New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3381839 =	172 (1.140)	5 (0.030)	5/524	NT	2.9%	coding (1097/1368 nt)	degQ	serine endoprotease, periplasmic
	?	NC_000913	3381869 =	172 (1.180)					coding (1127/1368 nt)	degQ	serine endoprotease, periplasmic

GACATCACACGTAAGCCTGATGCCCGGTTTACGACATTAACGCATCAGCAGATAGATGCTTTCATTGCCGCGTACAATTTGCAGGGCGATGATGGCCGGTTTTGCCGCCAGCACTTTACGCATTTCAGCAATCGAGTTCACCCGATCGCGGTTGACGCCAATGATCACATCGTCTTTTTGCAAGCCAGCCTGAGCAGCTGGGCTTCCTTTGACAACTTCATCGATTTTAATACCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3382146‑3381839 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgctggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGTCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCATCTATCTGCTGATGCGTTAATGTCGTAAACCGGGCATCAGGCTTACGTGTGATGTCCGGTTAACTCGTGGTA  >  NC_000913/3381869‑3382162                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GACATCACACGTAATCCTGATGCCCGGTTTACGACATGACTGTATCAGCAGATAGATGCTTTCATTGCCGCGTACAATTTGCAGGGCGATGATTGCCGCGTTTGCCGCCAGCACTTTACGCATTTCAGCAATCGAGTTCACCCGATCGCGGTTGACGCCAATGATCACATCGTCTTTTTGCAAGCCAGCCTGAGCAGCTGGGCTTCCTTTGACAACTTCATCGATTTTAATACCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                                                                                                                                                                                                                                                                <  2:1158528/300‑1  actttaccccgAAGCCTGATTCCCGGTTGAAGACATTAACGCACCAGCAGATAGATGCTTTCATTGCCGCGTACAATTTGCAGGGCGATGATGGCCGGTTTTGCCGCCAGCACTTTACGCATTTCAGCAATCGAGTTAACCCGATCGCGGTTGACGCCAATGATCACATCGTCTTTTTGCAAGCCAGCCTGAGCAGCTGGGCTTCCTTTGACAACTTCATCGATTTTAATACCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAG                                                                                                                                                                                                                                                                                                              <  1:20168/290‑1     aCACACGTAAGCCTGATGACCGGTTTACGACATTAACGCATCAGCAGATAGATGCTTTCATTGCCGCGTACAATTTGCAGGGCGATGATGGCCGGTTTTGCCGCCAGCACTTTACGCATTTCAGCAATCGAGTTCACCCGATCGCGGTTGACGCCAATGATCACATCGTCTTTTTGCAAGCCAGCCTGAGCAGCTGGGCTTCCTTTGACAACTTCATCGATTTTAATACCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                                                                                                                                                                                                                                                           <  2:443284/300‑1     TCACGCGTAACCCGGATGTCCTGTTTACGACATTAACGAATAAGCATATAGAGGCGTTCATTGCCGCGTACAATTTGCAGGGCGATGATGGCCGGTTTTGCCGCCAGCACTTTACGCATTTCAGCAATCGAGTTCACCCGATCGCGGTTGACGCCAATGATCACATCGTCTTTTTGCAAGCCAGCCTGAGCAGCTGGGCTTCCTTTGACAACTTCATCGATTTTAATACCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                                                                                                                                                                                                                                                           <  1:84287/301‑1     TCACAAGTAAGCCTGATGCCCGGGTTACGACAGTAACGCATCAGCAGATAGATGCTTTCATTGCCGCGTACAATTTGCAGGGCGATGAGGGCCGGTTTTGCCGCCAGCACTTTACGCATTTCAGCAATCGAGTTCACCCGATCGCGGTTGACGCCAATGATCACATCGTCTTTTTGCAAGCCAGCCTGAGCAGCTGGGCTTCCTTTGACAACTTCATCGATTTTAATACCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                                                                                                                                                                                                                                                           <  1:1326379/301‑1        CACGTAAGCCTGATGCCCGGTTTACGACATTAACGCATCAGCAGATAGATGCTTTCATTGCCGCGTACAATTTGCAGGGCGATGATGGCCGGTTTTGCCGCCAGCACTTTACGCATTTCAGCAATCGAGTTCACCCGATCGCGGTTGACGCCAATGATCACATCGTCTTTTTGCAAGCCAGCCTGAGCAGCTGGGCTTCCTTTGACAACTTCATCGATTTTAATACCTTTGCCGCCCTCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAACCCCGGCGTGCTCCTTTCATCGCTGG                                                                                                                                                                                                                                                                                                        >  1:749763/1‑301        CACGTAAGCCTGATGCCCGGTTTACGACATTAACGCATCAGCAGATAGATGCTTTCATTGCCGCGTACAATTTGCAGGGCGATGATGGCCGGTTTTGCCGCCAGCACTTTACGCATTTCAGCAATCGAGTTCACCCGATCGCGGTTGACGCCAATGATCACATCGTCTTTTTGCAAGCCAGCCTGAGCAGCTGGGCTTCCTTTGACAACTTCATCGATTTTAATACCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCCTGATCATTTCAGCGCTGG                                                                                                                                                                                                                                                                                                        >  2:295336/1‑301         ACGTAAGCCTGATGCCCGGTTTACGACATTAACGCATCAGCAGATAGATGCTTTCATTGCCGCGTACAATTTGCAGGGCGATGATGGCCGGTTTTGCCGCCAGCACTTTACGCATTTCAGCAATCGAGTTCACCCGATCGCGGTTGACGCCAATGATCACATCGTCTTTTTGCAAGCCAGCCTGAGCAGCTGGGCTTCCTTTGACAACTTCATCGATTTTAATACCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                                                                                                                                                                                                                                                        >  2:1381968/1‑300                         CGGTTGACGACATTAACGCATCAGCAGATAGATGCTTTCATTGCCGCGTACAATTTGCAGGGAGATGATGGCCGGTTTTGCCGCCAGCACTTTACGCATTTCAGCAATCGAGTTCACCCGATCGCGGTTGACGCCAATGATCACATCGTCTTTTTGCAAGCCAGCCTGAGCAGCTGGGCTTCCTTTGACAACTTCATCGATTTTAATACCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGC                                                                                                                                                                                                                                                                                       <  2:1448227/301‑1                                CGACATTAACGCATCAGCAGATATATGCTGTCATTGCCGCGTACAATTTGCAGGGAGATGATGGCCGGTTTTGCCGCCAGCACTTGACGCAGTTCAGCAATCGAGTTCACCCGATCGCGGTTGACGCCAATGATCACATCGTCTTTTTGCAAGCCAGCCTGAGCAGCTGGGCTTCCTTTGACAACTTCATCGATTTTAATACCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTC                                                                                                                                                                                                                                                                                <  2:1426408/301‑1                                                                                                                                      GAGTTCACCCGATCGCGGTTGACGCCAAGGATCACATCGTCTTTTTGCAAGCCAGCCTGAGCAGCTGGGCTTCCTTTGACAACTTCATCGATTTTAATACCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTCCCAGCGCTGGTGTGATCATTTCAGCGCTGGAAGGTGCAACGT                                                                                                                                                                                                                                                                                            <  2:512432/187‑1                                                                                                                                                                                       AGCCAGCCTGAGCAGCTGGGCTTCCTTTGACAACTTCATCGATTTTAATACCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGA                                                                                                                                                                                                                                                                      <  2:243071/160‑1                                                                                                                                                                                       AGCCAGCCTGAGCAGCTGGGCTTCCTTTGACAACTTCATCGATTTTAATACCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGA                                                                                                                                                                                                                                                                      >  1:243069/1‑160                                                                                                                                                                                                                                                                                                              GCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGTCACCCGCGATCGGGTGAACTCGATTGCTGCAATGCGTAAAGTGCTGGCTGCAAAACCGGCCATCATCGCCCTGCAACTTGTACGCGGCAGTGAAAGCATCTTTCTGCTGATGCGTTGATGTCGTAACCCGGGCATCAGGCTTACGTCTGATTTCCGGTTAACTCGTGGTA  >  2:1465557/1‑301                                                                                                                                                                                                                                                                                                              GCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGTCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCACATTGTACGCGGCAATGAAAGCATCTACCTGATGATGCGTGAATGTCGTAAACCGGGCATCAGGCTTACGTGGGATGTCCGGTTAACTCGTGGTA  >  1:764987/1‑301                                                                                                                                                                                                                                                                                                               gGCTGGAAGGTGAAACGTTGAGCGAGGGTCAGTGAAAAGATGGCGGCAAAGGGATTAAAATCGATGAAGGTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGTCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGGACGCGGCAATGAAAGCATCTATCTGCTGATGCGTTAATGTCGTAAACCGGGCATCAGGCTTACGTGTGATGTCCGGTTAACTCGTGGTA  <  1:461908/299‑1                                                                                                                                                                                                                                                                                                               CGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGTCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCATCTATCTGCTGATGCGTTAATGTCGTAAACCGGGCATCAGGCTTACGTGTGATGTCCGGTTAACTCGTGGT   <  2:481386/299‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GACATCACACGTAAGCCTGATGCCCGGTTTACGACATTAACGCATCAGCAGATAGATGCTTTCATTGCCGCGTACAATTTGCAGGGCGATGATGGCCGGTTTTGCCGCCAGCACTTTACGCATTTCAGCAATCGAGTTCACCCGATCGCGGTTGACGCCAATGATCACATCGTCTTTTTGCAAGCCAGCCTGAGCAGCTGGGCTTCCTTTGACAACTTCATCGATTTTAATACCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3382146‑3381839 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgctggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTGTCAAAGGAAGCCCAGCTGCTCAGGCTGGCTTGCAAAAAGACGATGTGATCATTGGCGTCAACCGCGATCGGGTGAACTCGATTGCTGAAATGCGTAAAGTGCTGGCGGCAAAACCGGCCATCATCGCCCTGCAAATTGTACGCGGCAATGAAAGCATCTATCTGCTGATGCGTTAATGTCGTAAACCGGGCATCAGGCTTACGTGTGATGTCCGGTTAACTCGTGGTA  >  NC_000913/3381869‑3382162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.