Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0009133,424,9880A→T100.0% 1.0 2noncoding (1796/2904 nt)rrlD23S ribosomal RNA of rrnD operon
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (1/0):  ref base (1/0):  total (2/0)

CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCTTGCGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCACTTTCGTGTTTGCACAGTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTATCTTCGACTGATTTCAGCTCCACGAGCAAGTCGCTTCACCTACATATCAGCGTGCCTTCTCCCGAAGTTACGGCACCATTTTGCCT‑AGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTGTGTCGGTTTGGGGTACGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCCTCGTCATCACGCCTCAGCCTTGATTTT  >  NC_000913/3424862‑3425282
                                                                                                                              |                                                                                                                                                                                                                                                                                                       
ccGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCTTGCGCTGACCCCATCACTTAACCTTCCGGCACCGGGCAGGCGTCACCCCGTATCCGCCCACTTTCGTGTTGGCACTGTGCTGTGTTTTTACTAGACAGTTGCCGCTCGCTGGTATCTTCGAATGATTTCAGCTCCACGAGCAATTCACTGCACCCACATAATAGCGTCCCTTCACCCGACGTTACGGCACCCTTTTGCCTCTGTTCTCTGA‑CCGTGTACTCCAAAACACCTTGGTATtctccgctctctt                                                                                                                          >  1:849223/1‑292 (MQ=11)
                                                                                                                          gCATAGTGCTGTGTTTTTAATAAACAGTTGCAGCCAGATGGTATCTTCGACTGATTTCAGCACCACGAGTAAGTCGCTTCACATACAGACGAGCGTGCCTTCTACCGAAGCCACGCCGCTATTTTGACG‑ACTACCTGCAACAGAGTTATCACAAGAGCCATGGTGTTCTCTAATTGCTCTTCTGTGTTGGTTTGAGATACGATTTGATGTTACCTCAGGTTTCGTCGTTTTTCCTGTATATGGGTTTTTTGTTGCTTCAGCACCTTGGCGCCttttctccccatctaagcctttctttt  >  1:20328/1‑273 (MQ=0)
                                                                                                                              |                                                                                                                                                                                                                                                                                                       
CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCTTGCGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCACTTTCGTGTTTGCACAGTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTATCTTCGACTGATTTCAGCTCCACGAGCAAGTCGCTTCACCTACATATCAGCGTGCCTTCTCCCGAAGTTACGGCACCATTTTGCCT‑AGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTGTGTCGGTTTGGGGTACGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCCTCGTCATCACGCCTCAGCCTTGATTTT  >  NC_000913/3424862‑3425282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.