Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4770CA46.5% 245.3 / 166.5 373intergenic (+255/‑420)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (122/74);  new base A (32/138);  total (156/217)
Fisher's exact test for biased strand distribution p-value = 1.48e-17
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 430 total aligned reads displayed.

AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑A‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATA  >  CP016816/202350‑202604
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aagtaGTGTAGTTAGTTTAAATAATTGTTTTAAGGTTAATTAAAATACAAT‑AAAATTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAAc                                                                                                                                    <  1:575358/128‑1 (MQ=255)
aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAAc                                                                                                                                    <  1:910457/128‑1 (MQ=255)
aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAAc                                                                                                                                    <  2:871759/128‑1 (MQ=255)
aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAAAAT‑AAACTTAATAATTCTTATAATGTAGATACTCTTGATCTATTATATTATTTTTTTATCTT‑AACAAAT‑AAAAAAAAAAc                                                                                                                                    >  2:2460813/1‑128 (MQ=255)
  gtagtGAAGTTAGTTTAAATAATAGAGTTAAGTTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACaa                                                                                                                                  <  2:1078936/128‑1 (MQ=255)
   tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAAt                                                                                                                                 <  2:613888/128‑1 (MQ=255)
    attGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATc                                                                                                                                <  1:3156154/126‑1 (MQ=255)
    agttaagttaGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATc                                                                                                                                <  2:2505338/128‑1 (MQ=255)
    agtGAATTTAGTGTAAATAATATAGTTAAGGTTAATTAAAATACAAT‑AAACTTAATTATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATc                                                                                                                                <  1:1028063/128‑1 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGTTTAATTAAAATACCAT‑AAACTAAATAAATATTATAAATTATATAATAATTATCTATAATTTTATTTATTTATATT‑AAAAAAT‑Aaaaaaaaaaaaaaa                                                                                                                                >  1:111158/1‑126 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATc                                                                                                                                >  2:2896286/1‑128 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATc                                                                                                                                >  1:3117247/1‑128 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATTTATCTT‑CACAaaa‑aaaaaaaaaaaaaaa                                                                                                                                >  1:1662004/1‑126 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATAATTATATTTATTTATCTT‑CACAAAT‑AAAAAAAAAACAATc                                                                                                                                >  2:3269201/1‑128 (MQ=255)
    agtGAAGTTAGGGTTAATAATTGCGTTAATGTTAAATAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAATACAATc                                                                                                                                <  1:1418325/128‑1 (MQ=255)
     gtGAAGTTATTTTAAATACTAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATcc                                                                                                                               <  2:3240911/128‑1 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAAAGTAGATCCTCTTGATCTATTTTTTTATTTCTTTATCTT‑CACAAAT‑AAAAAAAAAACAAtaa                                                                                                                               >  1:1198610/1‑126 (MQ=255)
     ctgtaGTTAGTGTAAATAATATAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATcc                                                                                                                               <  2:3041796/124‑1 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATTTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAAAAATacc                                                                                                                              >  1:2190613/1‑128 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTATATTATATTATAATATT‑CACAAAT‑AAAAAAAAAAAAAtaca                                                                                                                              >  1:1248244/1‑125 (MQ=255)
        aaGTTCTTGTAAATAATAGAGGTTAGGTTTATTTAAATACCAT‑AAACTTAAAAATTCATAAAATGTACAACCTCCTGATCTATTTTTTTTTTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCt                                                                                                                            <  2:2254385/128‑1 (MQ=255)
        aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCt                                                                                                                            <  1:1936041/128‑1 (MQ=255)
        aaGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAAATCTAATAATAAAAATCCTCAAAATCTATAAAATTATAAATATAACAT‑CACAAAT‑Aaaaaaaaaaaaaaaccaa                                                                                                                            >  1:2026179/1‑122 (MQ=255)
         aGTTATTTTAAATTAAATAGTTAATGTTAATTAAAATAACAT‑AAACTTTATAATTCATATAAAGTAGTTACTAGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                           <  2:259643/128‑1 (MQ=255)
         aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                           <  1:436633/128‑1 (MQ=255)
         aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCtt                                                                                                                           <  2:2117023/128‑1 (MQ=255)
         aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCATCTTGATCTATTTTTTTATTATTTTATATT‑CAAAAAT‑AAAAAAAAAAAAAAcccaaa                                                                                                                           >  1:1883145/1‑125 (MQ=255)
          gTTATTGTAAATAATATAGTATAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGAACCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                          <  2:700084/128‑2 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTATTTATTTGTTTATCTT‑AAAAAAT‑Aaaaaaaaaaaaaaaaaataa                                                                                                                          >  1:1550335/1‑120 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTATATCATCTTAAACTATAATTATAAATTATAATATA‑AACAAAT‑Aaaaaaaaaaaaaaaaaaaaa                                                                                                                          >  1:2448494/1‑120 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTAATATGTATATCAT‑CACAAAT‑‑AAAAAAAAACAATCACCttaaa                                                                                                                        >  1:2757621/1‑125 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTAATATATCTT‑CACAAAT‑AAAAAAAAAACAAACCCAttaa                                                                                                                         >  1:292350/1‑126 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAAATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATcacattaa                                                                                                                         >  1:3041245/1‑121 (MQ=255)
           ttAGGGTAAATAATAGAGTTAAGGTTAATTAAAATAACAT‑AAACTTAATAATTATTATAATGTAGATCCTCGTGTTCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCttaa                                                                                                                         <  1:2117883/128‑3 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑Aaaaaaaaaaaaaaaccataaaaa                                                                                                                       >  1:2941342/1‑117 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGAACTATTATTTTATTTGTATATCTT‑AAAAAAA‑AAAAAAAAAAAAATcacattaaaa                                                                                                                       >  2:1241901/1‑119 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAA‑AAACTTAATAATTCTTATAATGTATATCCTCGTTATCTATATTTTTATTTAATAATCTT‑AACAAAT‑AAAAAAAAAACaaaaaaaataaaa                                                                                                                       >  1:1455880/1‑117 (MQ=255)
              gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAAACACCtaaaaaa                                                                                                                      >  2:2743476/1‑122 (MQ=255)
              gtgtAAATAATAGAGTTAAGGTAAATTAAAATACCAT‑AAACTTAATAAATCTTATAATTTAGATCCTCTTGATCTATTTTTTTATATATTTATATT‑AACAAAT‑Aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                                      >  1:659849/1‑116 (MQ=255)
                 tAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCAttaaatatta                                                                                                                   >  2:2558696/1‑120 (MQ=255)
                   aataatAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCttaaaaataaaa                                                                                                                 >  1:2978128/1‑118 (MQ=255)
                     tattaGAGTTAAGGTTTATTAAAATACCAT‑AAACTTAATTATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAATAAACAATCAC‑‑Attaaa‑a‑att‑aaaaa                                                                                                          >  1:2618536/4‑128 (MQ=255)
                     taataGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTT‑CACAAAA‑AAAAAAAAAACAATCACC‑‑ttaaa‑a‑att‑aaaaa                                                                                                          >  2:2870174/1‑128 (MQ=255)
                      aataGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAAACCAC‑‑Ttaaa‑a‑att‑aaaaaa                                                                                                         >  2:2620495/1‑128 (MQ=255)
                        taGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCC‑‑AATAAA‑A‑AAT‑aaaaaaaa                                                                                                       >  2:1761662/1‑128 (MQ=255)
                            gTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaaaaa                                                                                                   >  1:2483325/1‑128 (MQ=255)
                              tAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATATTTTTATTTGTTTATCTT‑CACAAAA‑AAAAAAAAAAAAAACAAC‑‑TAAAA‑A‑AAT‑aaaaaaaaaaaaaa                                                                                                 >  1:1752800/1‑128 (MQ=255)
                              tAAGGTTAATTAAAATACCAT‑AAACTTAATAATTATTATAATGTAGATACTCTTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAAAAAAC‑‑‑TAAA‑A‑AAT‑taaaaaaaaaaaaaa                                                                                                >  2:754908/1‑128 (MQ=255)
                               taGGTTAATTAAAAATCAATAAAATTTAATAA‑TCTTATAAACTACAACCCCGTTATCTATTTTTTTATTTTTTTATCTT‑AAAAAAA‑AAAAAAAAAACAATCCCCTTT‑‑AA‑A‑ATT‑aaaaaaaaaaaaaaa                                                                                                <  2:1855355/127‑1 (MQ=255)
                                 ggTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑A‑ATT‑aaaaaaaaaaaaaaaaa                                                                                              >  2:2684617/1‑128 (MQ=255)
                                 ggTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATACTCTTGATCTATTTATTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCAC‑‑‑ATAAA‑A‑AAT‑taaaaaaaaaaaaaaaaa                                                                                             >  2:2707208/1‑128 (MQ=255)
                                  tttaattaaAAAACCAA‑AAAAATAAAAATTTTTTTAATTTATATACTTTTTATCTTTTTTTTTTTTTTTTTTATTT‑AAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                             <  1:3299482/127‑1 (MQ=255)
                                  tttaaataaAAAAAAAT‑AAAATTAAAAATTTTTAAAATTTATATACTCTTTTTATATTTTTTTTTTTTTTTATATT‑AAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                             <  2:2758206/127‑1 (MQ=255)
                                  gTTAATTAAAAAACCAT‑AAAATTAATAAATATTATAAATTCTACCCTCGTGATTTTTTTTTTTTTTTGTTTATTTT‑AAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                             <  1:3086596/128‑1 (MQ=255)
                                   ttaatttaAAAAACAT‑AAAATTAAAAATTATTATAATTTATATCCTCTTTAATTTTTTTTTTATTTTTTTATATTAAAAAAAA‑AAAAAAAAAACAAACCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaaaaaaaaaaa                                                                                             <  2:241237/128‑1 (MQ=255)
                                    taattaaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTAATTTATAATTTTAATATATA‑CACAAAA‑AAAAAAAAAACAAACCAC‑‑ATAAA‑A‑ATT‑aaaaaaaaaaaaaaaaaaaa                                                                                           >  1:27357/1‑128 (MQ=255)
                                     aattaaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                          <  2:320236/101‑2 (MQ=255)
                                     aattaaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAAACACATTAAAAA‑T‑aaa‑aaaaaaaaaaaaaaaaaaa                                                                                            >  1:2681280/1‑128 (MQ=255)
                                      attaaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCTTTATCTATTTTTTTATTTGTTTATCTT‑CAAAAAT‑AAAAAAAAAAAAAT‑‑CAAATAAAA‑A‑AAT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                         >  2:178224/1‑127 (MQ=255)
                                       tttaaaTATAAT‑AAAATTAATAATTATTTTAATTTATATCCTCGTTATCTATTTTTTTTTTTTTTTATTTT‑AACAAAA‑AAAAAAAAAACAAAACCC‑‑TTAAA‑A‑ATT‑aaaaaaaaaaaaaaaaaaaaaac                                                                                        <  2:2026179/125‑3 (MQ=255)
                                        taaAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAAAAATAAC‑‑AATAAA‑A‑AAT‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                       >  2:383668/1‑125 (MQ=255)
                                        taaAATAACAA‑AAAATTAAAAAATCTTATAATTTATTTCCTTGTTTAATATTTTTTTATTTTTTTATATT‑AAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTa                                                                                       <  1:2887794/128‑1 (MQ=255)
                                         aaaaTACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAAACCACATAAAAA‑T‑aaa‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  1:783334/1‑126 (MQ=255)
                                         aaaaTACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAAAAAT‑‑ACAATTAAA‑A‑ATT‑aaaaaaaaaaaaaaaaaaaaaaaaa                                                                                      >  2:834486/1‑124 (MQ=255)
                                         aaaaTAAAAA‑AAAATTAATAATTTTTATAATTTTTATCCTCGTTTTTTTTTTTTTTTTTTTTTTATATT‑AAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑A‑ATT‑aaaaaaaaaaaaaaaaaaaaaacta                                                                                      <  1:3235256/128‑5 (MQ=255)
                                           aataaaaT‑AAAATTAATAATTTTTATAATTTTTATAATAGTGTTATTTTTTTTTATTTGTTTATCTT‑TAAAAAA‑AAAAAAAAAAAAATCCCCTTAAAAA‑T‑TAA‑AAAAAAAAAAAAAAAAAAAAACTaa                                                                                      <  1:2565354/122‑1 (MQ=255)
                                           aaaaaaaaaaaaaTTAATAATTTTTAAAATTTATAACCTCTTTAATTATTTTTTTATTTTTTATTTTT‑TAAAAAA‑AAAAAAAAAAAAAACCCATTAAAAA‑T‑TAA‑AAAAAAAAAAAAAAAAAAAAACTa                                                                                       <  1:716904/119‑1 (MQ=255)
                                            aataaaT‑AAAATTAATAATTAATATAATTTATATCATCGTTATATATTTTTTTTTTTTTTTTAATT‑CAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AA‑A‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                  <  2:1120595/123‑1 (MQ=255)
                                                       ataaataatTATTAAAATTTACATACACTTTATAAATATTTTTATTTTTTTATAAT‑AAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑A‑AAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAttt                                                                       <  2:520378/125‑1 (MQ=255)
                                                            taatTCTTATAATTTAGATTCACTTGATATATTTTTTAATTTGTTAATATT‑CAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TAAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCtt                                                                    <  2:307447/128‑1 (MQ=255)
                                                             aatTTTTATAATTTATTTCCTCGTTAATTATTTTTTTATTTTTTTATATT‑AAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                   <  1:2504532/128‑1 (MQ=255)
                                                                       atgttttttatCGTTATTTTTTTTTTTTTTTTTTTTTATT‑AAAAAAT‑AAAAAAAAAAAAATCCC‑‑ATTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAGAAAACTAAAAACAAACTCTATTTCTTAAAATTACCta                                                         <  1:281244/118‑1 (MQ=255)
                                                                             atcaactttttttatttttttattttttTATCTT‑CAAAAAT‑AAAAAAAAAACAATCCCC‑TTAAAA‑A‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                    <  2:3169814/116‑1 (MQ=255)
                                                                              tactcttgttatatttttttattttttTATATT‑AACAAAA‑AAAAAAAAAAAAAAAACC‑TTAAAA‑A‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                   <  1:3193475/117‑1 (MQ=255)
                                                                              tCCTCTTTATATATTTTTTTATTTGTTAAGATT‑‑AAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTGAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                 <  2:1664044/128‑1 (MQ=255)
                                                                                ctctttttatATTTTTTTTTTTTTTTATATT‑CAAAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                <  2:1901750/119‑1 (MQ=255)
                                                                                      tttttttttttttttttttTATTTT‑TAAAAAA‑AAAAAAAAAAAAAATCCC‑TTTAAA‑A‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                           <  1:2861835/123‑1 (MQ=255)
                                                                                         tatttttttattttttTATTAT‑AACAAAA‑AAAAAAAAAAAAAAAACCTTAAAAATT‑AAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                          <  2:1595783/128‑1 (MQ=255)
                                                                                          attattTTATATTTTTATTTT‑AAAAAAA‑AAAAAAAAAACAATTCCATT‑‑‑AA‑A‑AAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                    <  2:1466944/128‑1 (MQ=255)
                                                                                            ttttttATTTTTTTAATAT‑AAAAAAA‑AAAAAAAAAAAAAT‑‑ACAATAAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                    <  2:1302584/128‑1 (MQ=255)
                                                                                            ttttttATTTTTTTA‑AAT‑AAAAAAA‑AAAAAAAAAAAAATCCCC‑TTAAAA‑A‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                    <  1:69777/128‑1 (MQ=255)
                                                                                             tttttATTTTTTTATATT‑AAAAAAT‑AAAAAAAAATATATCAAC‑‑TTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                   <  2:1931700/128‑1 (MQ=255)
                                                                                               tttATTTTTTTATTAT‑AAAAAAA‑AAAAAAAAAAAAATCCCCTTAAAAA‑T‑TAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                   <  2:2328571/128‑1 (MQ=255)
                                                                                                 tATTTTTTTATTAT‑TAAAAAA‑AAAAAAAAAAAAAAACCATTT‑‑AA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAATAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                               <  2:1179551/128‑1 (MQ=255)
                                                                                                     tttatATCTT‑CAAAAAT‑AAAAAAAAAAAAAACTCC‑‑ATAAA‑A‑ATT‑TAAAAAAAAAAAAAAATAAAACTAAAAACAAACTCTATTTCTTAAAATTCCATATTATACCACATTTTATTTTTAAAATAAGat                           <  2:579669/124‑1 (MQ=255)
                                                                                                        ttATCTT‑CACAAATAAAAAAAAAAACAATCCCC‑‑TTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAAATAAAAA‑AAACATTATTTTTTAAAATTGACTATTTTAAAAAATTTTTTTTTTAAAAAAATATAtt                        >  2:2935366/1‑128 (MQ=255)
                                                                                                         ttatataaaaaaaa‑aaaaaaaaaaaaATACCC‑‑TTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                        <  2:1443208/118‑1 (MQ=255)
                                                                                                          taaaattaaaaaa‑aaaaaaaaaaaaATACCCTT‑‑‑AA‑A‑AAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                      <  2:3021972/119‑1 (MQ=255)
                                                                                                          taaaataaaaaaa‑aaaaaaaaaaaaATACCC‑TTAAAA‑A‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                        <  2:685879/119‑1 (MQ=255)
                                                                                                           attttaacaAAT‑AAAAAAAAAAAAATACCC‑‑TTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                      <  2:2196048/122‑1 (MQ=255)
                                                                                                           atattaaaaaaT‑AAAAAAAAAAAAATACAC‑TTTAAA‑A‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                       <  2:458643/120‑1 (MQ=255)
                                                                                                              ataaaaaaa‑aaaaaaaaaaaaATCCCC‑TTAAAA‑A‑ATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                    <  2:407791/123‑1 (MQ=255)
                                                                                                                  caAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑A‑AAT‑‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACAATATTTATTAAAATACCATTTTAAACCACATTTTATTTTTAAAATAAGATATTGAAAAaataaata           >  2:2809729/1‑128 (MQ=255)
                                                                                                                  aaaaa‑aaaaaaaaaaaaaaACCCA‑‑TAAA‑A‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                <  1:383668/127‑1 (MQ=255)
                                                                                                                   aaaa‑aaaaaaaaaaaaATCAAATTATAAA‑T‑TA‑‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata               <  2:1732040/128‑1 (MQ=255)
                                                                                                                    aaT‑AAAAAAAAAACTATAACATTT‑‑AA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata             <  2:2360018/128‑1 (MQ=255)
                                                                                                                       aaaaaaaaaaaaaATAACC‑‑TTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata           <  2:946410/127‑1 (MQ=255)
                                                                                                                          aaaaaaaaaaATCCCC‑TTAAAA‑A‑TTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc         <  2:344983/128‑1 (MQ=255)
                                                                                                                            aaaaaaaaATACACTTTTAAA‑ATAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc         <  1:2536975/128‑1 (MQ=255)
                                                                                                                                aaCAATCCCC‑‑TTAAA‑A‑ATT‑AAAAAAAAAAAAAAAAAAAAAATAAAAACAAAAGATTTTTGTTAAAATAACATATTATACAAAATTTAATTTTTAAATAAATATATTAAAAAAATAATTATAAAatata  >  1:2724023/1‑128 (MQ=255)
                                                                                                                                  |                                                                                                                                  
AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCAT‑AAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CACAAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑A‑AAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATA  >  CP016816/202350‑202604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑