New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	55 (0.370)	45/514	NT	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

CCCACCCAGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCG  >  NC_000913/1978202‑1978777                                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                    cccacccaGAATAACCAACTTTATGTTTATGCGGTTTCACCGCACCACGTGAGGTCGCCGGGAAGCCACGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAAGGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG                                                                                                                                                                                                                                                                                     <  2:641761‑M1/301‑1 (MQ=255) cccacccaGAAGAACCAACTTTATTCGTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGGCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG                                                                                                                                                                                                                                                                                     <  2:110622‑M1/301‑1 (MQ=255)        aaaataACCAACTTTAATTGTATGCGGTTGTACCGAACCCCGGGATGTCGGCCGGAAGCCCCGGTAAAAAATAATGAGCATTAGAATAGTGGGGATAAGCTGTAAACAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCGTTACACTTATCTAAGATTTGTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                                                                                                                                                                                                              <  2:1167792‑M1/299‑8 (MQ=255)         aaatAACACACTGTAGTTTGATGCGGTTTAACCGAACCCCGGGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtc                                                                                                                                                                                                                                                                             <  1:563340‑M1/300‑9 (MQ=255)          aaTAACCAACTTTATTGTGATGCTGTTTCCCCACACCCCTCGATGTCGCCGTGAAGTCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCTATAAGCTTCAATAATCATCACCATCGTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTGTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGAGCACACAAAACACTCAAGTACTTAACATAAATGtataag                                                                                                                                                                                                                                                                               <  1:1160035‑M1/298‑7 (MQ=255)                  aatttatTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAAGAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAAACACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtc                                                                                                                                                                                                                                                                             <  2:854918‑M1/290‑9 (MQ=255)                  aCTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCTTCACTACCCGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCCCCAAAAACCCCCAATTACTTAACATAAATGtataagtcctgtttctt                                                                                                                                                                                                                                                                    >  1:854907‑M1/1‑284 (MQ=255)                                                                           aaaaTAATTAGAATTACAATAGTTGCGATAAGCGGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACGTATATAAGAGTTTTCCTAAATCGACGCAACCGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatg                                                                                                                                                                                                           <  2:817117‑M1/301‑75 (MQ=255)                                                                                      cATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTTGTTTAATAGGTCCTTAAAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTGCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGTATGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttc                                                                                                                                                                                                                                                     <  1:506440‑M1/248‑33 (MQ=255)                                                                                      cATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAACGtatacgtcatacttttgttttgggtgtatttcaatctgttaaaacgtttttcgctacgctagcacgcaaaaatgaaacaggaata                                                                                                                                                                                                >  2:146173‑M1/1‑216 (MQ=255)                                                                                      cATTAGAATAGTTGAGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACAAACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCCCACAAAACACTCAATTACTTAACATCACTGtataagtcatacttttgttttgggtgtatttc                                                                                                                                                                                                                                                     >  2:506448‑M1/1‑216 (MQ=255)                                                                                                               tatAAGCAGAACCCTCTTTTTGGTTTAATATGTCCTCACAAATAGAAATGGGTCTTTACACTTATCTAACATTTTTCCTAAATCGACGCCACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCTATTTTAAATAATGCGCGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacgtttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagt                                                                                                                                                                       <  1:72377‑M1/300‑111 (MQ=255)                                                                                                                  aaGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatact                                                                                                                                                                                                                                                                        >  1:1182288‑M1/1‑188 (MQ=255)                                                                                                                  aaGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatact                                                                                                                                                                                                                                                                        <  2:1182321‑M1/201‑14 (MQ=255)                                                                                                                                        tAATATGGTCATACAAATATAAATGGGTTCTGACACTTAACTAAGATTTTTCCGAAATCGACGCAACTGTACTCGTCACTACACGCACATACATCGGAGGGTGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatca                                                                                                                                              <  1:1197504‑M1/301‑136 (MQ=255)                                                                                                                                                    ttgtatcatgtacctttgttacacttatctaatattttTCCCTAATCAAAGCACCTGTGCTCGTCACTACACGGACATACAACGGAGTGGTGCTGCGATTTTCAATAATCCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcagacttttgtttttggtgtatttcaacctgttaaaaagtttttcgctactctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaat                                                                                                                                  <  1:1282760‑M1/283‑148 (MQ=255)                                                                                                                                                    aCAAATAGAAATGGGTCTGTACACTTATCTAAGATTTTTCCTAAAGCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAACGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaat                                                                                                                                  <  1:146169‑M1/301‑148 (MQ=255)                                                                                                                                                                  gTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcttacagtcaaaataaatcaccttaaataatcatctgctataaataatccctttcatta                                                                                                                    >  2:798738‑M1/1‑140 (MQ=255)                                                                                                                                                                   tCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactc                                                                                                                                                            >  2:407069‑M1/1‑139 (MQ=255)                                                                                                                                                                   tCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactc                                                                                                                                                            <  1:407062‑M1/260‑122 (MQ=255)                                                                                                                                                                   tCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGAACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAAAAAACACTCAATTACTTAACATACATGtataagtcatccttttgttttgggtgtatttccatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaaccggactaatcgaaatgggatcttgcgcacaggcaaaatacctcaccgtaaatcatcatatgctatacat                                                                                                                                  >  2:1282799‑M1/1‑139 (MQ=255)                                                                                                                                                                            ttATCTAAGAATTGTCCTAAATACACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCTATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagat                                                                                                          <  1:798728‑M1/301‑172 (MQ=255)                                                                                                                                                                                                       cAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgcaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccg                                                                               >  2:722866‑M1/1‑103 (MQ=255)                                                                                                                                                                                                            gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaag                                                                                                                                                                                                                                       <  2:873519‑M1/144‑47 (MQ=255)                                                                                                                                                                                                            gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaag                                                                                                                                                                                                                                       >  1:873508‑M1/1‑98 (MQ=255)                                                                                                                                                                                                             aatgtgtataagagaaagcatacaacggaggggggctgCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtatatgtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaac                                                                         <  1:1305907‑M1/283‑205 (MQ=255)                                                                                                                                                                                                              aCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtatatttcaatctgttcaaaagtttttcgctacgctagcaagcaaaaatgaaacaggcataatcgcaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctcgaactaatcactttcatgcaataccagctaagctctttttaaacagacccttaccgcacaaca                                                                        >  2:1165691‑M1/1‑96 (MQ=255)                                                                                                                                                                                                                      cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaatt                                                                >  2:289301‑M1/1‑88 (MQ=255)                                                                                                                                                                                                                           gccacataCAACGGAGGGGGGCTGAGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAAGTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                                                                                                                                                               <  2:95210‑M1/199‑119 (MQ=255)                                                                                                                                                                                                                           cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCACTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaacgtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtccacataa                                                                                                                                                               >  1:95207‑M1/1‑83 (MQ=255)                                                                                                                                                                                                                             cacaTACAACGGAGGGGGGCTTCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatac                                                          <  1:722857‑M1/300‑220 (MQ=255)                                                                                                                                                                                                                             cacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgc                                                                                                                    <  2:1180454‑M1/242‑162 (MQ=255)                                                                                                                                                                                                                             cacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgc                                                                                                                    >  1:1180421‑M1/1‑81 (MQ=255)                                                                                                                                                                                                                               caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtatatgtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataactaatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaac                                                                         >  2:1305947‑M1/1‑79 (MQ=255)                                                                                                                                                                                                                                   cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaacatgaaacaggaataatcgaaatgggat                                                                                                                                                                                   >  1:875600‑M1/1‑75 (MQ=255)                                                                                                                                                                                                                                   cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaatac                                                                                                               >  2:1253305‑M1/1‑75 (MQ=255)                                                                                                                                                                                                                                   cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaatac                                                                                                               <  1:1253268‑M1/241‑167 (MQ=255)                                                                                                                                                                                                                                   cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat                                                                                                                                                                                   <  2:875611‑M1/173‑99 (MQ=255)                                                                                                                                                                                                                                      cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTTAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggc                                                <  1:289295‑M1/301‑230 (MQ=255)                                                                                                                                                                                                                                                     aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttc                                                                                                                                                                                                                                                     <  2:714903‑M1/89‑33 (MQ=255)                                                                                                                                                                                                                                                     aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttc                                                                                                                                                                                                                                                     >  1:714894‑M1/1‑57 (MQ=255)                                                                                                                                                                                                                                                       tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                                                                                                                                                                  <  1:1367119‑M1/170‑116 (MQ=255)                                                                                                                                                                                                                                                       tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                                                                                                                                                                  >  2:1367159‑M1/1‑55 (MQ=255)                                                                                                                                                                                                                                                       tttAAAAAATGCGTGAAGAAGATCAAAAAAAACACGCAATTACGTAACATAAATGtataagtcatacttttgttttgggtgtatttcaagatggtaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggcaacaatcaacttaatgt                               <  1:1165658‑M1/301‑247 (MQ=255)                                                                                                                                                                                                                                                                      aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaatactcatctgctatcaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggcaacaatcaacttaatgttaatgaaatgtttta                >  1:1089687‑M1/1‑40 (MQ=255)                                                                                                                                                                                                                                                                      aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaat                                                                                                                                  >  1:976056‑M1/1‑40 (MQ=255)                                                                                                                                                                                                                                                                      aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                                                                                                                                                               >  1:263977‑M1/1‑40 (MQ=255)                                                                                                                                                                                                                                                                      aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggacgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaat                                                                                                                                  <  2:976069‑M1/187‑148 (MQ=255)                                                                                                                                                                                                                                                                         cAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggttgtatttcaatctgttaaaaagtttttcgctactctagcaagcaaaaatgaaacaggaataatcgaatttggattttgcgcacagtcaaaataactcacattaaataatcatctgctataaataatcactttactgcactaccagataagctatttttaaacagacacttaccgcaaaacaaactaattaaatacaaagaaaggcaacaatcaacttaatgttaatgaaatgttttacaa             >  1:1442674‑M1/1‑37 (MQ=255)                                                                                                                                                                                                                                                                             tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataacccaccgtaaataatcatctgctataaataatccctttcatgcaataccagctaagctatttttaaacagacacttaccgcacaacaacctaattcaatacaatgaaaggaaacaataaacttcatgttaatgaactgttttacatatat         >  1:1540695‑M1/1‑33 (MQ=255)                                                                                                                                                                                                                                                                               acacaAAACACTCAATTACTTAACATAAATGtataag                                                                                                                                                                                                                                                                               >  2:653359‑M1/1‑31 (MQ=255)                                                                                                                                                                                                                                                                               acacaAAACACGCAATTACTTAACATAAATGtataag                                                                                                                                                                                                                                                                               <  1:653351‑M1/37‑7 (MQ=255)                                                                                                                                                                                                                                                                                   aaaaCACTCAATTACTTAACAAAAATGtataaggcatacttttgttttgggtgtatttcaatctgttaaaaagttgttcactacgctagcaagaaaaaatgaaacaggaataagtgaaatgggatgttgcgcaaagtcaaaataactcaccgtaaataatcaactgatataaataatcactttcatgcaataacagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaagaaaggcaacaatcaacttaatgttaatgaaatgttttacatatattaacca   <  2:1442716‑M1/301‑275 (MQ=255)                                                                                                                                                                                                                                                                                     gcattacaccagtgaaagcatcgagggTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGCCTTCCGTCCCAGCCGTTCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTCTATCGCTTGCTGCTTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGTCCAGCCATCCGTCATCCATCTCACCACTTCAAAGGGTGACCGCAGGCTCATAACACCCCCCAGCg  >  2:1418906/25‑300 (MQ=11)                                                                                                                                                                                                                                                                                      acacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaata                                                                                                                                                                <  1:277748‑M1/141‑118 (MQ=255)                                                                                                                                                                                                                                                                                      acacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaata                                                                                                                                                                >  2:277755‑M1/1‑24 (MQ=255)                                                                                                                                                                                                                                                                                           cAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggactaatcgaaatgggatgttgcgcacagtcacaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaacaa                                                     >  1:597507‑M1/1‑19 (MQ=255)                                                                                                                                                                                                                                                                                           cAATTACTTAACAGAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaattaaatacaaaga                                                     <  2:597515‑M1/243‑225 (MQ=255)                                                                                                                                                                                                                                                                                                        tAAATGtataagtcatacttttgttttgggtgtatttcaatc                                                                                                                                                                                                                                                 <  1:1112174‑M1/42‑37 (MQ=255)                                                                                                                                                                                                                                                                                                           aTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttac                                                                                 >  2:1384496‑M1/1‑3 (MQ=255)                                                                                                                                                                                                                                                                                                           aTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttac                                                                                 <  1:1384455‑M1/199‑197 (MQ=255)                                                                                                                                                                                                                                                                                                           aTGtataagtcatacttttgttttgggtgtatttaaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttaccgcacaacaaactaatta                                                               <  1:715332‑M1/217‑215 (MQ=255)                                                                                                                                                                                                                                                                                                            tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttac                                                                                 >  2:190937‑M1/1‑2 (MQ=255)                                                                                                                                                                                                                                                                                                            tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataatcactttcatgcaataccagataagctatttttaaacagacacttac                                                                                 <  1:190933‑M1/198‑197 (MQ=255)                                                                                                                                                                                                                                                                                                             gtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaactgggatgttgcgcacagtcaaaataactcaccgtaaataatca                                                                                                                                              >  2:874426‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                                                                                             gtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaataat                                                                                                                               <  2:1366687‑M1/151‑151 (MQ=255)                                                                                                                                                                                                                                                                                                             gtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaat                                                                                                                                  >  1:806708‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                                                                                             gtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgctataaat                                                                                                                                  <  2:806718‑M1/148‑148 (MQ=255)                                                                                                                                                                                                                                                                                                             gtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataacgaaccgtaaataatcatctgctataaataat                                                                                                                               >  1:1366647‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                                                                                             gtataagtcatacttttgttttgggtggatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatca                                                                                                                                              <  1:874415‑M1/136‑136 (MQ=255)                                                                                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                                                    CCCACCCAGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCG  >  NC_000913/1978202‑1978777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.