| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 939,377 | T→C | 8.2% | intergenic (+40/‑51) | rarA → / → serS | recombination intermediate processing DNA‑dependent ATPase/seryl‑tRNA synthetase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 939,377 | 0 | T | C | 8.2% | 150.2 / 2.2 | 55 | intergenic (+40/‑51) | rarA/serS | recombination intermediate processing DNA‑dependent ATPase/seryl‑tRNA synthetase |
| Reads supporting (aligned to +/- strand): ref base T (23/27); new base C (2/3); total (25/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTCGTAAAGTATTGCAGGTCAAAACGGAAAACCTGCAAGCGGAGCGTAACTCCCGATCGAAATCCATTGGCCAGGCGAAAGCGCGCGGGGAAGATATCGAGCCTTTACGTCTGGAAGTGAACAAACTGGGCG > NC_000913/939079‑939665 | aagCCCGGATTATGTCGTTCAGGTTCATTTGCGTAATGTGCCAACTAAAATAATGAAGGAAATGGGCTACGGGCAGGAATATCGATACGCTCATGATGAAGCAAACGGTTATGCTGCCGGTGATGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCg < 2:11318/299‑1 (MQ=255) cGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGTTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGAGATCgg > 2:242255/1‑300 (MQ=255) gggCCGGTTCATTTTCTTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTAGGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGCCACAGCCTGCGACcacag < 1:246132/299‑2 (MQ=255) ccGGTTCATTTGCGTAATGCGCCGTCGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGCCACAGCCTGCGACcacaggga < 1:609017/301‑5 (MQ=255) cGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGACGGCTGAACAGGATCAAAATAGCACCATAAAACGCTACCGTTAATGTTATCGTTGAGGTAATGTTGTTACTGTAT‑CCCTTTGTCCGCAAACTGGGGCcacaccacc > 1:621380/1‑296 (MQ=255) ggttgtttgtgggagttcgtcgaagaATTTAAGGAAGGAAGTGGGTTACGGGAAGGAAGATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTGCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTccc < 1:377456/281‑1 (MQ=255) cATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAAAGCAACCGTTAAGGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCGGTGGCCACATAGCCCAttt > 2:214795/1‑301 (MQ=255) ttttGGGGAATGCGCCGACGAAATTAATTAAGGAAATGGGCTACGGGCAGGAATATGGTTACGCTCATGATTAAGCAAACGCTTATGCTGCCGGTGGGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGCCACAGCCTGCGACcacagggatacagta < 1:376671/300‑12 (MQ=255) aTTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGCCACAGCCTGCGACcaaagggatacagta > 2:377167/1‑288 (MQ=255) cgcCGACGAAATTAATGAAGGAAATGGGTTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGca < 2:622239/301‑1 (MQ=255) tgctcttccgatctaaGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCGCAg < 2:300683/287‑1 (MQ=255) cgaAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGAt < 2:465792/301‑1 (MQ=255) gaAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATa > 2:594363/1‑301 (MQ=255) tGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCCGTGAGGTTTACTTCCCGCCGGAAATAGCCCAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAACACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGAAGGCTGTGGCAACACCTCCCATTTAATTCGATAAGCCCAGGATAAgactcct > 1:329994/1‑295 (MQ=255) gAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCAAAGGATAAGCATGCTc > 2:131187/1‑301 (MQ=255) aaGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTCATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCCCCCATTTAATTCGATAAGCGCAgaaatcggaagagcg > 1:300279/1‑287 (MQ=255) gggTTACGGGCAGGAATGTCGTTACGCTCATGATGAAGCAACCTCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACTGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAAt < 1:96260/301‑1 (MQ=255) ggCTACGGTCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCCGTGAGGTTTACTTCCCGCCGGAAATAGCCCAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATc < 2:330399/301‑1 (MQ=255) cGGGCATGAATATCGTTACGCTCTTGATGAAGCAAACGCTTATGCTGCCTGTTAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAACCAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATctgctg < 1:214552/301‑1 (MQ=255) aaGGAATATCGTTACGCTAATGATGAAGCAAACTCTTAGGCGTCCGGTGAGGTTTACTTCCCTCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGATGTTACTGTAT‑CCGTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTa < 1:328087/300‑1 (MQ=255) tatCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGc > 2:378260/1‑301 (MQ=255) tCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCGACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTCATTCGATCAGCCAAGGAAAAGCATGCTCGATCCAAATCTGCTGCGTAATGAGACAAACGctagc > 1:623101/1‑297 (MQ=255) gatgaAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGACCGATACCAATCTGCTGCGTAATGAGCCAGAAGCAGTccccg > 1:267787/1‑297 (MQ=255) cAAACGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAACAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATACCAATCTGCTGCGTAATGAGCCAGACGCAGACGCTGAAAAACt > 1:439762/1‑301 (MQ=255) aaaCGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTAAATGTTATCGTTGCGGTAATGTTGTTACCGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGAGTAATGAGCCAGAAGCAATCGCTGAAAAAccg > 1:263496/1‑299 (MQ=255) tgcCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGc < 2:559318/301‑1 (MQ=255) tttACTTCCCGACGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTGCCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGa < 2:443789/301‑1 (MQ=255) tcTTCCCGCCGGAAATAGCACAAACACGTTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGt < 2:440326/300‑1 (MQ=255) cctttccctacaggacgctcttccgatcTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTa < 1:533662/274‑1 (MQ=255) ttCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTACTGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATAAGCCAGACGCAGTCGACGAAAAACTGGCACGCCGGGGCTTTAACAGGGATGTAg > 1:548798/1‑301 (MQ=255) ccgGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGc < 2:561767/301‑1 (MQ=255) aacaAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGctct < 1:278590/300‑1 (MQ=255) attattTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTaagatcggaagagcacacgtctgaactcca > 2:534335/1‑272 (MQ=255) tCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCAAGCAGGGACTTTAAGATGGAAGTAGAAAAACAGGGCGATCTTGAAGAACGTCGAAAAGt > 1:360664/1‑301 (MQ=255) aaaaCAGGTGCCTTGAAGGTAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAACACGCTACCGTTAAGGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTCGTAAAGTATTGCa < 1:593602/300‑1 (MQ=255) aaaCAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCACTTGAAGAGCGTCGTAAAGTAATTCAg > 1:215183/1‑301 (MQ=255) aGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATTGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTCGTAAAGTATTGCAGGTCAAAACGGAAAAc > 1:42380/1‑301 (MQ=255) aaGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTCGTAAAGTATTGCAGGTCAAAACGGAAAACCTGc < 2:215426/301‑1 (MQ=255) aGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATTGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTCGTAAAGTATTGCAGGTCAAAACGGAAAACCTGCa < 2:42433/301‑1 (MQ=255) cGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTCGTAAAGTATTGCAGGTCAAAACGGAAAAACTGCAAGCGGaa > 2:412686/1‑300 (MQ=255) aaaaGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATATAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTCGTAAAGTATTGCAGGttttccgttttgacctgcaatactttac < 2:623960/301‑28 (MQ=255) tggctgAACAGGTTCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTCGTAAAGTATTGCAGGTCAAAACGGAAAACCTGCAAGCGGAGCGTAACTCCCGATCGaa < 2:42847/301‑1 (MQ=255) gctgAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTCGTAAAGTATTGCAGGTCAAAACGGAAAACCTGCAAGCGGAGCGTAACTCCCGATCGaaaa > 2:361067/1‑300 (MQ=255) aaCGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTAGTAAAGTATTGCAGGTCAAAACGGAAAACCTGCAAGCGGAGCGTAACTCCCGATCGAAATCCATTGGCCAGGCGAAAGCGCGCGGGGa < 2:439741/301‑1 (MQ=255) ggttccGTTAATGTTTTCGTTGCGGTAATGTTGTT‑CTTTGTGTCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTCGTAAAGTATTGCAGGTCAAAACGGAAAACCTGCAAGCGGAGCGTAACTCCCGATCGAAATCCATTGGCCAGGCGAAAGCGCGCGGGGAAGa < 1:131062/297‑1 (MQ=255) tACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTCGTAAAGTATTGCAGGTCAAAACGGAAAACCAGCAAGCGGAGCGGAACTCCCGAACGAAAACCATTGGCCAGGCGAAAGCGCGCGGGGaacaat > 1:97373/1‑297 (MQ=255) cGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTCGTAAAGTATTGCAGGTCAAAACGGAAAACCTGCAAGCGGAGCGTAACTCCCGATCGAAATCCATTGGCCAGGCGAAAGCGCGCGGGGAAGATATCg > 2:578246/1‑301 (MQ=255) aaTGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTCGTAAAGTATTGCAGGTCAAAACGGAAAACCTGCAAGCGGAGCGTAACTCCCGAACGAAATCCACAGGCCAGGCGAAAGCGCGCGGGGAAGATATccacac > 1:78190/1‑296 (MQ=255) ttATCGTTGCGGTAATGTTGTTATTGTAT‑CCCTTTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTCGTAAAGTATTGCAGGTCAAAACGGAAAACCTGCAAGCGGAGCGTAACTCCCGATCGAAATCCATTGGCCAGGCGAAAGCGCGCGGGGAAGATATCGAGCCTTTa < 2:268055/301‑1 (MQ=255) ttATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTCGTAAAGTATTGCAGGTCAAAACGGAAAACCTGCAAGCGGAGCGTAACTCCCGATCGAAATCCATTGGCCAGGCGAAAGCGCGCGGGGAAGATATCGAGCCTTTa < 2:97497/301‑1 (MQ=255) ggTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTCGTAAAGTATTGCAGGTCAAAACGGAAAACCTGCAAGCGGAGCGTAACTCCCGATCGAAATCCATTGGCCAGGCGAAAGCGCGCGGGGAAGATATCGAGCCTTTACGTCTGGAAg < 2:623573/301‑1 (MQ=255) ttaTGTTGTTACTGTTT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTCGTAAAGTATTGCAGGTCAAAACGGAAAACCTGCAAGCGGAGCGTAACTCCCGATCGAAATCCATTGGCCAGGCGAAAGCGCGCGGGGAAGATATCGAGCCTTTACGTCTGGAAGTg < 1:305514/299‑1 (MQ=255) aTGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTCGTAAAGTATTGCAGGTCAAAACGGAAAACCTGCAAGCGGAGCGTAACTCCCGATCGAAATCCATTGGCCAGGCGAAAGCGCGCGGGGAAGATATCAAGCCTTTACGTCTGGAAGTGaa > 2:305918/1‑301 (MQ=255) tACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGACGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGAGTCGTAAAGTATTGCAGGTCAAAACGGAAACACTGCAAGCGGAGCGTAACTCCCGATCGAAATACATTGGCCAGGCGAAAACGCGCGGGGAAGATCACGACCCTTACAGGATGGAAGTGAACAAAATg > 1:429589/1‑301 (MQ=255) gttggccttgggTGGCAGGGTGTGGCCAAATGTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTCGTAAAGTATTGCAGGTCAAAACGGAAAACCTGCAAGCGGAGCGTAACTCCCGATCGAAATCCATTGGCCAGGCGAAAGCGCGCGGGGAAGATATCGAGCCTTTACGTCTGGAAGTGAACAAACTGGGCg < 1:377764/291‑1 (MQ=255) | ACGCCCGGATTATGACGTGCCGGTTCATTTGCGTAATGCGCCGACGAAATTAATGAAGGAAATGGGCTACGGGCAGGAATATCGTTACGCTCATGATGAAGCAAACGCTTATGCTGCCGGTGAGGTTTACTTCCCGCCGGAAATAGCACAAACACGCTATTATTTCCCGACAAACAGGGGCCTTGAAGGCAAGATTGGCGAAAAGCTCGCCTGGCTGGCTGAACAGGATCAAAATAGCCCCATAAAACGCTACCGTTAATGTTATCGTTGCGGTAATGTTGTTACTGTAT‑CCCTGTGGTCGCAGGCTGTGGCCACATCTCCCATTTAATTCGATAAGCACAGGATAAGCATGCTCGATCCCAATCTGCTGCGTAATGAGCCAGACGCAGTCGCTGAAAAACTGGCACGCCGGGGCTTTAAGCTGGATGTAGATAAGCTGGGCGCTCTTGAAGAGCGTCGTAAAGTATTGCAGGTCAAAACGGAAAACCTGCAAGCGGAGCGTAACTCCCGATCGAAATCCATTGGCCAGGCGAAAGCGCGCGGGGAAGATATCGAGCCTTTACGTCTGGAAGTGAACAAACTGGGCG > NC_000913/939079‑939665 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |