Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503	1979278	776	56 [0]	[0] 57	insB1–insA	insB1, insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	55 (1.070)	50/584	0.0	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

GTTGAGGCCAACGCCCATAATGCGGGCTGTTGCCCGGCATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACAC  >  NC_000913/1978982‑1979579                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                             cccaaaattaccaaccttatttttatgcggtttcaccgcaccccgggatgtcgccgggaagccccggtaaaaaataattagcaatagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtata                                                                                                                                                                                                                                                                                                           <  2:424130‑M2/4‑1 (MQ=255)        aaaccaacataaaatttaagctgatgcaccgcaacccgtgatgtcgccgagaagccccggtaaaaaataattggcattagaatagttgcgataagctgcaataagcataaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATa                                                                                                                                                                                                                                                                                                    <  2:477898‑M2/11‑1 (MQ=255)          cccacctttaattttatgcgctttaaccggaccccgttgtgtcgcagggaaggccctgtaaaaaataattagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtaacgacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACt                                                                                                                                                                                                                                                                                                  <  2:309936‑M2/13‑1 (MQ=255)          accaactttatttttatgcggtttcaccgcaccccgtgatgtcgccgtgaagcccctgtaaaaaataattagccttagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACt                                                                                                                                                                                                                                                                                                  <  1:79403‑M2/13‑1 (MQ=255)                 ttatttttatgcggtttcaccggaccccgtgatgtctacgggaagccccggtaaaaaataattagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttt                                                                                                                                                                                                                                                                                           <  1:253458‑M2/20‑1 (MQ=255)                  tatttttatgcggtttcaccgcaccccgtgatgtcgccgggaagccccggtaaaaaataattagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggtggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAATGCATAgttttgtttt                                                                                                                                                                                                                                                                                          >  1:90212‑M2/281‑301 (MQ=255)                     ttttatgcggtttcaccgcaccccgttatgttgccgggaagccccggtaaaaaataattagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                                                                                                                                                                                                                                       <  1:491637‑M2/24‑1 (MQ=255)                                  caccgaaccccgtgatgtcgccgggaagccccggtaaaaaataattagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCt                                                                                                                                                                                                                                                                          <  2:101080‑M2/37‑1 (MQ=255)                                         ccccgtgatgtcgccgggaagccccggtaaaaaataattagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgagtgatgcagatcacacaaaacactcaattacttaaaataaatgTATAAGTCATACTTTTTTTTTGGTTGTATTTCACTCTGTTaaaa                                                                                                                                                                                                                                                                   >  2:414828‑M2/258‑301 (MQ=255)                                              tgatgtcgccgggaagccccggtaaaaaataattagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcttaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgcttttcaataatgcgtgatgcagaccacacaacacactcaattacttaacataaatgTATAAGTCATACTATTGTTTTCGGTGTATTTCAATCTGTTAAAAAGttt                                                                                                                                                                                                                                                              >  1:180976‑M2/253‑301 (MQ=255)                                                ctatcgcccggaagccccagtaaaaaataattatgatatgaatagttgcgataagctgcaagaagcataaccaccttttttgtttaatatgtccttacaaatataaatgggtctgtacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtttt                                                                                                                                                                                                                                                             <  2:432865‑M2/50‑1 (MQ=255)                                                   tcgccgggaagccccggtaaaaaataattagcattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg                                                                                                                                                                                                                                                          <  1:263361‑M2/53‑1 (MQ=255)                                                   tcgccgggaagccccggtaaaaaataattaacattagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtcgttacacttatctaagatttttccgaagtcgacgcgactgtactcgtcactacacgcacatacaacggaggggagctacgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg                                                                                                                                                                                                                                                          <  1:425063‑M2/53‑1 (MQ=255)                                                                       aaaaaaagtagcaatggaatagttgcgataagctgcanaaagcaaaacacccttattggtttaatatggccttcaaaatagaaatgggtctttacaattatctaagatttttcctaaatcgacggaactgtactcgtcactacacgcacatacgacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATg                                                                                                                                                                                                                                     <  2:77583‑M2/74‑1 (MQ=255)                                                                                   attagaatagttgcgataagctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgctgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATAATTTTGTTTTTGTTGTATTTTAACCTGTTCAAAAGTTTTTCGTTACGCTAGTAAGCAAAAATTAAAAAGGaataa                                                                                                                                                                                                                         >  2:391323‑M2/216‑301 (MQ=255)                                                                                                      gctgcaataagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaaaactcaattacttaacataactgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAATGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGATTGTTgcg                                                                                                                                                                                                       >  1:353646‑M2/197‑300 (MQ=255)                                                                                                             taagcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTACATCTGTTAAAATGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGTTGTTCCGCACAGCCa                                                                                                                                                                                               >  1:331641‑M2/190‑301 (MQ=255)                                                                                                               agcagaaccacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatagacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaaacctcaattacttaacataaatgTATAAGTAATACTTTTGTTATGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATAAAAATGGGATTTTGCGAacagtacaa                                                                                                                                                                                             >  2:338433‑M2/188‑297 (MQ=255)                                                                                                                     accacctttttggtttaatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACt                                                                                                                                                                                       <  1:391332‑M2/120‑1 (MQ=255)                                                                                                                                     aatatgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattactaaacataaatgAATAATTAATCCTTTTGTTTTGGTGGTCTTTCAATCAGTACAAAAGTTTTTCGCTACGATAGTCAGCAAATATGAAACAGGAATAATAGAAATGAGATGTAGGCCACATTAAAAATAAATAACCGTAAAAaatcaa                                                                                                                                                                       >  2:418180‑M2/166‑300 (MQ=255)                                                                                                                                         tgtccttacaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgatcttcaataatgcgtgatgcagatcacacaaaacacccaattaattaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGATACGCTAGCAAGCAAAAATGAAACAGGAATAATCAAAATGGAATGTTGCTCACAGTCAAAATAACTCACCGTAAATAATCATCTg                                                                                                                                                                    >  1:416170‑M2/162‑300 (MQ=255)                                                                                                                                                acaaatagaaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaat                                                                                                                                                            <  1:414837‑M2/147‑1 (MQ=255)                                                                                                                                                   acgtgtgctcttccgatctacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaataa                                                                                                                                                          <  1:517077‑M2/149‑1 (MQ=255)                                                                                                                                                   aatagaaatgggtccttacacttaactaagatttttcctaaatcgacgcgactgtactcgtcactacacgcacatacaacggaagggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAaataat                                                                                                                                                         <  2:90211‑M2/150‑1 (MQ=255)                                                                                                                                                             ggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgatcttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTAAAAATAACTCACAGTAAATAATCATATGCAATAAAAAATCACTTTAata                                                                                                                                               >  2:80888‑M2/142‑300 (MQ=255)                                                                                                                                                                   tacacttagctaagagttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttaaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGGCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATAc                                                                                                                                         <  1:421530‑M2/166‑1 (MQ=255)                                                                                                                                                                      acttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAACAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCaccgtaaataatcatctgctataaataaagatcggaagagcgtcgttt                                                                                                                                      >  2:517066‑M2/133‑281 (MQ=255)                                                                                                                                                                           tctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggagggctgcgattttaaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAg                                                                                                                                 <  1:418190‑M2/174‑1 (MQ=255)                                                                                                                                                                              aagatttttcctaaatcgacgcaaccgcactcgtcactacatgcacatacaacggaggggggctgcgattttcaataatgcgtgttgcagatcacacaaaacactcaattacttaacataaatgTATAAGGCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTCTTCGCTACGCTAGCAAGCAAAAATGAAATAGGAACAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGAAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCagctaagcta                                                                                                                              >  1:361068‑M2/125‑301 (MQ=255)                                                                                                                                                                                       cctaaatcaactaaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaactctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAAGACCAGATAAGCTATTTTTAAAc                                                                                                                     <  1:235631‑M2/186‑1 (MQ=255)                                                                                                                                                                                                    ctctgtccacgtaactaaacgcacatagaacggaggggggctgcgaatttcaataatgcgtgatgcagatcaaaaaaaacactgaaatacttaaaacaactgTATAAGTCATACTTTTGTTTTAGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGc                                                                                                        <  2:416161‑M2/199‑1 (MQ=255)                                                                                                                                                                                                       cacgaccacacttccgatctatgagaacggaggggggcttcgattttaaataatgagtgatacagataaaacaaaacactcaattacttaacataaatgTATAAATCATACTTTTGTGTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAACAAGCAAAAATGAAACAGGAATAATCTAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGcaca                                                                                                     <  2:472179‑M2/202‑1 (MQ=255)                                                                                                                                                                                                           ctcgtcactacacgctcatacaacggaggggggctgcgattttcaataatgcgtgatgcagaacacacaaaacactcaattacttaacataaatgTATAAGTCATATTTCTGTTTTGGTTGTATTTCAATCTGTTAAAAAGTTTTTCGTTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATATGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAAAAGACACTTACCGAAcaacaa                                                                                                 >  2:250824‑M2/96‑301 (MQ=255)                                                                                                                                                                                                              gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACaaa                                                                                                >  1:330251‑M2/93‑299 (MQ=255)                                                                                                                                                                                                                   tacacgcacatacaacggaggagggctgcgatcttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTa                                                                                         <  1:80889‑M2/214‑1 (MQ=255)                                                                                                                                                                                                                   aacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTa                                                                                         <  1:338440‑M2/214‑1 (MQ=255)                                                                                                                                                                                                                         cacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACa                                                                                   >  1:185600‑M2/82‑301 (MQ=255)                                                                                                                                                                                                                           catacaacggaggggggctgcgattttcaataatgcgtgctgcagatcacacaaaacacccaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGTACAGTTAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTTATGCACTACCAGATAAGCTatttttaaacataaatttaacgcatacgatcggaagagcacacgtt                                                                                 >  1:472189‑M2/80‑279 (MQ=255)                                                                                                                                                                                                                             tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACaaaga                                                                               >  1:287131‑M2/78‑301 (MQ=255)                                                                                                                                                                                                                                               aaaattacaattaagcgttaagcaaagcacaaaaaacactaaaatacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACtta                                                             <  2:331634‑M2/242‑1 (MQ=255)                                                                                                                                                                                                                                                    ttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATAAACttaatgtt                                                        >  2:397294‑M2/55‑301 (MQ=255)                                                                                                                                                                                                                                                     ctctttccctacacgacgctcttccgatctcactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGGTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACttaatgtta                                                       <  2:329180‑M2/248‑1 (MQ=255)                                                                                                                                                                                                                                                         taatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGAAACTTAACGCACAACAAAATAATTAAATACAAAAAAAGGCAACAATCAACTTAATGTTAATGa                                                   >  2:409769‑M2/50‑301 (MQ=255)                                                                                                                                                                                                                                                             gcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATg                                               >  1:397978‑M2/46‑301 (MQ=255)                                                                                                                                                                                                                                                                tgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGttt                                            >  1:499418‑M2/43‑301 (MQ=255)                                                                                                                                                                                                                                                                 aatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGtttt                                           <  1:397303‑M2/260‑1 (MQ=255)                                                                                                                                                                                                                                                                   tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTCTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGAACATTACCGCACAACAAACTAATTAAAACCAAAAAAAGACAACAATAACATTAATGTTAATGAAATTTTTtaa                                         >  2:387284‑M2/40‑300 (MQ=255)                                                                                                                                                                                                                                                                   cgacgctcttccgatctactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTACTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAc                                         <  2:221261‑M2/262‑1 (MQ=255)                                                                                                                                                                                                                                                                          cacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATAtt                                  >  1:363909‑M2/33‑301 (MQ=255)                                                                                                                                                                                                                                                                              caaaacactcaattacttaacataaatgTATAAGTCATACCTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAc                               >  1:192771‑M2/29‑300 (MQ=255)                                                                                                                                                                                                                                                                                   cactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGCCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAATAAACTAattaaatacaaagaaaggcaacaatcaacttaatgataagatcggaagagcacacgtctgaactccag                         >  1:329185‑M2/24‑272 (MQ=255)                                                                                                                                                                                                                                                                                   aactcaattactgaaaataaatgTATAAGTCATAATTTTGTTGTAAGTGTATTTCAATCTATTAAAAAATTTTTCGCTACGCTAGCAAGCAAAAATGAAACAAGAAAAATAGAAATGGGATATTACGCACAGTCAAAATAACTCAACGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTg                         <  2:361061‑M2/278‑1 (MQ=255)                                                                                                                                                                                                                                                                                    actcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTTAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATTCCAGATAAGCTATTTTTAAACAGACACTCACTGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATAAACTTAATGTTAATgaaatgttttacagatcggaagagcaca                         >  1:221264‑M2/23‑288 (MQ=255)                                                                                                                                                                                                                                                                                           tatttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGc                 <  2:22151‑M2/286‑1 (MQ=255)                                                                                                                                                                                                                                                                                                aacataaatgTATAAGTCATACTTTAGTTTTGGATGTATGTCAAACTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAGATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGgaga            <  2:180974‑M2/291‑1 (MQ=255)                                                                                                                                                                                                                                                                                                        tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGAAAAAATGAAACAGGAATGATCGAGATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTac    <  1:250827‑M2/299‑1 (MQ=255)                                                                                                                                                                                                                                                                                                          tataAGTCATACATTTGTTTTTGGTATATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTACGCACAGTCAAAATAACTCACCGTAAATAATCATCTACTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGTCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGAAGAATCAGTacac  <  2:397969/301‑1 (MQ=255)                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                             GTTGAGGCCAACGCCCATAATGCGGGCTGTTGCCCGGCATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACAC  >  NC_000913/1978982‑1979579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑