mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.26.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 3,672,507 | 2 | .→T | 1.3% | 2.3 0.0 ‑0.5 | 153 | coding (94/900 nt) | yhjC | LysR family putative transcriptional regulator |
| * | NC_000913 | 3,880,487 | 4 | .→A | 1.2% | 2.2 0.0 ‑0.6 | 160 | coding (735/1074 nt) | recF | gap repair protein |
| * | NC_000913 | 4,085,001 | 1 | .→G | 1.3% | 2.2 0.0 ‑0.1 | 152 | coding (822/3051 nt) | fdoG | formate dehydrogenase‑O, large subunit |
| * | NC_000913 | 3,342,603 | 1 | .→A | 1.2% | 2.1 0.0 ‑0.5 | 164 | coding (331/567 nt) | kdsC | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate phosphatase |
| * | NC_000913 | 3,880,487 | 2 | .→T | 1.2% | 2.1 0.0 ‑0.6 | 160 | coding (735/1074 nt) | recF | gap repair protein |
| * | NC_000913 | 3,880,487 | 3 | .→T | 1.2% | 2.1 0.0 ‑0.6 | 160 | coding (735/1074 nt) | recF | gap repair protein |
| * | NC_000913 | 2,705,257 | 1 | .→T | 1.3% | 2.0 0.0 ‑0.2 | 151 | coding (53/975 nt) | lepB | leader peptidase (signal peptidase I) |
| * | NC_000913 | 3,880,487 | 7 | .→T | 1.2% | 1.9 0.0 ‑0.1 | 160 | coding (735/1074 nt) | recF | gap repair protein |
| * | NC_000913 | 3,880,487 | 1 | .→G | 1.2% | 1.7 0.0 ‑0.6 | 160 | coding (735/1074 nt) | recF | gap repair protein |
| * | NC_000913 | 3,880,487 | 5 | .→G | 1.2% | 1.7 0.0 ‑0.6 | 160 | coding (735/1074 nt) | recF | gap repair protein |
| * | NC_000913 | 3,342,591 | 2 | .→C | 1.2% | 1.6 0.0 ‑0.7 | 164 | coding (319/567 nt) | kdsC | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate phosphatase |
| * | NC_000913 | 3,880,487 | 6 | .→C | 1.2% | 1.6 0.0 ‑0.3 | 160 | coding (735/1074 nt) | recF | gap repair protein |
| * | NC_000913 | 2,660,628 | 1 | .→G | 1.3% | 1.5 0.0 ‑0.2 | 158 | coding (904/1215 nt) | iscS | cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent |
| * | NC_000913 | 3,342,591 | 1 | .→G | 1.2% | 1.5 0.0 ‑0.3 | 164 | coding (319/567 nt) | kdsC | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate phosphatase |
| * | NC_000913 | 3,672,507 | 1 | .→G | 1.3% | 1.5 0.0 ‑0.2 | 153 | coding (94/900 nt) | yhjC | LysR family putative transcriptional regulator |
| * | NC_000913 | 98,669 | 1 | .→A | 1.3% | 1.2 0.0 ‑0.1 | 157 | coding (267/1245 nt) | ftsW | putative lipid II flippase; integral membrane protein; FtsZ ring stabilizer |
| * | NC_000913 | 384,988 | 0 | T→G | 100.0% | 1.2 | 1 | intergenic (‑372/‑244) | yaiS/tauA | putative PIG‑L family deacetylase/taurine ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,299,679 | 0 | T→G | 100.0% | 1.2 | 1 | intergenic (+434/‑1503) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,055,119 | 1 | .→C | 1.2% | 1.2 0.0 ‑0.1 | 161 | coding (326/579 nt) | ygfB | UPF0149 family protein |
| * | NC_000913 | 1,299,511 | 0 | C→A | 100.0% | 1.0 | 1 | intergenic (+266/‑1671) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,299,527 | 0 | G→T | 100.0% | 1.0 | 1 | intergenic (+282/‑1655) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,942,303 | 0 | A→G | 100.0% | 1.0 | 1 | noncoding (496/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| * | NC_000913 | 385,001 | 0 | A→T | 100.0% | 0.8 | 1 | intergenic (‑385/‑231) | yaiS/tauA | putative PIG‑L family deacetylase/taurine ABC transporter periplasmic binding protein |
| * | NC_000913 | 2,033,923 | 0 | A→T | 100.0% | 0.8 | 1 | intergenic (‑439/‑128) | yedR/yedS | inner membrane protein/pseudogene, outer membrane protein homology; putative outer membrane protein |
| * | NC_000913 | 3,950,205 | 0 | T→A | 100.0% | 0.8 | 1 | intergenic (‑236/‑117) | yifB/ilvL | magnesium chelatase family protein and putative transcriptional regulator/ilvG operon leader peptide |
| * | NC_000913 | 3,942,289 | 0 | A→G | 100.0% | 0.7 | 1 | noncoding (482/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| * | NC_000913 | 3,942,291 | 0 | G→T | 100.0% | 0.7 | 1 | noncoding (484/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| * | NC_000913 | 384,994 | 0 | T→C | 100.0% | 0.6 | 1 | intergenic (‑378/‑238) | yaiS/tauA | putative PIG‑L family deacetylase/taurine ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,299,549 | 0 | C→A | 100.0% | 0.6 | 1 | intergenic (+304/‑1633) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,299,611 | 0 | G→C | 100.0% | 0.6 | 1 | intergenic (+366/‑1571) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,942,311 | 0 | C→A | 100.0% | 0.6 | 1 | noncoding (504/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| * | NC_000913 | 1,299,504 | 0 | G→T | 100.0% | 0.5 | 1 | intergenic (+259/‑1678) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,299,516 | 0 | C→T | 100.0% | 0.5 | 1 | intergenic (+271/‑1666) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,299,529 | 0 | T→C | 100.0% | 0.5 | 1 | intergenic (+284/‑1653) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,299,635 | 0 | T→G | 100.0% | 0.5 | 1 | intergenic (+390/‑1547) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,299,637 | 0 | T→G | 100.0% | 0.5 | 1 | intergenic (+392/‑1545) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,299,642 | 0 | T→G | 100.0% | 0.5 | 1 | intergenic (+397/‑1540) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,942,290 | 0 | C→G | 100.0% | 0.5 | 1 | noncoding (483/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon |
| * | NC_000913 | 458,206 | 1 | .→G | 1.3% | 0.3 0.0 ‑0.0 | 149 | coding (781/1275 nt) | clpX | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease |
| * | NC_000913 | 2,660,628 | 2 | .→A | 1.3% | 0.1 0.0 ‑0.0 | 158 | coding (904/1215 nt) | iscS | cysteine desulfurase (tRNA sulfurtransferase), PLP‑dependent |
| * | NC_000913 | 3,718,624 | 1 | .→T | 1.1% | 0.1 0.0 ‑0.0 | 178 | coding (421/711 nt) | yiaF | barrier effect co‑colonization resistance factor; DUF3053 family lipoprotein |