mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 35.4% | 112.1 / 86.6 | 103 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,286 | 0 | C | T | 21.9% | 204.2 / 48.9 | 105 | intergenic (+492/+150) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 190 (1.110) | 53 (0.420) | 20/438 | 11.6 | 29.9% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 109 (0.870) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 4542690 | 183 (1.070) | 17 (0.100) | 17/580 | 17.5 | 9.2% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 160 (0.960) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 183 (1.070) | 18 (0.110) | 15/580 | 18.5 | 9.6% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 162 (0.970) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 2713829 | 134 (0.780) | 6 (0.040) | 6/576 | 24.6 | 4.3% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase |
| ? | NC_000913 | = 2713908 | 139 (0.840) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase | |||||
| * | ? | NC_000913 | 438168 = | 176 (1.030) | 10 (0.060) | 5/584 | 25.7 | 5.3% | intergenic (‑33/+147) | yajO/dxs | 2‑carboxybenzaldehyde reductase/1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
| ? | NC_000913 | 438259 = | 185 (1.100) | intergenic (‑124/+56) | yajO/dxs | 2‑carboxybenzaldehyde reductase/1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring | |||||
| * | ? | NC_000913 | = 190619 | 156 (0.910) | 6 (0.040) | 5/584 | 25.7 | 3.8% | intergenic (+20/‑238) | rpsB/tsf | 30S ribosomal subunit protein S2/translation elongation factor EF‑Ts |
| ? | NC_000913 | = 190732 | 151 (0.900) | intergenic (+133/‑125) | rpsB/tsf | 30S ribosomal subunit protein S2/translation elongation factor EF‑Ts | |||||
| * | ? | NC_000913 | = 2746335 | 157 (0.910) | 5 (0.030) | 5/590 | 25.9 | 3.1% | intergenic (‑150/+99) | rpsP/ffh | 30S ribosomal subunit protein S16/Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) |
| ? | NC_000913 | = 2746413 | 159 (0.940) | intergenic (‑228/+21) | rpsP/ffh | 30S ribosomal subunit protein S16/Signal Recognition Particle (SRP) component with 4.5S RNA (ffs) | |||||
| * | ? | NC_000913 | 438164 = | 176 (1.030) | 10 (0.060) | 5/592 | 25.9 | 5.2% | intergenic (‑29/+151) | yajO/dxs | 2‑carboxybenzaldehyde reductase/1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring |
| ? | NC_000913 | 438263 = | 190 (1.120) | intergenic (‑128/+52) | yajO/dxs | 2‑carboxybenzaldehyde reductase/1‑deoxyxylulose‑5‑phosphate synthase, thiamine triphosphate‑binding, FAD‑requiring | |||||
| * | ? | NC_000913 | 2255850 = | 174 (1.010) | 24 (0.140) | 5/598 | 26.1 | 12.1% | coding (496/660 nt) | yeiL | putative transcriptional regulator |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 937227 | NA (NA) | 4 (0.020) | 4/582 | 26.6 | NA | noncoding (4/36 nt) | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 937259 | NA (NA) | noncoding (36/36 nt) | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||