mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,756,564 | 0 | T | A | 21.4% | 47.3 / 12.0 | 28 | intergenic (‑53/+112) | aldB/yiaY | aldehyde dehydrogenase B/L‑threonine dehydrogenase |
| * | NC_000913 | 3,756,565 | 0 | C | T | 21.4% | 46.8 / 11.4 | 28 | intergenic (‑54/+111) | aldB/yiaY | aldehyde dehydrogenase B/L‑threonine dehydrogenase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 36 (1.310) | 4 (0.150) | 4/580 | 3.0 | 11.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 28 (1.050) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 3986614 | 38 (1.390) | 3 (0.110) | 3/576 | 3.4 | 7.4% | intergenic (‑607/+72) | aslA/hemY | putative Ser‑type periplasmic non‑aryl sulfatase/putative protoheme IX synthesis protein |
| ? | NC_000913 | = 3986622 | 38 (1.440) | intergenic (‑615/+64) | aslA/hemY | putative Ser‑type periplasmic non‑aryl sulfatase/putative protoheme IX synthesis protein | |||||
| * | ? | NC_000913 | 2900520 = | 37 (1.350) | 3 (0.110) | 3/576 | 3.4 | 8.3% | intergenic (‑247/‑72) | ygcW/yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein |
| ? | NC_000913 | 2900560 = | 31 (1.170) | intergenic (‑287/‑32) | ygcW/yqcE | putative SDR family oxidoreductase/putative MFS transporter, inner membrane protein | |||||
| * | ? | NC_000913 | 2564404 = | 23 (0.840) | 3 (0.110) | 3/584 | 3.4 | 11.4% | intergenic (+32/‑119) | yffR/yffS | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| ? | NC_000913 | 2564423 = | 24 (0.900) | intergenic (+51/‑100) | yffR/yffS | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | 1030584 = | 32 (1.170) | 3 (0.110) | 3/584 | 3.4 | 8.9% | coding (85/330 nt) | tusE | mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase |
| ? | NC_000913 | 1030610 = | 30 (1.120) | coding (59/330 nt) | tusE | mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase | |||||
| * | ? | NC_000913 | = 968289 | 34 (1.240) | 3 (0.110) | 3/598 | 3.5 | 7.3% | coding (1669/1749 nt) | msbA | lipid ABC transporter permease/ATPase |
| ? | NC_000913 | 1595983 = | 42 (1.530) | pseudogene (2005/3861 nt) | yneO | pseudogene, AidA homolog | |||||