Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP01681676,8780GT34.3% 2632.1 / 314.3 1501intergenic (‑127/+58)JCVSYN2_00300/JCVSYN2_00305UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (792/155);  new base T (9/485);  total (806/695)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1522 total aligned reads displayed.

TAATATCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAA  >  CP016816/76751‑77007
                                                                                                                               |                                                                                                                                      
    atCTCCTTAAAAATTTATATATATTAGTGAACGTAAGGATGTATTATTCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATTAAGATAAATTTTTTAAAGaaaa                                                                                                                                    >  2:3773485/1‑128 (MQ=255)
     tctcCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGaaaaa                                                                                                                                   <  2:3847445/128‑1 (MQ=255)
      ctcCTTAAAAATTTATATATAATAGTGAACTTAAGGATGTATAATACAAAATAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACAATATATAAAGATAAATTTTTTAAAGAAAAat                                                                                                                                  <  1:704891/128‑1 (MQ=255)
          ttAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCAAAATTCCACTTTAAATTCAAATAAAATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑a                                                                                                                             >  1:1227260/1‑128 (MQ=255)
           tAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑Ac                                                                                                                            >  1:2060328/1‑128 (MQ=255)
             aaaaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAACTTTTATAAAGAAAAATATT‑ACaa                                                                                                                          >  1:880972/1‑128 (MQ=255)
               aaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑t                                                                                                                    >  2:1894111/1‑128 (MQ=255)
               aaTTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAAAAAAATATT‑ACAA‑‑C‑‑t                                                                                                                    >  1:1848950/1‑128 (MQ=255)
                 tttATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑ttt                                                                                                                  >  1:3462592/1‑128 (MQ=255)
                 tttATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑ttt                                                                                                                  >  2:1675290/1‑128 (MQ=255)
                    atatatatTATGGAAATTAATGATTTAAAAAACAAATTTAAAATAAATTTAAAAACAAAATTCCCCTTTAAATTCAATTAACTTTATATAAACATTAATTTTTTAAATAAAAATTTT‑AAAA‑‑C‑‑tttttt                                                                                                               <  2:1394151/128‑1 (MQ=255)
                       tatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑ttttttttt                                                                                                            >  1:1725389/1‑128 (MQ=255)
                       tatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑ttttttttt                                                                                                            >  2:767559/1‑128 (MQ=255)
                       tatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑atttttttt                                                                                                            >  1:776575/1‑128 (MQ=255)
                       tatatTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTATAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑tttttttat                                                                                                            >  1:1003901/1‑126 (MQ=255)
                        attttattgtaattAATGATGTTTAATAAAAATTAATAATAACTGTACAACACAAAATCCCCTTTAAATTTAAATAAAATTATATAAATATAAAATTTTTAAATAAAAATATT‑ACAA‑‑A‑‑tttttttttt                                                                                                           <  2:3357026/116‑1 (MQ=255)
                        atatttttttaCTTAATGATTTATAAAACAAATTAATAAATAATGTACAACCCAAAATCCCCTTTAAATTCAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATATT‑ACAA‑‑A‑‑tttttttttt                                                                                                           <  2:1740363/118‑1 (MQ=255)
                                  aCTTAAGGATGTATAAAAAAAATTAATAATAAATGTACAAACAAAATTACCCTTTAAATTAAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATATT‑TCAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAAc                                                                                                <  2:3204467/128‑1 (MQ=255)
                                      aaGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTaa                                                                                             >  2:3404789/1‑128 (MQ=255)
                                      aaGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTAGAAATaa                                                                                             >  2:160518/1‑128 (MQ=255)
                                       aGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTaaa                                                                                            >  1:3074261/1‑127 (MQ=255)
                                        gtttttataATACAAATTTAAATAAAATGTTCAAACCAAATTCCCCTTTATAATCAAATTTATTTTTATAAATTTAATTTTTTTAAATAAAAATTTT‑TAAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACat                                                                                          <  1:642415/123‑1 (MQ=255)
                                        ggATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAAATaaaa                                                                                           >  1:179590/1‑126 (MQ=255)
                                        ggATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTT‑GAACTAACat                                                                                          >  1:2012681/1‑128 (MQ=255)
                                        ggATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAAAat                                                                                          >  1:589189/1‑128 (MQ=255)
                                        ggATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCACTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTATTTTATTTTATTTGAAATaaaa                                                                                           >  1:3530153/1‑126 (MQ=255)
                                         gATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAAATAACata                                                                                         >  1:2287669/1‑128 (MQ=255)
                                            gTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑‑‑‑‑GTTTTTTTTTTTTTTGGAACAAACATATAAt                                                                                     >  2:2584446/1‑128 (MQ=255)
                                             tataATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTAGTAAATAACaaaaaa                                                                                      >  2:3049084/1‑123 (MQ=255)
                                             tataATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATA‑ACAA‑‑C‑‑TTTTTTTTTTTTTTATTGAACTAACtaataa                                                                                      >  1:1562926/1‑128 (MQ=255)
                                             tataAAAAAAATTAATAATAACTGTTAAACACAAATTAACCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAAt                                                                                     <  1:137896/128‑1 (MQ=255)
                                              ataaaaAAAAATAAAAATAAATTTAAAACAAAAATTCCATTTTAAATTAAAATAAAATTATATAAAAAAAAATTTTTTAAAAAAAAAAATTAAAAA‑‑T‑‑TTTTTTTTTTTTTTTTGGAACTAACATATaa                                                                                      <  2:2033877/128‑1 (MQ=255)
                                              aaaataAAAATTAAAAAAAACTTTACAACCCAAAATCACCTTTAAATTAAAATAACATTAATTTAACAAAAATTTTTTAAATAAAAAAATT‑ACAA‑‑C‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAAt                                                                                     <  1:3391791/126‑1 (MQ=255)
                                                aattaaaaTTAATAATAAATTTAAAACCCAAATTCCCCTTTTAATTCAAATAAAATTATTTAAATATAAATTTTTTTAATAAAAATATT‑ACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAAtttt                                                                                  <  1:3113289/123‑1 (MQ=255)
                                                 ataCAAATAAATAATAACTGTACAACCAAAAATCCCAGTTAAATTCAAATAACAATATATAAAGTTAAATTTTTTAAAGAAAAATAAT‑ACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTa                                                                                 <  1:2841276/128‑1 (MQ=255)
                                                 aaaaaaaTTAATAAAAACAGTACAACACAAATTACCATTTAAATTCAAATTACATTATATAAATATAAATTTTTTAAATAAAAAAATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAAtttt                                                                                  <  1:3711227/124‑1 (MQ=255)
                                                  taCAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAAATAACATATATTTTTAc                                                                                >  2:3959105/1‑128 (MQ=255)
                                                    cAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTTTAAATAACATAAAAATTTAca                                                                               >  1:2550445/1‑127 (MQ=255)
                                                     aatataattataaCTGTTATACCCAAATTTCACTTTAAATTAAAATAACATTATATAAAGATAAATTTTTTAAATAAAAATATT‑ACAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAAtttgtaaa                                                                              <  2:3638115/124‑6 (MQ=255)
                                                     aaaTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAAAAAAAATATAATTTAAcaa                                                                              >  2:1258928/1‑126 (MQ=255)
                                                     aaaTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAAATAAAATATAATTTTACaaa                                                                             >  2:21015/1‑128 (MQ=255)
                                                      aaTTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTGTAACTAACATTAAATTTTACaaa                                                                             >  2:935221/1‑128 (MQ=255)
                                                         taataataaCTTTAAAAACAAAATTCCCATTTAAATTAAAATAAAATTATATAAATATAAATTTTTTAAATAAAAAAATT‑ACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAattat                                                                         <  1:2779225/128‑1 (MQ=255)
                                                            aaaaaaCTTTACAACCCAAATAGCCATAAAAATACAAAAAAAATTAAATAAATAAAAATTTTTTAAATAAAAATATT‑AAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                       <  2:2257358/124‑1 (MQ=255)
                                                             aataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑‑TTTTTTTTTATTTTTGTAAATAACAAATAATTTTACCAAttattaaa                                                                     >  2:664116/1‑126 (MQ=255)
                                                             aataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTCTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTGTAAAAAACAAAAAAATTTACCAAttattaa                                                                      >  2:2137990/1‑127 (MQ=255)
                                                              ataaCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTTAAAATAAAATATATTTTTACAAtttatatta                                                                     >  1:3257722/1‑124 (MQ=255)
                                                              ataaCTGTACAACCAAAATTCCCCTTTAAAATAAAAAAACATTAAATAAATATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGa                                                                     <  1:982147/128‑1 (MQ=255)
                                                              ataaATTTAAAAACCAAATTTAACTTTTAATTTAAATAAAATTATTTAAATATAAATTTTTTAAATAAAAATTTT‑AAAAATT‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAAttatta                                                                       <  2:3105596/128‑1 (MQ=255)
                                                                aaCTGTACAACCAAAATTACCCTTTAAATTCAAATAAAATTATATAAAGTTAAATTTTTTAAATAAAAATATT‑ACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatt                                                                  <  1:3586581/128‑1 (MQ=255)
                                                                 aCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTTTAAATAAAAAATAATTTTAACAATTATTATaaat                                                                  >  2:2648688/1‑126 (MQ=255)
                                                                 aCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTGTAAATAAAATTTAATTTTACCAATTATTATaatt                                                                  >  2:1523629/1‑128 (MQ=255)
                                                                 aCTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAAATACAATATAATTTTACAAATTATTTGtatt                                                                  >  2:352617/1‑128 (MQ=255)
                                                                   tGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTATTTTTTGTAACTAAAATATAATTTTACAAATTTTTATaaattc                                                                >  2:2532526/1‑128 (MQ=255)
                                                                   tGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGTAAAAAAAAAATAATTTTAACAATTATTAGaatttaa                                                               >  1:2938208/1‑126 (MQ=255)
                                                                     tACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTTTAAATAAAATATAATTTTAAAAATTATTAAaatttaaa                                                              >  1:238358/1‑128 (MQ=255)
                                                                     tACAACACAAATTCCCCTTTAAATTAAAATAAAATTATATAAATATAAAATTTTTAAATAAAAATATT‑AAAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaat                                                             <  1:3209828/128‑1 (MQ=255)
                                                                      aCAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTAGGAAAAAAAATAAAATTTAACAAATTTATATaatttaaaa                                                             >  2:370503/1‑127 (MQ=255)
                                                                         aaacAAATTACCATTTAAAATAAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATATTAAAAA‑‑T‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGaatttcaattt                                                           <  1:1303907/125‑1 (MQ=255)
                                                                         aCCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTGTAAAAAAAATAAAATTTTACCAATTATTTTaatttaaattta                                                          >  1:3834711/1‑127 (MQ=255)
                                                                             aaaTTACCATTTAAATTAAAATAAAATTTTATAAATATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGa                                                     <  2:1091608/128‑1 (MQ=255)
                                                                             aaaTTACACTTTAAATTTAAATAAAATTATAAAAATATAAATTTTTTAAATAAAAATATT‑AAAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAg                                                      <  1:1427472/128‑1 (MQ=255)
                                                                              aatttacatttaaatttaaaTAAAATTATTTAAATATAAATTTTTTAAATAAAAATTTT‑A‑AA‑‑A‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                    <  2:872075/120‑1 (MQ=255)
                                                                              aattacaatttaaatttaaaATAAATTATATAAATATTAATTTTTTAAATAAAAATATT‑AAAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGa                                                     <  1:3962771/120‑1 (MQ=255)
                                                                              aaatttaattttAATTAAAATAACATTTAATAATTATAAATTTTTTTAATTTAAATTTT‑TCAA‑‑‑‑‑TTTTTTTTTTTTTTTTGGAACTAACATATATTTTTTCCAATTATTAGAATTTCAATTTCACAGAt                                                    <  2:2896636/120‑1 (MQ=255)
                                                                              aaTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑CTTTTTTTTTTTTTTTTTTGGAAAAAAAAAAAAATTTAACAAATTTTTATaatttaatataacaa                                                       >  2:1978306/1‑118 (MQ=255)
                                                                              aaTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAAATAAAATATAATTTTACAAATTATTTGatttaaaattaaacata                                                     >  1:3319689/1‑121 (MQ=255)
                                                                              aaTTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTGAAAATAACATATAATTTAAACAATTATTAGAATTACAATTTaacata                                                     >  1:1515628/1‑126 (MQ=255)
                                                                               attttcatttaaatttaaaAATAATTATTAAAATAATAATTTTTTAAATTAAAATATT‑AAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGAt                                                    <  2:1466979/121‑1 (MQ=255)
                                                                               aatacccTTTAAATTCAAATAAAATTATTTAAATATAAATTTTTTAAATAAAAATATT‑AAAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTATCAATTATTAGAATTTCAATTTCACAGATg                                                   <  2:3567851/124‑1 (MQ=255)
                                                                                 tacccTTTAAATTAAAATAAAATTATATAAATATAAATTTTTTAAATAAAAATATT‑AAAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGaa                                                 <  1:1929653/126‑1 (MQ=255)
                                                                                   cccTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTTTAAAAAACAAATAATTTAAAAAATTATTATaatttaaaattaaaatattaat                                                >  1:3788299/1‑117 (MQ=255)
                                                                                   accatttaaTTAAAAAAAAATTATAAAAATATTAATTTTTTAAAGAAAAATATT‑AAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAAt                                                <  1:2126339/121‑1 (MQ=255)
                                                                                   acaattaaattaaaAATAAATTTAATAAATATAAATTTTTTAAATAAAAATATT‑AAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAAt                                                <  1:1166619/124‑1 (MQ=255)
                                                                                      ttttAATTTAAATAAAATTATATAAATTTAAATTTTTTAAATAAAAATATTAAAAA‑‑T‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTg                                              <  2:3291885/128‑1 (MQ=255)
                                                                                       ttAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑CTTTTTTTTTTTTTTTGTAAAAAAAATATAATTTTAAAAATTTTATAAATTTAAAATTAAAAGATGATTTAAt                                            >  1:49274/1‑128 (MQ=255)
                                                                                        tataTTAAAATAAATTTATATAAATATAAAATTTTTAATGAAAAATATT‑ACAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAtt                                           <  1:363247/125‑1 (MQ=255)
                                                                                        taatattaaaTAAAATTTTTTAAATTTTAATTTTTTATATAAAAATTTT‑AAAA‑‑A‑‑TTTTTTTTTTTTTTTTTGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAtt                                           <  2:2708140/121‑1 (MQ=255)
                                                                                        tAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTGTAACTAACATAAAATTTTACAAATTATTATAATTTAAATTTAAAAAATTAATTGAtt                                           >  1:2647987/1‑128 (MQ=255)
                                                                                        tAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTGTAACTAAAATAAAATTTTAAAAAATATTAGAATTTAAATTTAAAATATTaattaatt                                           >  1:3896112/1‑128 (MQ=255)
                                                                                        tAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACAAACATATATATTAACAAATAATAATAATTACAATATcccataataaaagatt                                           >  1:2487992/1‑116 (MQ=255)
                                                                                        tAAATTAAAATAAAAATATATAAAAATAAAATTTTTAAATAAAAATATT‑AAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGAtt                                           <  2:1176669/128‑1 (MQ=255)
                                                                                         aaaTTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTTTAAATAAAAAATATTTTTACAAATTTTTATATTTTAAATTTAAAATATTAATTAAttt                                          >  2:2321338/1‑128 (MQ=255)
                                                                                            ataaaaTAACATTATATAAATATAAATTTTTTAAATAAAAATATT‑AAAA‑‑A‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATttctt                                       <  2:1821124/125‑1 (MQ=255)
                                                                                                    aaattattTTAATATTATTTTTTTAAATTAAAATATT‑AAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTaataat                               <  2:238358/126‑1 (MQ=255)
                                                                                                    aCATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAAATAAAATATATTTTTACAAATTATTAGAATTTAAATTTCAAATATGAATTTATTAATTCTAAAAAtt                              >  1:2441048/1‑128 (MQ=255)
                                                                                                           atatatttAAATTTTTTAAATAAAAATATT‑AAAA‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCta                        <  1:2686711/121‑1 (MQ=255)
                                                                                                            taaaataaaaTTTTTTAAATAAAAATATTAAAAA‑‑T‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCta                        <  2:58489/121‑1 (MQ=255)
                                                                                                            taAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑‑‑‑TTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTATAATTTCAATTTAACAGATGAATTGATTTCTTCTAATAATTTGTCtatata                    >  1:1640940/1‑128 (MQ=255)
                                                                                                             aaaGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTTGAACTAAAATATAATTTTACAAATTATTATAATTTAAATTAAACATATGAATTGATTAATTCTAATAAATTGTatatt                      >  1:3165181/1‑127 (MQ=255)
                                                                                                                 tataaTTTTTTAAATAAAAATATT‑AAAA‑‑A‑‑TTTTTTTTTTTTTTTTGTAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGa                  <  2:1332872/125‑1 (MQ=255)
                                                                                                                    aaTTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCAAAGATGAATTGATTTCTTCTAATAATTTGTATAAATAGATGt               >  2:49210/1‑128 (MQ=255)
                                                                                                                        ttttAATAAAAAAT‑TT‑AAAC‑‑A‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGtttttt          <  2:3160315/128‑1 (MQ=255)
                                                                                                                         tttAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTTGAACTAAAAAAAAATTTTACCAATTATTATAATTTCAATTTAACATATGAATTTATTTCTTATAATAATTTTTAAATATATAtttttttt          >  2:2971250/1‑128 (MQ=255)
                                                                                                                         tttAAAGAAAAATATT‑ACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGGAACTAAAATATAATTTTACAAATTATTATAATTTAAATTTAACATATGATTTGATTTATTATAATAATTTTTATATATATTTGTTTTTta         >  1:1097594/1‑128 (MQ=255)
                                                                                                                          ttAAATAAAAATATT‑AAAAATT‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGttttt           <  2:278999/128‑1 (MQ=255)
                                                                                                                            aaaTAAAAATATT‑A‑AA‑‑A‑‑ATTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTatat      <  2:243516/128‑1 (MQ=255)
                                                                                                                            aaaGAAAAATATT‑ACAA‑‑C‑‑‑TTTTTTTTTTTTTTTGTAAATAAAATAAAATTTTACAAATTAATAGAATTTCAATATAACAAATAAAATGATATCTTCAAATAATTTGTCTATATATATGTTTTTTaaat      >  2:2474307/1‑128 (MQ=255)
                                                                                                                             aaGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACAAACAAATAATTTTACCAAAAATTAGAATTTAAATTTCACATATGAATTGATTTATTATAATAATTTTTATATAATGATTTTTTTTatat      >  1:2196827/1‑128 (MQ=255)
                                                                                                                               gAAAAATATT‑ACAA‑‑C‑‑‑TTATTTTTTTTTTATGGAACTAAAATATAATTTTACCAATTATAAGAATTACAATTTAAAAAATTAAATCAATACTTAAAATAATTTATAAATTTATATGTTTATAATATCTa   >  1:3006399/1‑128 (MQ=255)
                                                                                                                               |                                                                                                                                      
TAATATCTCCTTAAAAATTTATATATATTAGTGAACTTAAGGATGTATAATACAAATTAATAATAACTGTACAACCCAAATTCCCCTTTAAATTCAAATAACATTATATAAAGATAAATTTTTTAAAGAAAAATATT‑ACAA‑‑C‑‑TTTTTTTTTTTTTTTTGGAACTAACATATAATTTTACCAATTATTAGAATTTCAATTTCACAGATGAATTGATTTCTTCTAATAATTTGTCTATATAGATGTTTTTTATATCTAA  >  CP016816/76751‑77007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑