New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 202483150 (0.100)235 (0.150) 52/252 31.9 62.0% intergenic (+261/‑414) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
?CP016816 202487 = 138 (0.090)intergenic (+265/‑410) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 328 total aligned reads displayed.

AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGT‑TTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTA  >  CP016816/202369‑202614
                                                                                                                         |                                                                                                                                 
  tattaGAGTTAAGGTTTATTAAAATACCATAAACTTAATTATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGT‑TTATCTT‑CACAAAT‑AAAAAATAAACAATCAC‑‑Attaaaa‑att‑aaaaa                                                                                                                    >  1:2618536/4‑128 (MQ=255)
  taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTT‑TTATCTT‑CACAAAT‑AAAAAAAAAAAAAAACCC‑‑ttaaaa‑att‑aaaaa                                                                                                                    >  1:3296761/1‑128 (MQ=255)
   aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGT‑TTATCTT‑CACAAAT‑AAAAAAAAAACAAACCAC‑‑Ttaaaa‑att‑aaaaaa                                                                                                                   >  2:2620495/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGT‑TTATCTT‑CACAAAT‑AAAAAAAAAACAATCCC‑‑AATAAAA‑AAT‑aaaaaaaa                                                                                                                 >  2:1761662/1‑128 (MQ=255)
     taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCTTGATCTATTTTTTTATATAT‑ATATCAT‑CACAAAT‑AAAAAAAAAA‑AAAATCAACTTAAAA‑AAT‑aaaaaaa                                                                                                                  >  2:449136/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTT‑TTATCTT‑CACAAAT‑AAAAAAAAAAAAATACC‑‑AATAAAA‑ATT‑aaaaaaaaaaaaa                                                                                                            >  1:903937/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGT‑TTATCTT‑CAAAAAT‑AAAAAAAAAACAATCCC‑‑‑ATAAAA‑AAT‑aaaaaaaaaaaaaa                                                                                                           >  1:1054519/1‑128 (MQ=255)
          ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGT‑TTATCTT‑CAAAAAT‑AAAAAAAAAACAAT‑‑CCAATTAAAA‑ATT‑aaaaaaaaaaaaa                                                                                                            >  2:3050499/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTT‑TTATCTT‑CACAAAA‑AAAAAAAAAAAAATCAAC‑‑‑TAAAA‑AAT‑aaaaaaaaaaaaaaa                                                                                                          >  1:1878412/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTGT‑TTATCTT‑CACAAAT‑AAAAAAAAAACAATCAAC‑‑TTAAAA‑AAT‑aaaaaaaaaaaaaa                                                                                                           >  1:1179594/1‑128 (MQ=255)
           tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTATTTGT‑TTATCTT‑CACAAAA‑AAAAAAAAAAAAAACAAC‑‑TAAAAA‑AAT‑aaaaaaaaaaaaaa                                                                                                           >  1:1752800/1‑128 (MQ=255)
            aattttaattaaAATAAAATAAAATTAATAATTCTTATAATTTATATCCTTTTTATCATTTTTTTTTTTTGT‑TTATTTT‑CACAAAT‑AAAAAAAAAA‑AATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaa                                                                                                         <  1:1951399/124‑1 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGT‑TTATCTT‑CACAAAT‑AAAAAAAAAACAATCCAC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaa                                                                                                          >  2:2800029/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGT‑TTATCTT‑CACAAAT‑AAAAAAAAAACAATCCAC‑‑TTAAAA‑AAT‑aaaaaaaaaaaaaaa                                                                                                          >  2:2581794/1‑128 (MQ=255)
            aaGGTTAATTAAAATACCATAAACTTAAT‑ATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGT‑TTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaa                                                                                                         >  1:2813746/1‑128 (MQ=255)
              gttaataaaaaaTACTTAAAATTTAATATTTTTTA‑AATTTTGATCCACGTGTTTTTTTTTTTTTTTTTT‑TTAATTT‑CCAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                                       <  1:3039593/120‑1 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATCCTCTTTATCTATAATTTTATATAT‑ATAAATT‑CACAAAA‑AAAAAAAAAAAAAAAAC‑‑‑ATAAAA‑AAT‑aaaaaaaaaaaaaaaaaa                                                                                                       >  1:67031/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGT‑TTATCTT‑CACAAATAAAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaa                                                                                                         >  2:2727340/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGT‑TTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaa                                                                                                        >  2:2692822/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTCATCTATTTTTTTATTTGT‑TTATCTT‑CACAAAT‑AAAAAAAAAACAAACCCATT‑‑‑AAA‑AAT‑aaaaaaaaaaaaaaaaaa                                                                                                       >  2:383843/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCACGAGATCTATTTTTTTATATCT‑TTATCTT‑CACAAAA‑AAAAAAAAAACAATCCACaaaaaaaa‑aaa‑aaaaaaaaaaaaaaa                                                                                                          >  1:3101567/1‑128 (MQ=255)
              ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCTTGATCTATTTATTTATTTGT‑TTATCTT‑CACAAAT‑AAAAAAAAAACAATCAC‑‑‑ATAAAA‑AAT‑taaaaaaaaaaaaaaaaa                                                                                                       >  2:2707208/1‑128 (MQ=255)
               tttaaataaAAAAAAATAAAATTAAAAATTTTTAAAATTTATATACTCTTTTTATATTTTTTTTTTTTT‑TTATATT‑AAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                                       <  2:2758206/127‑1 (MQ=255)
               tgtaattaaATAACCATAAACATAATAAATTTATTAATGTAGTGCCGTGTGTTATTTTTTTTTATTTTT‑TTTTTTT‑TAAAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAAAA‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                                       <  1:2794427/126‑1 (MQ=255)
                tttattaaAATAAAAAAAAATTAATAATTATTATAATTTATATCATCGTGTTTTATTTTTTTATTTTT‑TTATATT‑AACAAAA‑AAAAAAAAAACAAAACCCTTT‑‑AAA‑ATT‑aaaaaaaaaaaaaaaaaaa                                                                                                      <  2:2888397/125‑1 (MQ=255)
                ttaatttaAAAAACATAAAATTAAAAATTATTATAATTTATATCCTCTTTAATTTTTTTTTTATTTTT‑TTATATTAAAAAAAA‑AAAAAAAAAACAAACCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                                       <  2:241237/128‑1 (MQ=255)
                gttattaaAAAAACATTAAATTAATAAATAATATAATTTATAACCTATTGAAATATTTTTTTATTTTT‑TTATCAT‑CAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑AAT‑aaaaaaaaaaaaaaaaaaa                                                                                                      <  2:1462272/125‑1 (MQ=255)
                 taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTAATTTATAATTTTA‑ATATATA‑CACAAAA‑AAAAAAAAAACAAACCAC‑‑ATAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaa                                                                                                     >  1:27357/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGT‑TTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                    >  1:2539493/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGT‑TTATCTT‑CACAAAT‑AAAAAAAAAACAAACACATTAAAAAT‑aaa‑aaaaaaaaaaaaaaaaaaa                                                                                                      >  1:2681280/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGT‑TTATCTT‑CACAAAT‑AAAAAAAAAAAAATAAC‑‑ATAAAAA‑ATT‑aaaaaaaaaaaaaaaaaaaaa                                                                                                    >  1:1504950/1‑128 (MQ=255)
                  aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATAATAGTGATCTATTTTTTTATTTTT‑TTATCTA‑AACAAAT‑AAAAAAAAAAAAATAAC‑‑‑AAAAAA‑AAT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  2:944153/1‑127 (MQ=255)
                   attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTTATCTATTTTTTTATTTGT‑TTATCTT‑CAAAAAT‑AAAAAAAAAAAAAT‑‑CAAATAAAAA‑AAT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                                   >  2:178224/1‑127 (MQ=255)
                   attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGT‑TTATCTT‑CACAAAT‑AAAAAAAAAACAATCCACTTAAAAAT‑TAT‑aaaaaaaaaaaaaaaaaaaa                                                                                                     >  2:418402/1‑128 (MQ=255)
                      atattaacATAAAATTAATAATTTTAATAAATAATATCAACGTTTTCTATTTTTTTTTTTGT‑TTTACTT‑CCCAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTaaa                                                                                               <  2:1283609/121‑1 (MQ=255)
                      aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGT‑TTATCTT‑CACAAAT‑AAAAAAAAAACAAACCACATAAAAAT‑aaa‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  1:783334/1‑126 (MQ=255)
                       aaaaaaaaaaaaaTTAATAATTTTTAAAATTTATAACCTCTTTAATTATTTTTTTATTTTT‑TATTTTT‑TAAAAAA‑AAAAAAAAAAAAAACCCATTAAAAAT‑TAA‑AAAAAAAAAAAAAAAAAAAAACTa                                                                                                 <  1:716904/119‑1 (MQ=255)
                        aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGT‑TTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑Aaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                              >  1:3163808/1‑128 (MQ=255)
                         aataaaTAAAATTAATAATTAATATAATTTATATCATCGTTATATATTTTTTTTTTTTT‑TTTAATT‑CAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                            <  2:1120595/123‑1 (MQ=255)
                          aacaaTAAACTTAATAATTATTAAAATTTATATACTATTTTATTAATTTTTTATTTTT‑TTAAATA‑AAAAAAA‑AAAAAAAAAAAAATCCCCAT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                           <  2:227749/124‑1 (MQ=255)
                                  aattAAAAATTCTTATAATTTCTCACCCCCCGATCTATTTTTTTATTTTT‑TTATATT‑AAAAAAA‑AAAAAAAAAACAAACCCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                    <  2:1436751/126‑1 (MQ=255)
                                        taatTATTATAATTTATAAACACGTTATCTATTTTTTTATTTTT‑TTATATT‑CAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑AAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                             <  2:3285272/128‑1 (MQ=255)
                                         aaattttATAAATTACATCCTCGTTATATATTTTTTTATTTTT‑TTATATA‑AAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                             <  2:3140574/123‑1 (MQ=255)
                                                  aatttttataatCGTGTTATATTTTTTTTATTTT‑TTATATT‑AAAAAAA‑AAAAAAAAAAAAATACCC‑‑ATAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCt                                                                    <  2:3250725/117‑1 (MQ=255)
                                                        taaccTCGTTTTTTATTTTTTTATTTTT‑TTATTAT‑AAAAAAA‑AAAAAAAAAAAAAACCCC‑‑ATAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                              <  1:3077460/125‑1 (MQ=255)
                                                        aatacttttGATATATTTTTTTTATTTT‑TTAAATT‑‑AAAAAA‑AAAAAAAAAAAAAAACCCATAAAAAT‑TAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                               <  2:1664829/120‑1 (MQ=255)
                                                         atcaactttttttatttttttattttt‑tTATCTT‑CAAAAAT‑AAAAAAAAAACAATCCCC‑TTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                              <  2:3169814/116‑1 (MQ=255)
                                                          tattatttatttATTTTTTTAATTTT‑TTATATT‑AAAAAAA‑AAAAAAAAAAAAAACAC‑‑TTTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                            <  2:1958049/117‑1 (MQ=255)
                                                          atcttgttttatatttttttattttt‑tTAAATT‑AACAAAA‑AAAAAAAAAAAAAAACCC‑TTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                             <  2:1917808/117‑1 (MQ=255)
                                                           tcttgttttatATTTTTTTTTTTTT‑TTTTATT‑AAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                           <  1:289983/118‑1 (MQ=255)
                                                           ctctgtataaaaTTTTTTTATTT‑T‑TTATATT‑AAAAAAA‑AAAAAAAAAAAAATCCAC‑TTAAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAccg                                                           <  2:852881/117‑2 (MQ=255)
                                                           actatttttatatttttttattttt‑tTATATT‑AAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                           <  2:468790/118‑1 (MQ=255)
                                                            cTCGTGATC‑ATTTTTTTTTTTTT‑TTTTATT‑AAAAAAA‑AAAAAAAAAAAAAAAAACCCTTTAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                           <  2:1828462/128‑1 (MQ=255)
                                                             tcttGATATATTTTATTATTTTT‑TTTACAT‑AAAAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                                         <  2:608711/125‑1 (MQ=255)
                                                             acgttaaaaaTTTTTTTATTT‑T‑TTAAATT‑AAAAAAA‑AAAAAAAAAAAAAAACCAAT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                       <  2:2451754/119‑1 (MQ=255)
                                                                  tttttttttttttttttt‑tTATTTT‑TAAAAAA‑AAAAAAAAAAAAAATCCC‑TTTAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                     <  1:2861835/123‑1 (MQ=255)
                                                                    tattttttttATTT‑T‑TTATATT‑TACAAAT‑AAAAAAAAAA‑AATCCCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                <  2:1618725/125‑1 (MQ=255)
                                                                    atatttttttattttt‑tTAAATT‑AAAAAAA‑AAAAAAAAAAAAATACCC‑‑ATAAAA‑AAT‑‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                <  1:3011797/127‑1 (MQ=255)
                                                                     aaTTTTTTTAATTTT‑TTATATT‑AAAAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                <  2:34613/127‑1 (MQ=255)
                                                                      tattttttATTTTTATTATATT‑AAAAAAT‑AAAAAAAAAAAAAAACCCATT‑‑AAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttattt                                                 <  2:527630/126‑1 (MQ=255)
                                                                      atttttttattttt‑ttATTTT‑AAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAA‑AAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                              <  1:2460813/128‑1 (MQ=255)
                                                                      attattTTATATTT‑TTATTTT‑AAAAAAA‑AAAAAAAAAACAATTCCATT‑‑‑AAA‑AAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                              <  2:1466944/128‑1 (MQ=255)
                                                                      aTTTTTTTATTTGT‑TTATTTT‑AAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                <  1:2880068/128‑1 (MQ=255)
                                                                       ttttttttttttt‑tttTAAT‑AAAAAAA‑AAAAAAAAAAAAATCCC‑‑ATTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                               <  2:704445/128‑1 (MQ=255)
                                                                       tttttttattttt‑ttaTATT‑CACAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                               <  2:2525480/128‑1 (MQ=255)
                                                                       tttttttAATTTT‑TTATTTT‑TA‑AAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAA‑AAT‑‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaaa                                           <  1:25313/128‑1 (MQ=255)
                                                                        ttttttATTTTT‑TTA‑AAT‑AAAAAAA‑AAAAAAAAAAAAATCCCC‑TTAAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                              <  1:69777/128‑1 (MQ=255)
                                                                         ttttttttttt‑tTATATT‑AAAAAAA‑AAAAAAAAAACAATCGCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                             <  1:2723145/128‑1 (MQ=255)
                                                                           tttATTTTT‑TTATTAT‑AAAAAAA‑AAAAAAAAAAAAATCCCCTTAAAAAT‑TAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                             <  2:2328571/128‑1 (MQ=255)
                                                                            ttATTTTT‑TTATATA‑AAAAAAT‑AAAAAAAAAAAAATAACC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                          <  2:962848/128‑1 (MQ=255)
                                                                             tATTTTT‑TTATTAT‑TAAAAAA‑AAAAAAAAAAAAAAACCATTT‑‑AAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAATAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                         <  2:1179551/128‑1 (MQ=255)
                                                                              tttttt‑tTATTTT‑AAAAAAA‑AAAAAAAAAAAAAAAACC‑‑TTAAAA‑ATT‑ATAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                        <  2:2033534/127‑1 (MQ=255)
                                                                               ttttt‑tTATTTA‑AACAAA‑‑AAAAAAAAAAAAAAAACCAATAAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                        <  1:2572127/128‑1 (MQ=255)
                                                                                  ttttaaaatt‑CAAAAAT‑AAAAAAAAAAAAAAACCC‑‑TTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGat                                     <  2:785214/120‑1 (MQ=255)
                                                                                  tttatATCTT‑CAAAAAT‑AAAAAAAAAAAAAACTCC‑‑ATAAAA‑ATT‑TAAAAAAAAAAAAAAATAAAACTAAAAACAAACTCTATTTCTTAAAATTCCATATTATACCACATTTTATTTTTAAAATAAGat                                     <  2:579669/124‑1 (MQ=255)
                                                                                     ttATCTT‑CACAAATAAAAAAAAAAACAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAAATAAAAA‑AAACATTATTTTTTAAAATTGACTATTTTAAAAAATTTTTTTTTTAAAAAAATATAtt                                  >  2:2935366/1‑128 (MQ=255)
                                                                                      tttaaataaaaaaT‑AAAAAAAAAAAAAAAACCTTAAAAAT‑TAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                    <  2:2961128/118‑1 (MQ=255)
                                                                                      ttatataaaaaaaa‑aaaaaaaaaaaaATACCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                  <  2:1443208/118‑1 (MQ=255)
                                                                                       taaaattaaaaaa‑aaaaaaaaaaaaATACCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                <  2:3021972/119‑1 (MQ=255)
                                                                                       taaaataaaaaaa‑aaaaaaaaaaaaATACCC‑TTAAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                  <  2:685879/119‑1 (MQ=255)
                                                                                        attttaacaAAT‑AAAAAAAAAAAAATACCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                <  2:2196048/122‑1 (MQ=255)
                                                                                          atataaaaaa‑aaaaaaaaaaaaaaaaCCCATAAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                                <  1:1397449/122‑1 (MQ=255)
                                                                                            tacaaaaa‑aaaaaaaaaaaaATACCAATAAAAAATAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                               <  1:2170782/124‑1 (MQ=255)
                                                                                            taaaaaaa‑aaaaaaaaaaATAAACCCTTTAAAAA‑TAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                              <  2:1054519/124‑1 (MQ=255)
                                                                                               aaaaa‑aaaaaaaaaaaaaaACCCA‑‑TAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                          <  1:383668/127‑1 (MQ=255)
                                                                                                aaaa‑aaaaaaaaaaaaATCAAATTATAAAT‑TA‑‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                         <  2:1732040/128‑1 (MQ=255)
                                                                                                 aaT‑AAAAAAAAAACTATAACATTT‑‑AAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                       <  2:2360018/128‑1 (MQ=255)
                                                                                                   attaaaaaaaaaCAATCCCATT‑‑‑AAA‑AAT‑‑ATAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatatat                    <  1:2492272/125‑1 (MQ=255)
                                                                                                    aaaaaaaaaaaaaaaACCCCTTAAAAA‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                       <  2:755919/127‑1 (MQ=255)
                                                                                                     aaaaaaaaaaaaATCCCCTT‑‑‑AAA‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                   <  2:1878412/128‑1 (MQ=255)
                                                                                                       aaaaaaaaCAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAACCTAAAAACAAACAATATTTATTAAAATTCCCTATTAAACCACATTTTATTTTTAAAATAATATTTTTAAATAatatatatat                  >  1:322828/1‑126 (MQ=255)
                                                                                                            aaaCAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAA‑AAAAAACAAACACAATTAATTAAAATTCCATATTATACCACATTTTATTTTTAAAAAAAAAAATTGACAAAATtaatatataatata            >  2:3185941/1‑128 (MQ=255)
                                                                                                             aaaaaaataacattAAAA‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAata              <  2:190113/116‑1 (MQ=255)
                                                                                                               cAATCCCC‑‑TTAAAA‑ATT‑AAAAAAAAGAAAAAAAAAAAAATAAAAACAAACGCTATTTATTAAATTTCCCTATTATACACCATTTTATTTTTAAAATAAGATATTGACATAATAAATATataataaaaa          >  2:2843542/1‑124 (MQ=255)
                                                                                                                  aatccccttaaaa‑attaaaaaAAAAAAAAAAAAAAAAAATAAAAACAAACAATATTAATTAAATTTACAAATTAAAAACAAATTTATTTTTAAAATAAAATTTTAAAAAAATATAAATAAAatattta          >  1:3323772/8‑128 (MQ=255)
                                                                                                                  aaactaattAAAA‑ATT‑TAAAAAAAAAAAAAAATAAAACTAAAAACAAACTCTATTTATTAAAATTCCATATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat         <  1:1716292/121‑1 (MQ=255)
                                                                                                                   acaaatttAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAAGTCTATTTCTTAAAATTACATATTATAACACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata        <  2:2091108/123‑1 (MQ=255)
                                                                                                                       tttaAAAA‑TAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc    <  2:1261260/128‑1 (MQ=255)
                                                                                                                        ttttAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACt   <  2:1561484/128‑1 (MQ=255)
                                                                                                                        tttAAAA‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACt   <  1:2937134/128‑1 (MQ=255)
                                                                                                                         |                                                                                                                                 
AATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGT‑TTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAA‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTA  >  CP016816/202369‑202614

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.