mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,395,213 | 0 | A | G | 37.5% | 31.9 / 34.3 | 40 | L349P (CTG→CCG) | yhdP | DUF3971‑AsmA2 domains protein |
| Marginal new junction evidence (lowest skew 10 of 19 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 43 (1.400) | 5 (0.170) | 5/580 | 3.1 | 11.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 33 (1.110) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4209454 = | 1 (0.030) | 6 (0.200) | 4/584 | 3.5 | 70.7% | noncoding (1308/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon |
| ? | NC_000913 | 4209476 = | 4 (0.130) | noncoding (1330/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | 4167966 = | 6 (0.200) | 6 (0.200) | 4/584 | 3.5 | 54.9% | noncoding (1308/1542 nt) | rrsB | 16S ribosomal RNA of rrnB operon |
| ? | NC_000913 | 4209476 = | 4 (0.130) | noncoding (1330/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | 4036838 = | 5 (0.160) | 6 (0.200) | 4/584 | 3.5 | 57.5% | noncoding (1308/1542 nt) | rrsA | 16S ribosomal RNA of rrnA operon |
| ? | NC_000913 | 4209476 = | 4 (0.130) | noncoding (1330/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | 3943115 = | 0 (0.000) | 6 (0.200) | 4/584 | 3.5 | 75.0% | noncoding (1308/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| ? | NC_000913 | 4209476 = | 4 (0.130) | noncoding (1330/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | = 3427448 | NA (NA) | 6 (0.200) | 4/584 | 3.5 | 60.6% | noncoding (1315/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 4209469 = | 4 (0.130) | noncoding (1323/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | = 2729850 | 1 (0.030) | 6 (0.200) | 4/584 | 3.5 | 70.7% | noncoding (1308/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 4209476 = | 4 (0.130) | noncoding (1330/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | = 3427433 | NA (NA) | 5 (0.170) | 3/584 | 4.0 | 83.7% | noncoding (1330/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 4209454 = | 1 (0.030) | noncoding (1308/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon | |||||
| * | ? | NC_000913 | = 3427433 | NA (NA) | 5 (0.170) | 3/584 | 4.0 | 46.0% | noncoding (1330/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 4167966 = | 6 (0.200) | noncoding (1308/1542 nt) | rrsB | 16S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913 | = 3427433 | NA (NA) | 5 (0.170) | 3/584 | 4.0 | 50.6% | noncoding (1330/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| ? | NC_000913 | 4036838 = | 5 (0.160) | noncoding (1308/1542 nt) | rrsA | 16S ribosomal RNA of rrnA operon | |||||