BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	202,485	0	T	.	65.5%	89.1 / inf	242	intergenic (+263/‑412)	JCVSYN2_00840/JCVSYN2_00845	hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand): ref base T (20/50); new base . (51/82); total (90/152)
Fisher's exact test for biased strand distribution p-value = 2.15e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.87e-01

Only 100 of 287 total aligned reads displayed.

AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAA‑‑‑AAAATAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAT  >  CP016816/202358‑202601

aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCt                                                                                                                          <  2:3955952/128‑1 (MQ=255)

 attttttgtAAATAATATATTTAAGTTTAATTAAAATAACATAAACTTAATTATTATTATAATGTAGATACTAGTTATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                         <  2:2280503/122‑1 (MQ=255)

  gTTAGTTTAAATAATATAGTTAATGTTAATTAAAATACCATAAACTTAAAAATTCTTATAATTTATATCCTCGTTTTCTATTTTTTTATTTGTTTTTCTTCACAAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                        <  2:3869748/128‑2 (MQ=255)

  gTTAGTGTAAATAATATAGTTAATGTTAATTAAAATACCAAAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTTTTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                        <  2:2985703/128‑2 (MQ=255)

  gTTAGTGTAAATAATAGTGTTAAGGTTAATTAAAATAACATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCCCttaa                                                                                                                       <  2:1078830/128‑3 (MQ=255)

  gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                        <  1:3819055/128‑2 (MQ=255)

  gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACCtta                                                                                                                        >  1:3283849/1‑127 (MQ=255)

  gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCCtta                                                                                                                        >  1:3431770/1‑127 (MQ=255)

     aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTATTATTTTTTAATCTTCACAAAT‑AAAAAAAAAACAAAACCCttaaaa                                                                                                                     >  2:2166043/1‑124 (MQ=255)

     aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCAttaaaa                                                                                                                     >  2:3840125/1‑124 (MQ=255)

       tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTTGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCCttaaaaat                                                                                                                   >  2:3201110/1‑122 (MQ=255)

        tttaataatATAGTTAAGGTTAATAAAAATACAATAAAATTAATAATTCATAAAATTTAGATCCTCGTGATATATTTTTTTATTTGTTTAACTTCACAAAT‑AAAAAAAAAACAATCCCCttaaaaatt                                                                                                                  <  1:2420134/125‑8 (MQ=255)

           aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTGGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCC‑‑attaa‑‑‑aaattaaaa                                                                                                         >  1:3341020/1‑128 (MQ=255)

           aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCttaaaaattaaa                                                                                                               >  2:2983957/1‑118 (MQ=255)

            ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACCtt‑‑‑a‑‑‑aaaataaaaa                                                                                                        >  2:912992/1‑128 (MQ=255)

             taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAATACAC‑‑ttaa‑‑‑aaattaaaaa                                                                                                        >  1:2606070/1‑128 (MQ=255)

                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCACTTGATCTATTTTTTTATTTTTTTATCTTAAAAAAT‑AAAAAAAAAACAAT‑‑ACAATAAA‑‑‑AAAATaaaaaaaa                                                                                                     >  2:1385024/1‑128 (MQ=255)

                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑AAAATaaaaaaaaa                                                                                                    >  1:3035482/1‑128 (MQ=255)

                taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTaaaaaaaa                                                                                                     >  2:3677425/1‑128 (MQ=255)

                 agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATAACATT‑‑‑A‑‑‑AAAATaaaaaaaaa‑a                                                                                                  >  2:1214077/1‑128 (MQ=255)

                 agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTACACAAAT‑AAAAAAAAAACAATACCC‑‑TTAA‑‑‑AAATTaaaaaaaaa                                                                                                    >  2:3632314/1‑128 (MQ=255)

                     ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTaaaaaaaaa‑aaaa                                                                                               >  2:3366490/1‑128 (MQ=255)

                     ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAA‑‑‑AAATTaaaaaaaaa‑aaaa                                                                                               >  2:3500837/1‑128 (MQ=255)

                     ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACCC‑‑TTAA‑‑‑AAATTaaaaaaaaa‑aaaa                                                                                               >  2:3702872/1‑128 (MQ=255)

                      tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATAACCTCGTTATATATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTaaaaaaaaa‑aaaaa                                                                                              <  1:288926/128‑1 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTaaaaaaaaa‑aaaaaa                                                                                             >  2:3231204/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAA‑‑‑AAATTaaaaaaaaa‑aaaaaa                                                                                             >  2:1011047/1‑128 (MQ=255)

                       aaGGTTAATTAAAATACCATAAACTTAATAATTATTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAAACAC‑‑‑AAA‑‑‑AAAATtaaaaaaaa‑aaaaaaa                                                                                            >  2:487486/1‑128 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTaaaaaaaaa‑aaaaaaaa                                                                                           >  2:3538457/1‑128 (MQ=255)

                         ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAATTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACC‑‑‑ATAA‑‑‑AAAATtaaaaaaaa‑aaaaaaaaa                                                                                          >  2:2533912/1‑128 (MQ=255)

                          ttttattaaAAAAATATAAACTTATAAATTTTTAAAATTTATAAACTATTTATATATTTTTTTATTTTTTATTATAAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑‑AAATTaaaaaaaaa‑aaaaaaaaa                                                                                          <  1:2489718/124‑1 (MQ=255)

                          gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTaaaaaaaaa‑aaaaaaaaa                                                                                          >  2:3143326/1‑128 (MQ=255)

                          gTTAATTAAAATAAAATAAAATTAATAATTAATAAAATTTATATCATAGTTATCTATTTTTTTATTTTTTTATATTAACAAAA‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTaaaaaaaaa‑aaaaaaaaa                                                                                          <  1:1884577/128‑1 (MQ=255)

                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTATTTAACTTCACAAAA‑AAAAAAAAAAAAAACC‑‑‑AAAAA‑‑‑AAAATaaaaaaaaa‑aaaaaaaaaaaa                                                                                       >  2:1511183/1‑128 (MQ=255)

                            taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATACTCTTAATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAAAACAC‑‑ATAA‑‑‑AAATTaaaaaaaaa‑aaaaaaaaaaaa                                                                                       >  1:3532206/1‑128 (MQ=255)

                             aaataaaataaaaTAAACTTTATAATTATTATAATTTATCTACTATGGATATTTTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAA‑‑‑AAATTaaaaaaaaa‑aaaaaaaaaaaa                                                                                       <  1:3028659/125‑1 (MQ=255)

                              attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAA‑AAAAAAAAAATAA‑‑‑AAATTaaaaaaaaa‑aaaaaaaaaaaa                                                                                       >  2:204118/1‑128 (MQ=255)

                              attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTATTTGATTATCTTCACAAAT‑AAAAAAAAAAAAATCCACAaaaaa‑‑‑aaaaaaaaaaaaaa‑aaaaaaaaaaa                                                                                        >  2:1861461/1‑128 (MQ=255)

                              attaaAATACCATAAACTTAATAATTATTATAATATATATAATCGTGATCTATTTAATTATTTATTAATCTAAAAAAAT‑AAAAAAAAAA‑AAT‑‑CAAATTAA‑‑‑AAATTaaaaaaaaa‑aaaaaaaaaaaaaa                                                                                     >  1:1425680/1‑126 (MQ=255)

                              attaaAATACCATAAACTTAATAATACTTATAATGTAGATCAACTAGATCTAATTTTATATTTATTAAACTTCACAAAA‑AAAAAAAAAAAAAACCC‑‑‑AAAA‑‑‑AAAATaaaaaaaaa‑aaaaaaaaaaaaaa                                                                                     >  2:1716103/1‑126 (MQ=255)

                               ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCAATTAAAA‑‑‑ATaaaaaaaaaaaa‑aaaaaaaaaaaa                                                                                       >  1:3580429/1‑128 (MQ=255)

                                 aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAA‑‑‑AAATTaaaaaaaaa‑aaaaaaaaaaaaaaaa                                                                                   >  2:3049022/1‑124 (MQ=255)

                                  aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTAACTTCACAAAT‑AAAAAAAAAACAATCCCATT‑‑‑A‑‑‑AAAATTAAAAAAAA‑AAAAAAAAAAAACAaaaa                                                                                 >  2:3257135/1‑128 (MQ=255)

                                  aaaTACCATAAACTTAATAATTCTTATAATGTAGATACTCTAGATCTATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAAT‑‑AAAATAAA‑‑‑AAATTaaaaaaaaa‑aaaaaaaaaaaaaaaaa                                                                                  >  2:2658250/1‑123 (MQ=255)

                                       ccATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTaaaaaaaaa‑aaaaaaaaaaataaaaaaaaaa                                                                             >  1:3102395/1‑117 (MQ=255)

                                       acaaaaaaTTAATAAATATTATAATTTATATAATTTTTAAATATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑A‑‑‑AAAATTAAAAAAAA‑AAAAAAAAAAAACTAAaaacaaa                                                                            <  1:1355799/124‑1 (MQ=255)

                                            aaattAATAATTCTTAAAATTAATAAACTCTTTATATTTTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑AAAATTAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTa                                                                       <  1:3265260/125‑1 (MQ=255)

                                              attAAAAATTTTTATAATTTATATACAATTTATTTATTTTTTTATTTTTTTATCTTAAAAAAT‑AAAAAAAAAAAAATCCCC‑TTAAA‑‑‑AATTAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTa                                                                       <  1:2984129/127‑1 (MQ=255)

                                                taaaaaTTTTTATAATTTAGTAACTCGTTATATTTTTTTTTTTTTTTTTATATTCAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAA‑‑‑AAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTAttt                                                                    <  2:3599478/128‑1 (MQ=255)

                                                 aataaataTTATAATGTATAACCTCGTTATATATTTTTTTATTTTTTTATCTTCAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑AAAAT‑‑‑TAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                               <  1:3370337/128‑1 (MQ=255)

                                                  ataatTATTATAATTTATATCCAGGTGATCTATTTTTTTATTTTTTTATCTTCAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑‑AAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                  <  1:3642137/128‑1 (MQ=255)

                                                             aaTTTAGATACACGTGTTTTATTTTTTTATTTGTTTATAATAACAAAT‑AAAAAAAAAA‑AAACCACTT‑‑‑A‑‑‑AAAAT‑TAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                    <  1:3498849/128‑1 (MQ=255)

                                                                   ttatcacGTGTTTTATTTTTTTTTTTTTTTATCATAAAAAAA‑AAAAAAAAAAAAATACCC‑ATAAA‑‑‑AATTAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                  <  2:3613599/122‑1 (MQ=255)

                                                                     ttatttttttaaaTTTTTTTTTTTTTTTATATTAAAATAT‑AAAAAAAAAAAAATTCACTTT‑‑A‑‑‑AAATTTAAAAAAAA‑AAAAAAAAAAAA‑TAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                              <  2:81037/116‑1 (MQ=255)

                                                                      tatttttatattttttttttttttttTAT‑TTTAAAAAA‑AAAAAAAAAAAAAAACCCATAAAA‑‑‑AAATAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                               <  1:2287913/116‑1 (MQ=255)

                                                                      acatttttattATTTTTTTTTTTTTTTATTATAAAAAAA‑AAAAAAAAAAAAAATCCC‑‑TTAA‑‑‑AAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                              <  1:870736/118‑1 (MQ=255)

                                                                      aaaatttatatatttttttattttttTATATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑ATAA‑‑‑AAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                              <  1:103008/118‑1 (MQ=255)

                                                                        attttttatATTTTTTTTTTTTTTTATAAT‑AAAAAA‑AAAAAAAAAAAAATAAACTTAAAA‑‑‑AATAAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                             <  1:604065/120‑1 (MQ=255)

                                                                          ttttttttttttttttttttttttTATAAAAAAAA‑AAAAAAAAAAAAAACCCATTAAAA‑‑‑ATTAAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                            <  1:496538/120‑1 (MQ=19)

                                                                           tttttttttttttttttttttTATTTTAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAT‑‑‑AAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                         <  2:398455/121‑1 (MQ=255)

                                                                            attatatttttttattt‑tttATAATTAAAAAA‑AAAAAAAAAAAAAAAACCATT‑‑A‑‑‑AAAATTAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                       <  1:1188682/124‑1 (MQ=255)

                                                                             tatttattttttattttttaATTTTAAAAAAA‑AAAAAAAAAAAAATCACC‑‑TTAA‑‑‑AAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATATCTTAAAATTCCCTATTATACCACatttta                                       <  2:2752800/122‑1 (MQ=255)

                                                                             taaattttttttATTTTTTAATTTTAAAAAAA‑AAAAAAAAAAAAAACCC‑‑ATAAA‑‑‑AAATAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                       <  1:3167109/123‑1 (MQ=255)

                                                                             atttatttttttattttttTATTTTAAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑A‑‑‑AAAAT‑TAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatcttatt                                     <  1:3560551/125‑1 (MQ=255)

                                                                              atattttttttATTT‑TTAATAATAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAA‑‑‑AAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                     <  1:1173529/124‑1 (MQ=255)

                                                                               cTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑AAAATTAAAAAAAA‑AAAAAAAAAAAACTAAAAAAAAAAAATATTTCTTAAAATTCACTATAATTCCACattttatat                                    >  2:2070198/1‑126 (MQ=255)

                                                                                 aattttttttttttttttttATAAAAAT‑AAAAAAAAAAAAAAACCCATT‑‑A‑‑‑AAAATAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                   <  1:3538457/126‑1 (MQ=255)

                                                                                  tttttttatttttttaTATTAAAAAAT‑AAAAAAAAAACAAACCCCTT‑‑‑A‑‑‑AAAATTAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                 <  1:912992/128‑1 (MQ=255)

                                                                                  tttttttatttttttaTATTAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAA‑‑‑AAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                  <  1:272589/128‑1 (MQ=255)

                                                                                  tttttttATTT‑TTTATTTTAAAAAAT‑AAAAAAAAAA‑AAAAACCTTTTAA‑‑‑AATTAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCATATTTTAttttt                                  <  1:2073840/128‑1 (MQ=255)

                                                                                  tttttttATAT‑TTAATCTTAACAAAA‑AAAAAAAAAAAAATACCC‑TTAAA‑‑‑AAATAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                  <  1:1115188/128‑1 (MQ=255)

                                                                                   ttttttttttttttATATTAACAAAA‑AAAAAAAAAAAAAATCCC‑TTAAA‑‑‑AAATAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                  <  1:3297069/128‑1 (MQ=255)

                                                                                   ttttttttttttttATATTAAAAAAA‑AAAAAAAAAAAAAAACCATTAAAA‑‑‑ATTAAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                   <  2:76658/128‑1 (MQ=255)

                                                                                   ttttttttttttTAAAATTTAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAA‑‑‑AAATAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                 <  1:1214077/128‑1 (MQ=255)

                                                                                   ttttttatttttttatATTAAAAAAT‑AAAAAAAAAAAAATACCC‑‑TTAA‑‑‑AAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                 <  2:3824318/128‑1 (MQ=255)

                                                                                   tttttaATTTTTTTATATAAAAAAAA‑AAAAAAAAAAAAAT‑‑ACAATAAA‑‑‑AAATAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                 <  1:445315/128‑1 (MQ=255)

                                                                                     ttttatttttttatttTAAAAAATAAAAAAAAAAACAATCCC‑‑AATAA‑‑‑AAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                <  2:3792918/128‑1 (MQ=255)

                                                                                     ttttATTTTTTTATAATAACAAAT‑‑AAAAAAAAACAATCCCATT‑‑‑A‑‑‑AAAAT‑‑TAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                           <  1:2509396/128‑1 (MQ=255)

                                                                                     ttttAATTTTTTATATTAACAAAT‑AAAAAAAAAAAAATCCCCAT‑‑‑A‑‑‑AAAATTAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                              <  1:3063377/128‑1 (MQ=255)

                                                                                      tttATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATACCC‑ATAAA‑‑‑AAATAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                               <  1:746761/128‑1 (MQ=255)

                                                                                       ttATTTTTTTATATT‑AAAAAA‑AAAAAAAAAAAAATAAC‑‑ATTAA‑‑‑AAAATAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                            <  1:380043/128‑1 (MQ=255)

                                                                                          ttttttTATATTAAAAAAA‑AAAAAAAAAAAAAAACAC‑‑TTAA‑‑‑AAAAT‑AAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                         <  2:3035482/128‑1 (MQ=255)

                                                                                          tttGTTTAAATTAAAAAAA‑AAAAAAAAAAAAATACCATTAAAA‑‑‑ATTAAAAAAAAAAA‑AAAAAAAAAACACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                            <  1:2775978/128‑1 (MQ=255)

                                                                                            tGTTTATATTTAAAAAA‑TAAAAAAAAAAAATTCCCTTT‑‑‑‑‑‑AAAATTTAAAAAAA‑AAAAAAAAAAAACTAAAAACTAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                       <  2:3322064/128‑1 (MQ=255)

                                                                                              tttATATTAAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑A‑‑‑AAAATTAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                     <  1:1598060/128‑1 (MQ=255)

                                                                                               ttATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTAAAAAAAAA‑AAAAAAAAAAAAATAAAAAAAAACTATATTTATTAAAATTACAAATTAAAACAAATTATATTTTTAAAATAAAATAtt                     >  1:3200953/1‑128 (MQ=255)

                                                                                                tttattataaaaa‑aaaaaaaaaaaaaaATACATTT‑A‑‑‑AAAATTAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                     <  2:2351129/119‑1 (MQ=255)

                                                                                                tatatttaaaaaa‑aaaaaaaaaaaaATACCCTTAAAAATTAAAAAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                         <  1:3610189/119‑1 (MQ=255)

                                                                                                tataTTAACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAA‑‑‑AAATAAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                    <  2:3269553/128‑1 (MQ=255)

                                                                                                    ttaaaaaaa‑aaaaaaaaaaaaATACAC‑‑TTAA‑‑‑AAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                <  2:3099461/123‑1 (MQ=255)

                                                                                                    attaaaaaa‑aaaaaaaaaaaaaaaaCCATAT‑A‑‑‑AAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                 <  1:222754/123‑1 (MQ=255)

                                                                                                     taaaaaaa‑aaaaaaaaaaaaATCCC‑‑ATTAA‑‑‑AAATTAAAAAAAAA‑AAAAAAAAAAAAATAAAAACAAACTCTATTTATTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata               <  1:1511183/124‑1 (MQ=255)

                                                                                                      cacaAAT‑AAAAAAAAAACAATCCCC‑‑TTAA‑‑‑AAATTAAAAAAAAAGAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACaaa               >  1:1784977/1‑126 (MQ=255)

                                                                                                        caAAT‑AAAAAAAAAACAATCCCC‑TTAAA‑‑‑AATTAAAAAAAAAA‑AAAAAAAAAAAACTAAAAAAAAAATATATTTTTTAAAATAACAAATTATAACACATTTTATTTTTAAAAAAAGAAATTAAaataat             >  2:2973612/1‑128 (MQ=255)

                                                                                                        aaaaa‑aaaaaaaaaaaaaaaaCCCATTAA‑‑‑AAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa              <  1:3246526/127‑1 (MQ=255)

                                                                                                        aaaaa‑aaaaaaaaaaaaATACACA‑‑TAA‑‑‑AAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata            <  1:2011034/127‑1 (MQ=255)

                                                                                                           aT‑AAAAAAAAAACAATCCCCTT‑‑‑A‑‑‑AAAATTAAAAAAAA‑AAAAAAAAAA‑‑‑‑AAAAACAAAAACTTTTTATTAAAATTCCATATTAAACAACATTTTTTTTTTAAAATAAGATATTAAATTAATATTtatata    >  2:431221/1‑128 (MQ=255)

                                                                                                            taaaaaaaaaaaCAATCCCCTT‑‑‑A‑‑‑AAAAT‑‑TAAAAAA‑AAAAAAAAAAAACTAAAAACAAAAACTATTAATTAAAATTCAATATTTTAAAAAATTTTTTTTTTAAAATAAGATATTAAAAAAttatataaa      >  1:3127480/3‑126 (MQ=255)

                                                                                                             aaaaaaaaaaaaaaaACCC‑‑TTAA‑‑‑AAATTAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata        <  1:414404/127‑1 (MQ=255)

                                                                                                                aaaaaaaaaaaaCCCCTT‑‑‑A‑‑‑AAAATTAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTa    <  2:977206/128‑1 (MQ=255)

AAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAA‑‑‑AAAATAAAAAAAAA‑AAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAT  >  CP016816/202358‑202601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`