New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4028177	88 (0.860)	3 (0.030)	3/298	12.6	3.4%	coding (596/1164 nt)	fadA	3‑ketoacyl‑CoA thiolase (thiolase I)
	?	NC_000913	= 4028231	84 (0.840)					coding (542/1164 nt)	fadA	3‑ketoacyl‑CoA thiolase (thiolase I)
Rejected: Position hash score below cutoff.

CGAGCGCGCGGCTTAAGACCTAATTCATGGGCGCGGCTTTCACTCATCACCAGCATGGCAGCTGCGCCATCGGAAAGTGCAGAAGATGTGCCCGCCGTTACCATACCGTTTACTGGATCAAACGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4027976‑4028177 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcAGTCGGCCGCATTTAAAAATGAAATCATCCCGACCGGTGGTCACGATGCCGACGGCGTCCTGAAGCAGTTTAATTACGACGAAGTGATTCGCCCGGAAACCACCGTGGAAGCCCTCGCCACGCTGCGTCCGGCGTTTGAT  <  NC_000913/4028231‑4028092                                                                                                                                                                                                                                                                                                                                                        CGAGCGCGCGGCTTAAGACCTAATTCATGGGCGCGGCTTTCACTCATCACCAGCATGGCAGCTGCGCCATCGGAAAGTGCAGAAGATGTGCCCGCCGTTACCATACCGTTTACTGGATCAAACGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGAC                                                                                                                                                <  4:736714/200‑1                                                     GCATGGCAGCTGCGCCATCGGAAAGTGCAGAAGATGTGCCCGCCGTTACCATACCGTTTACTGGATCAAACGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGC                                                                                                                                              >  3:824593/1‑150                                                           cacCTGGGCCATCGGAAAGTGCAGAAGATGTGCCCGCCGTTACCATACCGTTTACTGGATCAAACGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGA                                                                                                                                                 <  1:261711/138‑1                                                           CAGCTGCGCCATCGGAAAGTGCAGAAGATGTGCCCGCCGTTACCATACCGTTTACTGGATCAAACGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGA                                                                                                                                                 >  1:29472/1‑141                                                            AGCTGCGCCATCGGAAAGTGCAGAAGATGTGCCCGCCGTTACCATACCGTTTACTGGATCAAACGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGAC                                                                                                                                                <  1:542659/141‑1                                                                    CATCGGAAAGTGCAGAATATTTGCCCGCCGTTACCATACCGTTTACTGGATCAAACGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGA                                                                                                                                                 <  2:631228/132‑1                                                                    CATCGGAAAGTGCAGAAGATGTGCCCGCCGTTACCATACCGTTTACTGGATCAAACGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGA                                                                                                                                                 <  2:588663/132‑1                                                                     ATCGGAAAGTGCAGAAGATGTGCCCGCCGTTACCATACCGTTTACTGGATCAAACGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGAC                                                                                                                                                >  2:111764/1‑132                                                                                                                                        GTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGCAGTCGGCCGCATTTAAAAATGAAATCATCCCGTCCGGTGGTCACGATGCCGACGGCGTCCTGCAGCAGTTTAATTACGACGAAGTGATTCGCCCGGAAACCACCGTGGAAGCCCTCGCCACGCTGCGTCCGGC         >  4:494187/1‑200                                                                                                                                                                     GCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGCAGTCGGCCGCATTTAAAAATGAAATCATCCCGACCGGTGGTCACGATGCCGACGGCGTCCTGAAGCAGTTTAATTACGACGAAGTGATTCGCCCGGAAACCAC                                       >  1:37859/1‑141                                                                                                                                                                               TCGTCGTAATTAAACTGCTTCAGGACGCAGTCGGCCGCATTTAAAAATGAAATCATCCCGACCGGTGGTCACGATGCCGACGGCGTCCTGAAGCAGTTTAATTACGACGAAGTGATTCGCCCGGAAACCACCGTGGAAGCC                             >  1:19059/1‑141                                                                                                                                                                                                          CAGTCGGCCGCATTTAAAAATGAAATCATCCCGACCGGTGGTCACGATGCCGACGGCGTCCTGAAGCAGTTTAATTACGACGAAGTGATTCGCCCGGAAACCACCGTGGAAGCCCTCGCCACGCTGCGTCCGGCGTTTGAT  >  1:486953/1‑141                                                                                                                                                                                                          CAGTCGGCCGCATTTAAAAATGAAATCATCCCGACCGGTGGTCACGATGCCGACGGCGTCCTGAAGCAGTTTAATTACGACGAAGTGATTCGCCCGGAAACCACCGTGGAAGCCCTCGCCACGCTGCGTCCGGCGTTTGAT  <  1:64807/141‑1                                                                                                                                                                                                                                                                                                                                                        CGAGCGCGCGGCTTAAGACCTAATTCATGGGCGCGGCTTTCACTCATCACCAGCATGGCAGCTGCGCCATCGGAAAGTGCAGAAGATGTGCCCGCCGTTACCATACCGTTTACTGGATCAAACGCCGGACGCAGCGTGGCGAGGGCTTCCACGGTGGTTTCCGGGCGAATCACTTCGTCGTAATTAAACTGCTTCAGGACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4027976‑4028177 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcAGTCGGCCGCATTTAAAAATGAAATCATCCCGACCGGTGGTCACGATGCCGACGGCGTCCTGAAGCAGTTTAATTACGACGAAGTGATTCGCCCGGAAACCACCGTGGAAGCCCTCGCCACGCTGCGTCCGGCGTTTGAT  <  NC_000913/4028231‑4028092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.