| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP016816 | 165,218 | A→T | intergenic (+182/‑360) | JCVSYN2_00665 → / → JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP016816 | 165,218 | 0 | A | T | 98.1% | 3641.3 / NA | 1258 | intergenic (+182/‑360) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| Reads supporting (aligned to +/- strand): ref base A (3/21); new base T (808/426); total (811/447) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.64e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 1308 total aligned reads displayed.
TATTTACTTTAATTGTATTACTTTACTAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTAAAAGAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAA > CP016816/165091‑165344 | tttACTTTAATTGTATTACTTTACTAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTtaa < 2:1419605/128‑1 (MQ=255) tttACTTTAATTGTATTACTTTACTAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTtaa > 1:2754864/1‑128 (MQ=255) tttACATTAATTGTATTACTTTACTAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTtaa < 1:2561906/128‑1 (MQ=255) tACTTTAATTGTATTACTTTACTAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTtaaaa > 2:450670/1‑127 (MQ=255) aCTTTAATTGTATTACTTTACTAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTtaaaaa < 2:611442/128‑3 (MQ=255) aCTTTAATTGTATTACTTTACTAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTtaaaaa < 2:3088817/128‑3 (MQ=255) aCTTTAATTGTATTACTTTACTAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTtaaaaa > 2:1763157/1‑126 (MQ=255) cTTTAATTGTATTACTTTACTAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTaaaaaa < 2:3880004/128‑1 (MQ=255) ttAATTGTATTACTTTACTAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAAATATTAACTTTTTATATATTTTTTTAATA‑TGAAAA‑TTTTTAAAAaata > 2:2304370/1‑127 (MQ=255) tAATTGTATTACTTTACTAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTtaa > 1:18468/1‑121 (MQ=255) tAATTGTATTACTTTACTAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAaatta > 2:3529033/1‑128 (MQ=255) aTTGTATTACTTTACTAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAaatta‑at > 2:2595717/1‑128 (MQ=255) aTTGTATTACTTTACTAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAaatta‑at > 1:3191566/1‑128 (MQ=255) aTTGTATTACTTTACTAGTTGATAATATTTAGTATCATTAATTTTTCGCAGTTGTATGAATTAGTAAGAATCTAAAACTAATATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAaatta‑at < 1:2071015/128‑1 (MQ=255) ttGTATTACTTTACTAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAaatta‑att < 2:50683/128‑1 (MQ=255) gTATTACTTTACTAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTg > 1:2678483/1‑128 (MQ=255) gTATTACTTTACTAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTg < 2:2857268/128‑1 (MQ=255) gTATTACTTTACTAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTATTTATA‑TGCAAA‑TTTTTAAAAAATTA‑Atttt > 1:2987892/1‑127 (MQ=255) ttactttactAGTTGATAATATTTAGTATCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTTTTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAAc < 1:3813443/128‑1 (MQ=255) ctttactAGTTGATAATATTTAGTTTCATTAATTTCTCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTg < 1:1515524/128‑1 (MQ=255) ctttactAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTg < 2:945068/128‑1 (MQ=255) ctttactAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTg > 1:112776/1‑128 (MQ=255) ctttactAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAAAttt > 1:2387828/1‑127 (MQ=255) tttactAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGt > 2:3251741/1‑128 (MQ=255) tttactAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGt > 2:1497148/1‑128 (MQ=255) tttactAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGt > 1:3415625/1‑128 (MQ=255) ttactAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTTTa > 2:2683087/1‑128 (MQ=255) tactAGTTGATATTATTTAGTTTCATTAATTTATCTCTCTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTaa < 2:2963514/128‑1 (MQ=255) tactAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATTAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTaa < 2:334254/128‑1 (MQ=255) tAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTaaaaa > 1:2420847/1‑128 (MQ=255) gTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAAt > 1:598911/1‑128 (MQ=255) taattTTTATTTTAATTAATTTATATTAATTTTTTTAATTATTAATAAAATAAAAATATTATATTTTTATATATTTTTTTTATA‑TTAAAA‑TTTTTAAAAAATTA‑AATTTAACTTGTAAAAAATAGC‑tt < 1:536456/128‑1 (MQ=255) taataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑tt > 1:1352754/1‑128 (MQ=255) aataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑ttt > 1:3075382/1‑128 (MQ=255) aataTTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑ttt > 1:203210/1‑128 (MQ=255) aataTTTAGTTTCATTAAATTATAGCAATTGGATGTAATTGTAATAAAAAAAAACTATTATCTTTTTATATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAAATA‑ATTTTAAATTGTAAAAAATAGC‑ttt < 2:1812682/128‑1 (MQ=255) atatTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑tttt > 2:395949/1‑128 (MQ=255) atatTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑tttt > 1:3726014/1‑128 (MQ=255) tAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTTTAAAAAATAGC‑ttttttttt > 2:3757204/1‑128 (MQ=255) gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTTAACTTGTAAAAAATATA‑ttttttttttt > 1:2116474/1‑128 (MQ=255) gTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑ttttttttttt > 2:3467967/1‑128 (MQ=255) tttCATTAATTTATCGCACTTTTATTAATTATTAAGAAACTAAAACTATTATATTTTTAGATATTTTTTTTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTTAACTTGTAAAAAAAAGC‑tttttttttttt < 1:3263474/128‑1 (MQ=255) tttCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑tttttttttttt > 1:3338971/1‑128 (MQ=255) aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑tttttttttttttttt > 1:856916/1‑128 (MQ=255) aTTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑tttttttatttttttt > 1:375451/1‑128 (MQ=255) ttAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑tttttttttttttattt > 1:1065492/1‑128 (MQ=255) tttttatctattGTTTTAATTATTAATAAAATAAAAATATTATTTTTTTTTATATTTTTTTTATA‑TTCAAA‑TTTTTTAAAAATTA‑ATTTTAAATTTTAAAAAATACC‑TTTTTTTTTTTTTTTTTTtat < 1:2888534/118‑1 (MQ=255) tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAATAAATAGC‑ttgttttttattttttttaaa > 2:3038378/1‑125 (MQ=255) tttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTAAA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑tttttttttttttttttttta > 2:3172566/1‑126 (MQ=255) ttATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATATC‑ttttttttttttttttttaaat > 2:2063339/1‑124 (MQ=255) ttagaaattttATTAATTATTAAAAAAATAAAAATATTATATTTTTTTATATTTTTTTTTTA‑TTCAAA‑TTTTTAAAAAATTA‑ATTTTAAATTTTAAAAAATATC‑‑TTTTTTTTTTTTTTTTTTATAATg < 2:2112246/118‑1 (MQ=255) cGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTatatttaaa > 1:976951/1‑123 (MQ=255) gCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATgta > 1:3458019/1‑126 (MQ=255) cTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTTAAata > 2:3823234/1‑128 (MQ=255) ttGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTtaataatttaaat > 1:1602407/1‑117 (MQ=255) aTGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATATC‑TTTTTTTTTTTTTTTTTTTA‑AATTTAAATAAAAAt > 2:1583990/1‑128 (MQ=255) aTGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTA‑AATGAAAATATAAAt > 1:1186408/1‑128 (MQ=255) ttaataattaataaAATAAAAATATTATTTTTTTTTATATTTTTTTTATA‑TGAAAA‑TTTTTAAAAAATTA‑ATTTTAACTTTTAAAAAAT‑TT‑GTTTTTTTTTTTTTTTTTTATAATGGAAATATAAAtt < 2:856916/120‑1 (MQ=255) tGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAT‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAATTAGA‑TTTTTTTTTTTTTTTTTTTAT‑‑TGTAAATAAAAAttt > 1:2616999/1‑128 (MQ=255) gAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATGGC‑‑‑TTTTTTTTTTTTTTTTTATATTGTAAATATAATtttt > 2:2453844/1‑128 (MQ=255) ttAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTTAAAAATAATTTTTat > 2:1967989/1‑127 (MQ=255) tAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTAATAATTAAAATAAAAATTTTat > 1:1671750/1‑127 (MQ=255) tttataaaataaaaataTTTTTTTTTTTTTTTTTTTTTTTTTA‑TTTAAATTTTTTAAAAAATTA‑TTTTTAAATT‑TTAAAAATATT‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt < 2:2396022/123‑1 (MQ=255) ttaattaactaaaaataTTTTATTTTTTTATATTTTTTTTATA‑TTTAAA‑TTTTTTAAAAATTA‑ATTTTAAATTTTAAAAAATATA‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGt < 1:2481426/122‑1 (MQ=255) taataaACAAAAAATATTTTTTTTTTATATATTTTTTTTATA‑TTAAAA‑TTTTTAAAAAAATA‑ATTTGTACTTTTAAAAAAAA‑‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTAtt < 2:2211611/128‑1 (MQ=255) tAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATTAAAATATAAATTTTattta > 1:3121720/1‑124 (MQ=255) aaGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTAAAATATAAATATAAATTTtatttatt > 1:1399061/1‑128 (MQ=255) ttatataaaaataTTTTTTTTTTTTATATTTTTTTTATA‑TTTAAA‑TTTTTTAAAAATTA‑ATTTTTAATTTTAAAAAATATC‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTAtttt < 1:1285489/123‑1 (MQ=255) gAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTA‑AATTTAAAAAAAAAATTTATTTAtttt > 2:3685281/1‑128 (MQ=255) actaTTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTAAAATATAAATTTAATTTATTTTTTTTTATaa > 1:2323002/1‑128 (MQ=255) atattttCTATTTAATTAATTTTTTTTTATTGAAAA‑TTTTAAAA‑AATTA‑ATTTTAAATTTTAAAAAATATC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTaa < 2:725298/127‑1 (MQ=255) ttatCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTTTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTATTTTTTTGTATAAGTAta > 1:3668587/1‑127 (MQ=255) ttatCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGCTTTTTTTTTTTTTTTTTTTTAAAATTTAAATATAAATTTTATTTATTTTTTTTTATaatt > 1:2795026/1‑126 (MQ=255) tttAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTAAAATTTAAATTTAAATTTTATTAATTTTTTTTTATAATTATAaaaaaa > 1:918679/1‑128 (MQ=255) ttatttatTTTTTTTATA‑TTAAAA‑TTTTTAAAAAATTA‑ATTTTTAATTTTTAAAAATA‑‑‑TGTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaaa < 2:1042856/123‑1 (MQ=255) ttAGATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAG‑‑ATTTTTTTTTTTTTTTTATAAAATTTAAATATAAAATTTATTAATTTTTTTTTATAATTATATaaaaaa > 1:719889/1‑128 (MQ=255) tatatatTTTTTTTTTA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTTAACTTTTAAAAAATA‑T‑GTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaaa < 2:1351487/125‑1 (MQ=255) attattattttttttA‑TGTATA‑TTTTTAAAAAAATT‑ATTTTAAATTTTTAAAAATTTT‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTaaaaaaa < 2:3426910/121‑1 (MQ=255) aGATATTTTTTGTTTA‑TTCAAA‑TTTTTAAAAAATTA‑ATTTTTAATTTTAAAAAATA‑‑‑‑‑TCTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGa < 1:1461200/128‑1 (MQ=255) tttatTTTTTTTTTA‑TTTAAA‑TTTTTAAAAAATTA‑TTTTTAAATTTTAAAAAAT‑TT‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATa < 1:1964910/126‑1 (MQ=255) tttatTTTTTTTATA‑TGTAAA‑TTTTTTAAAAATTA‑ATTTTTATTTTTATAAAAT‑TT‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATa < 2:1882546/126‑1 (MQ=255) gATATTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGTTATTTTTTTTTATAAGTATATaaaaaaaaaa > 1:3389532/1‑125 (MQ=255) atatTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGTAAATATAAATTTTAGGTATTTTTTTTTCTAATTATATAAAAAAATaa > 1:3532185/1‑127 (MQ=255) atatTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTAAATTGGAAATAAAAATTTTATGTATTTTTTTGTATATTTTTCTAAAAAAAttta > 2:1189059/1‑125 (MQ=255) tatTTTTTTTATA‑ATCAAA‑TTTTTAAATAATTA‑ATTTTAACTTTTAAAAATTA‑‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGaa < 1:2281378/128‑1 (MQ=255) atatttttGTTTA‑TTTAAA‑TTTTTTAAAAATTA‑ATTATTAATTTTTAAAAATA‑T‑ATTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGa < 1:455326/125‑1 (MQ=255) atTTTTTGTTAA‑TTAAAA‑TTTTTAAAAAATTA‑ATTTTAAATTTTAAAAAAAAGC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGa < 1:400667/128‑1 (MQ=255) atTTTTTGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTAGTTATTTTTTTGTATAATTATATAAAAAAATATaaa > 1:1004419/1‑128 (MQ=255) ttttttTATA‑TTAAAA‑TTTTTAAAAATTTA‑ATTTTAAATTTTAAAAATTAG‑‑TTTTTTTTTTTTTTTTTTTATATTGTAAATATAAATTTTATGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAg < 2:3586706/128‑1 (MQ=255) tttttGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATTTAATTATAAATTTTAGTTTTTTTTTTTGATATTTTTATAAAAAAATaaaatg > 1:1752756/1‑126 (MQ=255) tttGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATGTATTTTTTTTTATAATTATAaaaaaaaaaaaaaaat > 2:1117386/1‑126 (MQ=255) ttttttattaaaa‑TTTTTAAA‑AATTATATTTTAATTTTTAAAAAATA‑‑‑‑TTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaa < 2:2778642/118‑1 (MQ=255) tGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTT‑‑TAATTTAAATAAAATTTTTATTTATTTTTTTTTTAAATTTTATAAAAAATTATAAATTaaaa > 1:802147/1‑128 (MQ=255) tGTATA‑TGCAAA‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATGAAAATATAAATTTTAGTTATTTTTTTTTAAAATTAACTAAAAAAAAAAAAACTaaaa > 2:165499/1‑128 (MQ=255) tttttatttaaa‑TTTTTAAAAAATTT‑ATTTTAAATTTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGaaaa < 2:31377/119‑1 (MQ=255) ta‑tTCAAA‑TTTTTAAAAAATTT‑ATTTTTAATTTTTAAAAAT‑TT‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAat < 2:3732485/128‑1 (MQ=255) attcaaaa‑TTTTAAAA‑AATTA‑ATTTGTAAATTTAAAAAATA‑‑‑TCTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAatat < 1:2208898/123‑1 (MQ=255) aaa‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTATGTATTTTTTTTTTTAAGTATATAAAAAAATATAAAGAAAAAAatatat > 1:3584810/1‑126 (MQ=255) aaa‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑TTTTTTTTTTTTTTTTTTATAATGAAAATTAAAATTTTATTTATTTTTTTTTATAATTATATAAAAAAATAAAAAGAAAAAAATAtttt > 2:1279003/1‑126 (MQ=255) aaa‑TTTTTAAAAAATTA‑ATTTGAACTTGTAAAAAATAGC‑‑‑TTTTTTTTTTTTTTTTTATAATTTAAATATAAATTTTATATTTTTTTTTTTATAAATATATAAAAAAATATAATTAAAAAAATATtttt > 1:38935/1‑128 (MQ=255) | TATTTACTTTAATTGTATTACTTTACTAGTTGATAATATTTAGTTTCATTAATTTATCGCACTTGTATGAATTAGTAAGAAACTAAAACTATTATCTTTTTAGATATTTTTTGTATA‑TGCAAA‑TTTTAAAAGAATTA‑ATTTGAACTTGTAAAAAATAGC‑TTTTTTTTTTTTTTTTTTTATAATGGAAATATAAATTTTAGGTATTTTGTTGTCTAAGTATCTAAAAAAATAGAAAGGAAAAAATATTGTTAAAA > CP016816/165091‑165344 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |