mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 40.0% | 13.9 / 17.8 | 22 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 13 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 381669 | NA (NA) | 7 (0.180) | 7/584 | 3.5 | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 4542682 = | 43 (1.100) | 6 (0.160) | 6/580 | 3.9 | 12.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 44 (1.160) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 1096961 = | 31 (0.800) | 7 (0.250) | 3/438 | 4.2 | 24.3% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 21 (0.740) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 4542690 | 43 (1.100) | 4 (0.110) | 4/580 | 4.7 | 8.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 44 (1.160) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4583137 | 52 (1.330) | 3 (0.080) | 3/586 | 5.3 | 5.9% | intergenic (‑89/+112) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme |
| ? | NC_000913 | = 4583224 | 45 (1.180) | intergenic (‑176/+25) | hsdM/hsdR | DNA methyltransferase M/endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | = 3989614 | 42 (1.080) | 3 (0.080) | 3/580 | 5.3 | 7.3% | coding (215/741 nt) | hemD | uroporphyrinogen III synthase |
| ? | NC_000913 | = 3989693 | 36 (0.950) | coding (136/741 nt) | hemD | uroporphyrinogen III synthase | |||||
| * | ? | NC_000913 | 3720289 = | 45 (1.150) | 3 (0.080) | 3/588 | 5.3 | 6.6% | intergenic (+28/+159) | cspA/mokA | RNA chaperone and antiterminator, cold‑inducible/pseudogene, overlapping regulatory peptide, enables hokB; completely contained in another CDS |
| ? | NC_000913 | 3720311 = | 40 (1.040) | intergenic (+50/+137) | cspA/mokA | RNA chaperone and antiterminator, cold‑inducible/pseudogene, overlapping regulatory peptide, enables hokB; completely contained in another CDS | |||||
| * | ? | NC_000913 | = 3304484 | NA (NA) | 3 (0.080) | 3/576 | 5.3 | NA | intergenic (+29/+89) | yhbW/mtr | putative luciferase‑like monooxygenase/tryptophan transporter of high affinity |
| ? | NC_000913 | = 3304553 | NA (NA) | intergenic (+98/+20) | yhbW/mtr | putative luciferase‑like monooxygenase/tryptophan transporter of high affinity | |||||
| * | ? | NC_000913 | = 1985111 | 29 (0.740) | 3 (0.080) | 3/576 | 5.3 | 10.0% | intergenic (‑42/+28) | araG/araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 1985112 | 26 (0.690) | intergenic (‑43/+27) | araG/araF | L‑arabinose ABC transporter ATPase/L‑arabinose ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3730307 = | 49 (1.260) | 3 (0.080) | 3/590 | 5.4 | 5.9% | coding (459/1323 nt) | xylA | D‑xylose isomerase |
| ? | NC_000913 | 3730327 = | 47 (1.220) | coding (439/1323 nt) | xylA | D‑xylose isomerase | |||||