Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0009134,251,5100G→A100.0% 2.6 2pseudogene (550/1323 nt)yjbIpseudogene, SopA‑related, pentapeptide repeats‑containing
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (0/1):  ref base (0/1):  total (0/2)

AAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGATTATGTGCGAATGTCGACAGGGAATTTTAAAGATTGCATTACAGAACAATTGGAATTAACTATTGATTATTCAGATATATTTTGGAATGAAGATCTCGATGGTTATATCAATAACATTATAAAAATGATTGATACATTGCCAGATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGAT  >  NC_000913/4251236‑4251731
                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                             
aaaaaatCTTGATAAAAGTGAAGTCTCGCAGAATAAAATTGGGCATAGTAATTTTCCGGAATGTCAGATTAGAAAATCAAACTTCGATAATTGTTATCTTTAAGCATCGGACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGATTATGTGCGAATGTAGACAGGGAATTTTAAAGATTGCATTACAGAACAATTGGAATTAACTATTGATTATTCAGATATATTTTGGAATAAAGATCTCGATGGTTATATCAATAAc                                                                                                                                                                                                     <  1:186162/295‑1 (MQ=255)
                                                                                                                                                                                                   aaTGTTGATAGGGAATTTTAAAGAATGCATTACAGAACAATTGGAAATAACTAGTGATTATTCAGATATATTTTGGAATGAAGATCTCGATGGTTATATCAATAACATTATAAAAATGATTGATACATTGCCAGATAATGCAATTATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGAt  <  1:821029/301‑1 (MQ=255)
                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                             
AAATATTCTTGATACAGTTGACTTCTCGCAGAGTCAACTTGGTCATAGTAATTTTCGCGAATGTCAGATTAGAAATTCAAACTTCGATAATTGTTATCTTTACGCTTCGCACTTCACCAGAGCAGAGTTTCTGTCTGCCAAAGAAATATCATTTATTAAATCGAATTTGACAGCTGTTATGTTTGATTATGTGCGAATGTCGACAGGGAATTTTAAAGATTGCATTACAGAACAATTGGAATTAACTATTGATTATTCAGATATATTTTGGAATGAAGATCTCGATGGTTATATCAATAACATTATAAAAATGATTGATACATTGCCAGATAATGCAATGATATTGAAATCCGTTCTGGCCGTAAAACTGGTGATGCAATTAAAAATACTTAATATTGTTAATAAAAACTTTATTGAGAATATGAAGAAAATATTTAGCCATTGTCCTTATATAAAAGATCCCATTATACGCAGTTATATCCATTCTGATGAAGAT  >  NC_000913/4251236‑4251731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.