (MQ=255) gAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAag < 2:3256206/250‑1 (MQ=255) aTTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAAc < 1:4716802/142‑1 (MQ=255) aTTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAAc > 2:4716000/1‑142 (MQ=255) aTTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTac < 2:1567848/169‑1 (MQ=255) aCCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACaa > 1:1776444/1‑143 (MQ=255) aaTGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGtata > 1:5253250/1‑124 (MQ=255) aTGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAAc > 2:2382563/1‑125 (MQ=255) ggTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACacag > 2:1449655/1‑72 (MQ=255) ggTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGcac > 2:3328810/1‑134 (MQ=255) gTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGTGGAAAGGGGAATATCTGCCGGGTACAgg < 1:65634/246‑1 (MQ=255) gggCAACGCGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGAAAGAGAAATACTTTCTGAATTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACAACTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAgtgt > 2:5783414/1‑177 (MQ=255) gggCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGtca > 1:4865782/1‑119 (MQ=255) gggCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAgtg > 2:3066585/1‑176 (MQ=255) gggCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGTGGAAAGGGGAATATc < 2:3609926/226‑1 (MQ=255) ggCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGaa > 1:3315843/1‑95 (MQ=255) ggCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGtc < 1:3128587/117‑1 (MQ=255) ggCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATggg > 1:3977881/1‑148 (MQ=255) cAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATac < 2:336267/163‑1 (MQ=255) | CGGCAGCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCC‑GGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACACTGCCTGTGAACACACAGACAGAGAAATACTTTCTGACTTCGGGTCAGAATGTATAACGATTACAAATAGTCATCAGCACATTACACCTCTTGAATTGATGGGTTGCATAGAAAATATACACCTTAAGTGTAATTAAAATTTGCGGTTAATCAAAAGAGCGCGGTGGAAAGGGGAATATCTGCCGGGTACAGGACATGTAAAACG > NC_000913/4568360‑4568852 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |