Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0009132,884,3980A→C100.0% 0.0 2intergenic (‑260/+155)casA/ygcBCRISP RNA (crRNA) containing Cascade antiviral complex protein/Cascade complex anti‑viral R‑loop helicase‑annealase Cas3
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (1/0):  ref base (0/1):  total (1/1)

ATTAAGATGTGTTGAATTGTTTAAAGACAATAATGCATGCATTTCAAATCTGCAAGTTATTCGTTTTATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCA‑GGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCC  >  NC_000913/2884300‑2884625
                                                                                                  |                                                                                                                                                                                                                                    
atTAAGATGTGTTGAATTGTTTAAAGACAATAATGCATGCATTTCAAATCTGCAAGTTATTCGTTTTATTATTAAAGAAA‑TTTTAGGTATAATAATTCCCATGGAATTTATTTAATAAAATTTTTAAAACTTCGATATAAAAACCCATACCCGGGAAATAAAAAAAGAAGTAAATTGGTCAACTTTCCCAATTAAGTAGGGATAAACCGGTAATGGTCCTTTTCACGCTATTGATTAACATCAATCCCGAAAGTATTTTGGAATTTCATGGCATGCCTTTGGACACCCCTCAATcccagtt                           >  2:509201/1‑297 (MQ=255)
                           aaaaaaaggaatcatTTATAATATTCAAATTATTCGTTTTAATATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACACTGTGCACCTTCCATACTTAAGTAGGGATAAACCGTTATTGGTCTTATTAGCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCA‑GGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTAccc  <  1:509196/287‑1 (MQ=255)
                                                                                                  |                                                                                                                                                                                                                                    
ATTAAGATGTGTTGAATTGTTTAAAGACAATAATGCATGCATTTCAAATCTGCAAGTTATTCGTTTTATTATTAAAGAAACTTTTAGTTATAATAATTACCATGAATTTTATTACATAAAATATTCATACTGTGAATATAAAATCTCATACCGGGAAATTAAAAGAAGATGTACATTGTGCACCTTCCCTACTTAAGTAGGGATAAACCGTTATTGGTCTTATTATCGTCATTGATAACAATCATTCCCGAAGTTATTTGGGATTTGCA‑GGGATGACTCTGGTCATCCCTTCATCCCCTGTATAGGTAATAACAATACTGTTACCC  >  NC_000913/2884300‑2884625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.