New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3856874 =	90 (1.120)	3 (0.040)	3/276	9.0	3.5%	intergenic (+10/+37)	yidI/yidJ	inner membrane protein/sulfatase/phosphatase superfamily protein
	?	NC_000913	3856909 =	83 (1.110)					intergenic (+45/+2)	yidI/yidJ	inner membrane protein/sulfatase/phosphatase superfamily protein
Rejected: Position hash score below cutoff.

GTTCCGCAGTTACCAATGGAGTCTGCGTCCGTGGCGTAAAGATGCACGGCCGCGCTGGATGGGGGCGTTTCGTCCACGTCCACAAGATGGCTATTCGCCAGTTGTACGCGACTATGACACCGGCCTACCGACACAAGGGGTGAAGGTGGAGGAGAAAAAACAGAAGTTCTGACGATAATGCCCGCTGATGATCACCCGGCGGGCATTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3857082‑3856874 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcattatCGTCAGAACTTCTGTTTTTTCTCCTCCACCTTCACCCCTTGTGTCGGTAGGCCGGTGTCATAGTCGCGTACAACTGGCGAATAGCCATCTTGTGGACGTGGACGAAACGCCCCCATCCAGCGCGGCCGTGCAT  >  NC_000913/3856909‑3857041                                                                                                                                                                                                                                                                                                                                                        GTTCCGCAGTTACCAATGGAGTCTGCGTCCGTGGCGTAAAGATGCACGGCCGCGCTGGATGGGGGCGTTTCGTCCACGTCCACAAGATGGCTATTCGCCAGTTGTACGCGACTATGACACCGGCCTACCGACACAAGGGGTGAAGGTGGAGGAGAAAAAACAGAAGTTCTGACGATAATGCCCGCTGATGATCACCCGGC                                                                                                                                                >  2:519393/1‑200                                                      GCTGGATGGGGGCGTTTCGTCCACGTCCACAAGATGGCTATTCGCCAGTTGTACGCGACTATGAAACCGGCCTACCGACACAAGGGGTGAAGGTGGAGGAGAAAAAACAGAAGTTCTGACGATAATGCCCGCTGATGATCACCCGGCGGG                                                                                                                                             <  4:467466/150‑1                                                         GGATGGGGGCGTTTCGTCCACGTCCACAAGATGGCTATTCGCCAGTTGTACGCGACTATGACACCGGCCTACCGACACAAGGGGTGAAGGTGGAGGAGAAAAAACAGAAGTTCTGACGATAATGCCCGCTGATGATCACCCGGCGGGCAT                                                                                                                                          >  4:171716/1‑150                                                          GATGGGGGCGTTTCGTCCACGTCCACAAGATGGCTATTCGCCAGTTGTACGCGACTATGACACCGGCCTACCGACACAAGGGGTGAAGGTGGAGGAGAAAAAACAGAAGTTCTGACGATAATGCCCGCTGATGATCACCCGGCGGGCATTATCGTCAGAACTTCTGTTTTTTCTCCTCCACCTTCACCCCTTGTGTCGGT                                                                                       <  2:361382/200‑1                                                            TGGGGGCGTTTCGTCCACGTCCACAAGATGGCTATTCGCCAGTTGTACGCGACTATGACACCGGCCTACCGACACAAGGGGTGAAGGTGGAGGAGAAAAAACAGAAGTTCTGACGATAATGCCCGCTGATGATCACCCGGCGGGCATTAT                                                                                                                                       <  4:219568/150‑1                                                                        GTCCACGTCCACAAGATGGCTATTCGCCAGTTGTACGCGACTATGACACCGGCCTACCGACACAAGGGGTGAAGGTGGAGGAGAAAAAACAGAAGTTCTGACGCTAATGCCCGCTGATGATCACCCTGCGGG                                                                                                                                             >  3:20101/1‑132                                                                             CGTCCACAAGATGGCTATTCGCCAGTTGTACGCGACTATGACACCGGCCTACCGACACAAGGGGTGAAGGTGGAGGAGAAAAAACAGAAGTTCTGACGATAATGCACGCTGATGATCACCCGGCGGGCATTA                                                                                                                                        >  3:1661/1‑132                                                                              gttCACAAGATGGCTATTCGCCAGTTGTACGCGACTATGACACCGGCCTACCGACACAAGGGGTGAAGGTGGAGGAGAAAAAACAGAAGTTCTGACGATAATGCCCGCTGATGATCACCCGGCGGGCATTAT                                                                                                                                       >  3:490780/4‑132                                                                                 CACAAGATGGCTATTCGCCAGTTGTACGCGATTATGACACCGGACTACCGACACAAGGGGTGAAGGTGGAGGAGAAAAAACAGAAGTTCTGACGATAATGCCCGCCGATGATCACCCGGCGGGCATTATCGTCAGAACTTCTGTTTTTTCTCCTCCACCTTCACCCCTTGTGTCGGTAGGCCGGTGTCATAGTCGCGTAC                                                                <  2:92026/200‑1                                                                                                         TACGCGACTATGACACCAGCCTACCGACACAAGGGGTGGAGGTGGAGGAGAAAAAACAGAAGTTCTGACGATGATGCCCGCTGATGATCACCCGTCGGGCATTATCGTCAGATCTTCTGTTTTTTCTCCTCCACCTTCACCCCTTGTGTC                                                                                          <  4:241161/150‑1                                                                                                                                                                                                          GGCATTATCGTCAGAACTTCTGTTTTTTCTCCTCCACCTTCACCCCTTGTGTCGGTAGGCCGGTGTCATAGTCGCGTACAACTGGCGAATAGCCATCTTGTGGACGTGGACGAAACGCCCCCATCCAGCGCGGCCGTGCAT  <  1:154720/141‑1                                                                                                                                                                                                                ATCGTCAGAACTTCTGTTTTTTCTCCTCCACCTTCACCCCTTGTGTCGGTAGGCCGGTGTCATAGTCGCGTACAACTGGCGAATAGCCATCTTGTGGACGTGGACGAAACGCCCCCATCCAGCGCGGACGTG     >  3:511832/1‑132                                                                                                                                                                                                                                                                                                                                                        GTTCCGCAGTTACCAATGGAGTCTGCGTCCGTGGCGTAAAGATGCACGGCCGCGCTGGATGGGGGCGTTTCGTCCACGTCCACAAGATGGCTATTCGCCAGTTGTACGCGACTATGACACCGGCCTACCGACACAAGGGGTGAAGGTGGAGGAGAAAAAACAGAAGTTCTGACGATAATGCCCGCTGATGATCACCCGGCGGGCATTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3857082‑3856874 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcattatCGTCAGAACTTCTGTTTTTTCTCCTCCACCTTCACCCCTTGTGTCGGTAGGCCGGTGTCATAGTCGCGTACAACTGGCGAATAGCCATCTTGTGGACGTGGACGAAACGCCCCCATCCAGCGCGGCCGTGCAT  >  NC_000913/3856909‑3857041

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.