| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2021646 = | 72 (0.700) | 3 (0.030) | 3/288 | 12.3 | 4.0% | coding (143/366 nt) | fliO | flagellar biosynthesis protein |
| ? | NC_000913 | 2021683 = | 78 (0.810) | coding (180/366 nt) | fliO | flagellar biosynthesis protein | |||||
| Rejected: Position hash score below cutoff. | |||||||||||
TTAAGCAAATTTTTCATGACCGACTGAAAATCGGTCTGCGGTATCTCTTCCGTTGGTGCAGAAGGGGGAAGTTTATGCAGCAGATTGATTTGACCTGCGGTAACGCCGAGCACCAGCCGTGCATCTTCCACATCGACCACCACAACCCTTTCACGCGCGCCCAGTGAAGCACTGGCGCTAATTTTCAGACCGTTAACGCCAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2021850‑2021646‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccagtgcTTCACTGGGCGCGCGTGAAAGGGTTGTGGTGGTCGATGTGGAAGATGCACGGCTGGTGCTCGGCGTTACCGCAGGTCAAATCAATCTGCTGCATAAACTTCCCCCTTCTGCACCAACGGAAGAGATACCGCAGACCG > NC_000913/2021683‑2021819 TTAAGCAAATTTTTCATGACCGACTGAAAATCGGTCTGCGGTATCTCTTCCGTTGGTGCAGAAGGGGGAAGTTTATGCAGCAGATTGATTTGACCTGCGGTAACGCCGAGCACCAGCCGTGCATCTTCCACATCGACCACCACAACCCTTTCACGCGCGCCCAGTGAAGCACTGGCGCTAATTTTCAGACCGTTAACGCC < 4:275356/200‑1TTAAGCAAATTTTTCATGACCGACTGAAAATCGGTCTGCGGTATCTCTTCCGTTGGTGCAGAAGGGGGAAGTTTATGCAGCAGATTGATTTGACCTGCGGTAACGCCGAGCACCAGCCGTGCATCTTCCACATCGACCACCACAACCCTTTCACGCGCGCCCAGTGAAGCACTGGCGCTAATTTTCAGACCGTTAACGCC < 4:492884/200‑1TTAAGCAAATTTTTCATGACCGACTGAAAATCGGTCTGCGGTATCTCTTCCGTTGGTGCAGAAGGGGGAAGTTTATGCAGCAGATTGATTTGACCTGCGGTAACGCCGAGCACCAGCCGTGCATCTTCCACATCGACCACCACAACCCTTTCACGCGCGCCCAGTGAAGCACTGGCGCTAATTTTCAGACCGTTAACGCC < 4:714202/200‑1TTAAGCAAATTTTTCATGACCGACTGAAAATCGGTCTGCGGTATCTCTTCCGTTGGTGCAGAAGGGGGAAGTTTATGCAGCAGATTGATTTGACCTGCGGTAACGCCGAGCACCAGCCGTGCATCTTCCACATCGACCACCACAACCCTTTCACGCGCGCCCAGTGAAGCACTGGCGCTAATTTTCAGACCGTTAACGCC < 4:742008/200‑1 CGTTGGTGCAGAAGGGGGAAGTTTATGCAGCAGATTGATTTGACCTGCGGTAACGCCGAGCACCAGCCGTGCATCTTCCACATCGACCACCACAACCCTTTCACGCGCGCCCAGTGAAGCACTGGCGCTAATTTTCAGACCGTTAACGCC < 3:772915/150‑1 CGTTGGTGCAGAAGGGGGAAGTTTATGCAGCAGATTGAGTTGACCTGCGGTAACGCCGAGCACCAGCCGTGCATCTTCCACATCGACCACCACAACCCGTTCACGCGCGCGCAGTGAAGCACTGGCGCTAATTTTCAGACCGTTAACGCC < 3:492310/150‑1 TTGGTGCAGAAGGGGGAAGTTTATGCAGCAGATTGATTTGACCTGCGGTAACGCCGAGCACCAGCCGTGCATCTTCCACATCGACCACCACAACCCTTTCACGCGCGCCCAGTGAAGCACTGGCGCTAATTTTCAGACCGTTAACGCCAG > 3:763665/1‑150 AGGGGGAAGTTTATGCAGCAGATTGATTTGACCTGCGGTAACGCCGAGCACCAGCCGTGCATCTTCCACATCGACCACCACAACCCTTTCACGCGCGCCCAGTGAAGCACTGGCGCTAATTTTCAGACCGTTAACGCCAGT > 1:513018/1‑141 AAGTTTATGCAGCAGATTGATTTGACCTGCGGTAACGCCGAGCACCAGCCGTGCATCTTCCACATCGACCACCACAACCCTTTCACGCGCGCCCAGTGAAGCACTGGCGCTAATTTTCAGACCGTTAACGCC < 2:471521/132‑1 AAGTTTATGCAGCAGATTGATTTGACCTGCGGTAACGCCGAGCACCAGCCGTGCATCTTCCACATCGACCACCACAACCCTTTCACGCGCGCCCAGTGAAGCACTGGCGCTAATTTTCAGACCGTTAACGCC < 2:619168/132‑1 GTTTATGCAGCAGATTGATTTGACCTGCGGTAACGCCGAGCACCAGCCGTGCATCTTCCACATCGACCACCACAACCCTTTCACGCGCGCCCAGTGAAGCACTGGCGCTAATTTTCAGACCGTTAACGCCAG > 2:236533/1‑132 TGCGGTAACGCCGAGCACCAGCCGTGCATCTTCCACATCGACAACCACAACCCTTTCACGCGCGCCCAGTGAAGCACTGGCGCTAATTTTCAGACCGTTAACGCCAGTGCTTCACTGGGCGCGCGTGAAAGG < 2:662095/132‑1 CGTGCATCTTCCACATCGGCCACCACAACCCTTTCACGCGCGGCCAGTGAAGCACTGGCGCTAATTTTCAGACCGTTAACGCCAGTGCTTCACTGGGCGCGCGTGAAAGGGTTGTGGTGGTCGATGTGGAAG < 2:145465/132‑1 CCACCACAACCCTTTCACGCGCGCCCAGTGAAGCACTGGCGCTAATTTTCAGACCGTTAACGCCAGTGCTTCACTGGGCGCGCGTGAAAGGGTTGTGGTGGTCGATGTGGAAGATGCACGGCTGGTGCTCGGCGTTACCGC < 1:60650/141‑1 GTGCTTCACTGGGCGCGCGTGAAAGGGTTGTGGTGGTCGATGTGGAAGATGCACGGCTGGTGCTCGGCGTTACCGCAGGTCAAATCAATCTGCTGCATAAACTTCCCCCTTCTGCACCAACGGAAGAGATACCGCAGACCG > 1:643639/1‑141 GTGCTTCACTGGGCGCGCGTGAAAGGGTTGTGGTGGTCGATGTGGAAGATGCACGGCTGGTGCTCGGCGTTACCGCAGGTCAAATCAATCTGCTGCATAAACTTCCCCCTTCTGCACCAACGGAAGAGATAC < 2:245037/132‑1 TTAAGCAAATTTTTCATGACCGACTGAAAATCGGTCTGCGGTATCTCTTCCGTTGGTGCAGAAGGGGGAAGTTTATGCAGCAGATTGATTTGACCTGCGGTAACGCCGAGCACCAGCCGTGCATCTTCCACATCGACCACCACAACCCTTTCACGCGCGCCCAGTGAAGCACTGGCGCTAATTTTCAGACCGTTAACGCCAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2021850‑2021646‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccagtgcTTCACTGGGCGCGCGTGAAAGGGTTGTGGTGGTCGATGTGGAAGATGCACGGCTGGTGCTCGGCGTTACCGCAGGTCAAATCAATCTGCTGCATAAACTTCCCCCTTCTGCACCAACGGAAGAGATACCGCAGACCG > NC_000913/2021683‑2021819 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |