Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0009131,958,3050A→C100.0% 0.9 1intergenic (‑173/+215)torY/cutCTMAO reductase III (TorYZ), cytochrome c‑type subunit/copper homeostasis protein
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (1/0):  ref base (0/0):  total (1/0)

TCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCACAACACTGCCTGAAACAATCGATAAAGAATATGATTTATTACAATGTAATCATTAATTGCTAAGGAATAACCCAGTTGCTATTTAGAATATATATTTATCAGTTTTAGTAATTTAAATCCCATAATTAATGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGG  >  NC_000913/1958166‑1958469
                                                                                                                                           |                                                                                                                                                                    
tCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCACAACACTGCCTGAAACAATCGATAAAGAATATGATTTATTACAATGTAATCATTAATTGCTAAGGAATAACCCAGTTGCTATTTAGAatatata                                                                                                                                                                  >  1:108593/1‑144 (MQ=255)
tCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCACAACACTGCCTGAAACAATCGATAAAGAATATGATTTATTACAATGTAATCATTAATTGCTAAGGAATAACCCAGTTGCTATTTAGAatatata                                                                                                                                                                  <  2:108594/144‑1 (MQ=255)
   ttGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCACAACACTGCCTGAAACAATCGATAAAGAATATGATTTATTACAATGTAATCATTAATTGCTACGGAATAACCCAGTTGCTATTTAGAATCTATATTTATCAGTTTTAGTAATTTAAATCCCATAATTAATGTGAATATATACAATATTTTTAACACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATACTTCGTTTTTTATACTGTTCAGGTATAAAAAAAGGCCCCTGTTGAAATTTCAggg  >  2:960571/1‑301 (MQ=255)
                                                                                                                                           |                                                                                                                                                                    
TCATTGTATAATTAAATATACAACGAATTAACCGCTTGCATAATTAGGCACAACACTGCCTGAAACAATCGATAAAGAATATGATTTATTACAATGTAATCATTAATTGCTAAGGAATAACCCAGTTGCTATTTAGAATATATATTTATCAGTTTTAGTAATTTAAATCCCATAATTAATGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGG  >  NC_000913/1958166‑1958469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.