Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0009133,781,1520A→G13.7% 25.1 ‑41.5 ‑0.0183intergenic (+135/‑63)lldD/trmLL‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
Rejected: Prediction has biased read strand distribution supporting polymorphism.
Reads supporting (aligned to +/- strand):  new base (3/22):  ref base (149/8):  total (152/31)
Fisher's exact test strand distribution p-value = 9.30e-19
Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 9.98e-01

Only 100 of 183 total aligned reads displayed.

GGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGTCTGCATATCATCGAACCGATGGGATTTGCCTGGGACGATAAGCGCCTG  >  NC_000913/3780963‑3781346
                                                                                                                                                                                                 |                                                                                                                                                                                                     
 ggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGc                                                                                                                                                                                         >  1:872972/1‑200 (MQ=255)
                     aCTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTTTCCCTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTc                                                                                                                                                                     >  1:554384/1‑200 (MQ=255)
                                           aaTGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAggg                                                                                                                                                                                                    <  4:816554/150‑1 (MQ=255)
                                                 gCATAGTCGTTTGCGCCCCCTCACCCTAACCCTACCCCTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAg                                                                                                                                                                                           <  4:475047/150‑1 (MQ=255)
                                                   aTAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGc                                                                                                                                                                                         <  4:186964/150‑1 (MQ=255)
                                                          tttGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTTCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                                                                                                                                >  1:561975/1‑200 (MQ=255)
                                                          tttGCCCCCCCTCACCCTAACCCTCTCCCTCAGGGGGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAg                                                                                                                                                                                           <  2:413448/141‑1 (MQ=255)
                                                             gcgcCCCCTCGCCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAggg                                                                                                                                                                                                    <  3:510277/132‑1 (MQ=255)
                                                                  cccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑aaaa                                                                                                                                                                                            >  3:720761/1‑132 (MQ=255)
                                                                  cccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACt                                                                                                                                                                                   >  2:262987/1‑141 (MQ=255)
                                                                  cccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCaa                                                                                                                                                                          >  4:671528/1‑150 (MQ=255)
                                                                        cccTAACCCTCTCCCTCCGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCt                                                                                                                                                                    >  4:509388/1‑150 (MQ=255)
                                                                        cccTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAg                                                                                                                                                                                           >  2:709305/1‑127 (MQ=255)
                                                                        cccTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCAc                                                                                                                                                                             >  2:878205/1‑141 (MQ=255)
                                                                        cccTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCt                                                                                                                                                                    >  4:419468/1‑150 (MQ=255)
                                                                        cccTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTAACCAATTTTCTGCTATCCTGCCCCCGCACTACGGGGGCAGTATGCTAAACATCGTACTTTa                                                                                                                  >  1:649353/1‑200 (MQ=255)
                                                                        cccTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGGGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCt                                                                                                                                                                    >  4:29618/1‑150 (MQ=255)
                                                                              cccTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAAttt                                                                                                                                                                       >  2:507120/1‑141 (MQ=255)
                                                                                  ctcCCTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACCTCGTACTTTACGAACCAGaa                                                                                                        >  1:493435/1‑200 (MQ=255)
                                                                                  ctcCCTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCCCC‑GGGGAGAGGGCC‑GGGGAGAGGG‑‑G‑AAAAGGCCGCACTGCTCAcc                                                                                                                                                                            >  3:859488/1‑132 (MQ=255)
                                                                                    cccTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGCGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCaa                                                                                                                                                                          >  3:806949/1‑132 (MQ=255)
                                                                                    cccTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCaa                                                                                                                                                                          >  3:900817/1‑132 (MQ=255)
                                                                                    cccTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCaa                                                                                                                                                                          >  3:705214/1‑132 (MQ=255)
                                                                                    cccTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCt                                                                                                                                                                 >  2:425742/1‑141 (MQ=255)
                                                                                    cccTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc                                                                                                                                                        >  4:231991/1‑150 (MQ=255)
                                                                                    cccTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc                                                                                                                                                        >  4:559288/1‑150 (MQ=255)
                                                                                    cccTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAAt                                                                                                      >  1:463962/1‑200 (MQ=255)
                                                                                    cccTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑‑CCTCGCCCCCCC‑GGGGGGAGGGCC‑GGGGTGGGGG‑‑G‑AAAAGGCCGCACTGCCCACCAATTTTCTGCTATTCTGCCCCCGCACCAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAAtt                                                                                                     >  1:536848/1‑200 (MQ=255)
                                                                                      cTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCaa                                                                                                                                                                          >  1:350859/1‑130 (MQ=255)
                                                                                      cTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTAt                                                                                                                                                               >  2:863290/1‑141 (MQ=255)
                                                                                        cAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAAtttt                                                                                                                                                                      >  3:340070/1‑132 (MQ=255)
                                                                                          gggAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGcc                                                                                                >  1:750615/1‑200 (MQ=255)
                                                                                          gggAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGcc                                                                                                >  1:304349/1‑200 (MQ=255)
                                                                                            gagaGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTa                                                                                                                                                >  4:732873/1‑150 (MQ=255)
                                                                                            gagaGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCCCACCAATCTTCTGc                                                                                                                                                                  >  3:381697/1‑132 (MQ=255)
                                                                                                  ggACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCC‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGCGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg                                                                                                                                          >  4:913627/1‑150 (MQ=255)
                                                                                                    ccctgttggCGCTGTTATGCCCCCCCCCCCTCTAAAACGCCCCCCCCCT‑TTTTTTTCC‑CCCCCCCCCCCCG‑GGGGGGGGGGCG‑GGGGGGGGGG‑‑GAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                                                                                                                                  <  2:780763/134‑1 (MQ=255)
                                                                                                       gTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc                                                                                                                                                       >  3:579497/1‑132 (MQ=255)
                                                                                                       gTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg                                                                                                                                              >  2:902472/1‑141 (MQ=255)
                                                                                                            gcgcTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTc                                                                                                                                                                     >  1:56379/1‑113 (MQ=255)
                                                                                                            gcgcTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCCCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                                                                                                                                  >  3:395292/1‑132 (MQ=255)
                                                                                                               cTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGt                                                                                                                                      >  2:308/1‑141 (MQ=255)
                                                                                                                 g‑tatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCTCGCACTAAgg                                                                                                                                             >  3:613044/1‑132 (MQ=255)
                                                                                                                 g‑tatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                                                                                                                                             >  3:473230/1‑132 (MQ=255)
                                                                                                                 g‑tatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                                                                                                                                             >  3:558269/1‑132 (MQ=255)
                                                                                                                 g‑tatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                                                                                                                                             >  3:751203/1‑132 (MQ=255)
                                                                                                                 g‑tatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                                                                                                                                             >  3:341875/1‑132 (MQ=255)
                                                                                                                 g‑tatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                                                                                                                                             >  3:252739/1‑132 (MQ=255)
                                                                                                                 g‑tatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                                                                                                                                             >  3:88454/1‑132 (MQ=255)
                                                                                                                 g‑tatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                                                                                                                                             >  3:209936/1‑132 (MQ=255)
                                                                                                                 g‑tatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt                                                                                                                                    >  2:352211/1‑141 (MQ=255)
                                                                                                                 g‑tatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt                                                                                                                                    >  2:182597/1‑141 (MQ=255)
                                                                                                                 g‑tatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt                                                                                                                                    >  2:496092/1‑141 (MQ=255)
                                                                                                                 g‑tatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACAt                                                                                                                           >  4:760324/1‑150 (MQ=255)
                                                                                                                 g‑tatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTGCGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTc                                                                         >  1:393358/1‑200 (MQ=255)
                                                                                                                 g‑tatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTc                                                                         >  1:471406/1‑200 (MQ=255)
                                                                                                                 g‑tatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTACGCCACATACTGGCAACATCATCCGTc                                                                         >  1:384041/1‑200 (MQ=255)
                                                                                                                    atgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgggg                                                                                                                                           >  3:886309/1‑132 (MQ=255)
                                                                                                                    atgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                                                                                                                                  >  4:439863/1‑141 (MQ=255)
                                                                                                                    atgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCtt                                                                       >  1:181117/1‑200 (MQ=255)
                                                                                                                    atgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCtt                                                                       >  1:588977/1‑200 (MQ=255)
                                                                                                                       taCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa                                                                                                                               >  2:718748/1‑141 (MQ=255)
                                                                                                                         cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGt                                                                                                                                      >  3:849766/1‑132 (MQ=255)
                                                                                                                         cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTgcgc                                                                  >  1:101788/1‑200 (MQ=255)
                                                                                                                           cccTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACAt                                                                                                                           >  2:469485/1‑141 (MQ=255)
                                                                                                                           cccTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa                                                                                                                  >  4:468735/1‑150 (MQ=255)
                                                                                                                           cccTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa                                                                                                                  >  4:527815/1‑150 (MQ=255)
                                                                                                                           cccTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa                                                                                                                  >  4:804732/1‑150 (MQ=255)
                                                                                                                           cccTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTa                                                                >  1:221075/1‑200 (MQ=255)
                                                                                                                                 ctctGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATcc                                                                                                                                                             >  3:276675/1‑101 (MQ=255)
                                                                                                                                 ctctGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACt                                                                                                                     >  2:200602/1‑141 (MQ=255)
                                                                                                                                 ctctGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACt                                                                                                                     >  2:152238/1‑141 (MQ=255)
                                                                                                                                 ctctGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCg                                                          >  1:136540/1‑200 (MQ=255)
                                                                                                                                 ctctGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCg                                                          >  1:678745/1‑200 (MQ=255)
                                                                                                                                  gcggAACCGACGCCGCGCTTTTTTTTCCC‑CCCTC‑CCCCCCG‑GGGGGGGGGGCCGGGGGGGAGGG‑‑A‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAAc                                                                                                                             <  3:687407/129‑1 (MQ=255)
                                                                                                                                    ggAAACGACCCGGAACTCTTTTTGCCC‑CCCGGGCCCACCG‑GGGGAGGGGCCG‑GGGGGGGGGG‑‑G‑AAAAGGCCGAACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACAt                                                                                                                           <  3:81561/131‑1 (MQ=255)
                                                                                                                                     gAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGaa                                                                                                        >  4:105537/1‑150 (MQ=255)
                                                                                                                                           acacCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGTTGCACTGCTCACCAATTTTCTGCTATTCTGCTCTCGTACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCa                                                                                                           >  2:450036/1‑141 (MQ=255)
                                                                                                                                           acacCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACtt                                                                                                                    >  3:571526/1‑132 (MQ=255)
                                                                                                                                                cgtcactTTTTTTCTCCCCACCCCCCCCCAGGGGGGGGGACG‑GGGGTGGGGG‑‑A‑TAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc                                                                                                                 <  3:16150/127‑1 (MQ=255)
                                                                                                                                                     ctTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTg                                                                                        >  4:345437/1‑150 (MQ=255)
                                                                                                                                                     ctTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGTCTGCATatcatc                                      >  1:821328/1‑200 (MQ=255)
                                                                                                                                                     ctTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGTCTGCATatcatc                                      >  1:778056/1‑200 (MQ=255)
                                                                                                                                                     ctTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGTCTGCATatcatc                                      >  1:442461/1‑200 (MQ=255)
                                                                                                                                                     ctTTTTTTCT‑CCCTCGCCCCCCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAATGCCGCACTGCTCACCAATTCTCTGCTATCCTGCCCCCGCACTAAGGGGTCAGTATGCTAAACATCGTACTTTACGAACCAg                                                                                                          >  3:112684/1‑132 (MQ=255)
                                                                                                                                                      tttttttCC‑CCCCCCCCCCCCT‑GGGGAGAGGGGG‑AGGGTGTGGGGAG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGTCTGCATatcat                                       <  1:922847/200‑1 (MQ=255)
                                                                                                                                                                cccTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGTCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGcc                                                                                                >  3:33244/1‑132 (MQ=255)
                                                                                                                                                                cccTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGTCTGCATATCATCGAACCGATgg                            >  1:341665/1‑200 (MQ=255)
                                                                                                                                                                 ccTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCa                                                                                               >  3:428832/1‑132 (MQ=255)
                                                                                                                                                                   cccccccCCC‑GGGGGGGGGGCCGGGGGTGGGGG‑‑A‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCa                                                                                     <  2:246934/138‑1 (MQ=255)
                                                                                                                                                                    cGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGt                                                                          >  4:575936/1‑150 (MQ=255)
                                                                                                                                                                        ccTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCGAATACTGGCAAcatca                                                                               >  2:531999/1‑141 (MQ=255)
                                                                                                                                                                         ccgcgggggGGGGGGCG‑GGGGTGGGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGTCTGCATATCATCGAACCGATGGGATTTGcc                    <  1:91366/195‑1 (MQ=255)
                                                                                                                                                                                 gagaGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCtt                                                                       >  2:635274/1‑141 (MQ=255)
                                                                                                                                                                                   gagGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATAc                                                            >  4:37053/1‑150 (MQ=255)
                                                                                                                                                                                     gggCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGACATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTCATACCg                                                          >  4:864926/1‑150 (MQ=255)
                                                                                                                                                                                     gggCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTgcg                                                                   >  2:551345/1‑141 (MQ=255)
                                                                                                                                                                                     gggCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTACCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATcc                                                                            >  3:658883/1‑132 (MQ=255)
                                                                                                                                                                                            gggTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGTCTGCATATCATCGAACCGATGGGATTTGCCTGGGACGATAAGCGCCTg  >  1:112625/1‑200 (MQ=255)
                                                                                                                                                                                                gAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGTCTGCATATCATCGAACCGATGGGATTTGCCTGGGACGATAAGCGcc    >  1:266772/1‑194 (MQ=255)
                                                                                                                                                                                                 |                                                                                                                                                                                                     
GGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTG‑TATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCT‑CCCTCGCCCCTCC‑GGGGAGAGGGCC‑GGGGTGAGGG‑‑G‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCGCCAAATACTGGCAACATCATCCGTCTTTGCGCTAATACCGGCTTTCGTCTGCATATCATCGAACCGATGGGATTTGCCTGGGACGATAAGCGCCTG  >  NC_000913/3780963‑3781346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.