New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3739543	109 (0.970)	4 (0.040)	4/286	11.8	3.8%	intergenic (+16/‑162)	malS/avtA	alpha‑amylase/valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase
	?	NC_000913	= 3739556	103 (0.980)					intergenic (+29/‑149)	malS/avtA	alpha‑amylase/valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase
Rejected: Position hash score below cutoff.

TGAACTGGCAGGATGTTAGCGGTAAATCTGCCGCCAGCGTCGCGCACTGGCAGAAAATCAGCCAGTTCCGCGCCCGCCATCCCGCAATTGGCGCGGGCAAACAAACGACACTTTTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3739337‑3739543 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcttcccgAGGTACTGACGAACGGGAAGCCGGAAAAGTTACTGTTGCCCTGCCCAGACGACCAGCACTTTATCGTCGCCATGCTCACGAACAAAGCCGTAGCCCTGCTTCAGCAAAAGTGTCGTTTGTTTGCCCGCGCCAATTGCGGGATGGCGGGCGCGGAACTGGCTGATTTTCTGCCAGTGCGCGACGCTGGCGGCAGATTT  <  NC_000913/3739556‑3739360                                                                                                                                                                                                                                                                                                                                                                                                                      TGAACTGGCAGGATGTTAGCGGTAAATCTGCCGCCAGCGTCGCGCACTGGCAGAAAATCAGCCAGTTCCGCGCCCGCCATCCCGCAATTGGCGCGGGCAAACAAACGACACTTTTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGG                                                                                                                                                                                                              >  4:935263/1‑200       GGCAGGATGTTAGCGGTAAATCTGCCGCCAGCGTCGCGCACTGGCAGAAAATCAGCCAGTTCCGCGCCCGCCATCCCGCAATTGGCGCGGGCAAACAAACGACACTTTTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCC                                                                                                                                                                                                        >  4:454262/1‑200       GGCAGGATGTTAGCGGTAAATCTGCCGCCAGCGTCGCGCACTGGCAGAAAATCAGCCAGTTCCGCGCCCGCCATCCCGCAATTGGCGCGGGCAAACAAACGACACTTTTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCC                                                                                                                                                                                                        >  4:787833/1‑200                                                            AGCCGGTTCCGCGCCCGCCATCCCGCAATTGGCGCGGGCAAACAAACGGCACTATTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGATAAAGTACTGGTCGTCTAGGCAGGGCAACAGTAACTTTTCCGG                                                                                                                                                                                                              <  1:87409/141‑1                                                            AGCCAGTTCCGCGCCCGCCATCCCGCAATTGGCGCGGGCAAACAAACGACACTTTTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGG                                                                                                                                                                                                              <  4:744787/141‑1                                                            AGCCAGTTCCGCGCCCGCCATCCCGCAATTGGCGCGGGCAAACAAACGACACTTTTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGAAACAGTAACTTTTCCGG                                                                                                                                                                                                              >  2:744729/1‑141                                                                                                                                     GCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGAGGTACTGCGGAACGGGAAGCCGAAAAAGTTACTGTTGCCCTGCCCAGACGACCAGC                                                                                                                                              >  3:21659/1‑132                                                                                                                                                                  GTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGAGGTACTGACGAACGGGAAGCCGGAAAAGTTACTGTTGCCCTGCCCAGACGACCAGCACTTTATCGTCGCCATGCTCACGAACAAAGCCGTAGCCCTGCTTCAG                                                                                               >  2:506114/1‑150                                                                                                                                                                          CGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGAGGTACTGACGAACGGGAAGCCGGAAAAGTTACTGTTGCCCTGCCCAGACGACCAGCACTTTATCGTCGCCATGCTCACGAACAAAGCCGTAGCCCTGCTTCAGCAAAAGTG                                                                                       >  2:384533/1‑150                                                                                                                                                                               GGGCAGGGCAACAGTAACTTTTCCGGCTTCCCGAGGTACTGACGAACGGGAAGCCGGAAAAGTTACTGTTGCCCTGCCCAGACGACCAGCACTTTATCGTCGCCATGCTCACGAACAAAGCCGTAGCCCTGC                                                                                                    >  3:88010/1‑132                                                                                                                                                                                                      CGGCTTCCCGAGGTACTGACGAACGGGAAGCCGGAAAAGTTACTGTTGCCCTGCCCAGACGACCAGCACTTTATCGTCGCCATGCTCACGAACAAAGCCGTAGCCCTGCTTCAGCAAAAGTGTCGTTTGTTTGCCCGCGCCAATTGCGGG                                                           <  2:951883/150‑1                                                                                                                                                                                                            CCCGAGGTACTGACGAACGGGAAGCCGGAAAAGTTACTGTTGCCCTGCCCAGACGACCAGCACTTTATCGTCGCCATTCTCACGAACAAAGCTGTAGCCCTGCTTCAGCAAAAGTGTCGTTTGTTTGCCCGCGCCAATTGCGGGATGGCG                                                     >  2:478813/1‑150                                                                                                                                                                                                             CCGAGGTACTGACGAACGGGAAGCCGGAAAAGTTACTGTTGCCCTGCCCAGACGACCAGCACTTTATCGTCGCCATGCTCACGAACAAAGCCGTAGCCCTGCTTCAGCAAAAGTGTCGTTTGTTTGCCCGCGCCAATTGCGGGATGGCGGGCGCGGAACTGGCTGATTTTCTGCCAGTGCGCGACGCTGGCGGCAGATTT  >  4:17903/1‑200                                                                                                                                                                                                                                                                                                                                                                                                                      TGAACTGGCAGGATGTTAGCGGTAAATCTGCCGCCAGCGTCGCGCACTGGCAGAAAATCAGCCAGTTCCGCGCCCGCCATCCCGCAATTGGCGCGGGCAAACAAACGACACTTTTGCTGAAGCAGGGCTACGGCTTTGTTCGTGAGCATGGCGACGATAAAGTGCTGGTCGTCTGGGCAGGGCAACAGTAACTTTTCCGGCTTCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3739337‑3739543 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcttcccgAGGTACTGACGAACGGGAAGCCGGAAAAGTTACTGTTGCCCTGCCCAGACGACCAGCACTTTATCGTCGCCATGCTCACGAACAAAGCCGTAGCCCTGCTTCAGCAAAAGTGTCGTTTGTTTGCCCGCGCCAATTGCGGGATGGCGGGCGCGGAACTGGCTGATTTTCTGCCAGTGCGCGACGCTGGCGGCAGATTT  <  NC_000913/3739556‑3739360

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.