Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_000913	1,634,435	0	C→A	100.0%	‑0.5	1	A151S (GCA→TCA)	tfaQ	Qin prophage; putative tail fibre assembly protein
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (0/0):  ref base (1/0):  total (1/0)

CTGCAGCATCCTGAAGCGGCGCAATATGCTCACTGGCTACCTGCATCAGGTTGTTTTTTGTTTCTTCCGCCTCCCGGATCCGGAACAGTTTTTCTGCTTCCGTATCCTTCACCCAGGCTGTGCCGTTCCACT  >  NC_000913/1634432‑1634563    |                                                                                                                                 cTGCAGCATCCTGAAGCCGCGCAATATCCTCACTGGCTACCTCCCCCAGCCTGTTTTTTGCTTCTTCCCCCTCCCGGCTCCGGACCAGCCTTTCTGCTTCCGTATCCTTCACCCCCCCTGCCCCGCTCCACt  >  3:481347/1‑132 (MQ=0)    |                                                                                                                                 CTGCAGCATCCTGAAGCGGCGCAATATGCTCACTGGCTACCTGCATCAGGTTGTTTTTTGTTTCTTCCGCCTCCCGGATCCGGAACAGTTTTTCTGCTTCCGTATCCTTCACCCAGGCTGTGCCGTTCCACT  >  NC_000913/1634432‑1634563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.