BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP016816	203,912	0	G	T	38.7%	810.5 / 197.2	677	intergenic (+296/+162)	JCVSYN2_00845/JCVSYN2_00850	lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand): ref base G (124/280); new base T (254/1); total (396/281)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 708 total aligned reads displayed.

AAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTG‑‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203786‑204039

     aaaaaattTTTTAATTTAAACACATTTTTAAAAAACCTTTTTTTTTTTGTTTTTTTTTA‑TAATATAAAAAATTAAAACGTTTTAAATGTTTTTTTTTTA‑GG‑‑‑TTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑GTaaaa                                                                                                                                <  1:348491/126‑1 (MQ=255)

      tttaatttttttATTTAAATACATTTTTAAAAAAGACTTTTTTATATGTTTTTTATTATTATTTAT‑AACAATAAAAAGCATTCAAAGTGTATTTTTTAGGG‑‑‑TTTT‑‑‑TTTTTTTTT‑TTTT‑TTT‑GTaaaaa                                                                                                                               <  2:2329672/122‑1 (MQ=255)

       aaaattTTTACATTTAACGCCATTTTTAAAAACCCCAAGGTTTTTGGTTTTTATTTA‑AATTTAAAAAAATACCACCGCTTTAAATGTG‑ATTTTTTAGGG‑‑‑TTTG‑‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATa                                                                                                                             <  1:2904732/128‑1 (MQ=255)

       aaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTG‑‑‑TTTTTTTTT‑TTTT‑TTT‑TTtaaaaat                                                                                                                             >  1:3297654/1‑126 (MQ=255)

        taaatTTTTAATTTTAATTAATTTTTAAAAAATTCTTTGTTTATTTTTTTTTAATA‑TAATTATAAAAATTAAAAATCTTTAAAATTTTATTTTTTA‑TG‑‑‑TTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATa                                                                                                                             <  1:1154098/127‑1 (MQ=255)

        aatatTTTTTAATTATATACATTTTTAAAAAATCCTTTTTTCTTGGTTTTTTATTA‑TAATTATTAACATTAAAAATCTTTAAAATTTTATTTTTTT‑GG‑‑‑GTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAATa                                                                                                                             <  2:1176963/125‑1 (MQ=255)

         aaatTTTTTATTTAAATCCATTTTTAAAAAAGACATTTTTTTATGTTTTTTATTA‑TAATTTTAAAAATTAAAAAGCTTTAAAATTTTTTTTTTTA‑GG‑‑‑CTTG‑‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATaaa                                                                                                                           <  2:120707/128‑1 (MQ=255)

         aaatTTTTAATTTAAATCCATTTGTAATAAATCCTATGTTTTATGATTTTTATTA‑TAATTATAAAAATTACAACGCTTTCAAAGTGTATTTTTTA‑TG‑‑‑CTTGTT‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATa                                                                                                                             <  2:3064732/128‑1 (MQ=255)

          tatTTTTCATTTAAACCAATTTGTAATAAAGACTATGTTCTTGGTTTTTTATTA‑TTCTTATCAAAATTAAAACTCTTTCAAATTTTATTTCTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATaaa                                                                                                                           <  2:1066677/127‑1 (MQ=255)

          aatTTTTATTTTAAATCCATTTTTAAAAACCCCTTTTTTCTAGGCTTTTTATTA‑TAATTATAAACAAAACAACGCTTTAAAATTTTATTTTTTA‑GG‑‑‑GTTGTT‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATaa                                                                                                                            <  1:3076642/128‑1 (MQ=255)

             ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATaaaata                                                                                                                        >  1:817250/1‑126 (MQ=255)

             ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATTAAAGt                                                                                                                        >  2:2621358/1‑128 (MQ=255)

             ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑ATTG‑‑‑TTTTTTTTTATTTA‑TAT‑TTTAAAAAAAAAGt                                                                                                                        >  2:1295726/1‑128 (MQ=255)

               ttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTA‑TACTTATCAACATTAAAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTG‑‑‑TTTTTTTTT‑TTTT‑TTTAataaaaataaaataaa                                                                                                                      >  1:954816/1‑124 (MQ=255)

                 cATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTG‑‑‑TTTTTTTTT‑TTTT‑TTT‑TTTTaaaaaaaaaataaat                                                                                                                   >  1:3031287/1‑121 (MQ=255)

                   tttAAATCCATTTTTAAAAAAGCCTATTTTCTTTGCTTTTTATTA‑TTAATATAAAAATTAAAACGCTTTAAAATTTTATTTTTTT‑GG‑‑‑GTTGTTTTTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAAGTAAGa                                                                                                                    <  1:2704142/128‑1 (MQ=255)

                      aaaGCCACTCGTACAAAAGCCAAAGTCCGAGGCTTTTTATTA‑TACTTTCCCACATTACAACGCTTGCTAAGTGTTTTTTTTT‑TG‑‑‑CTTT‑‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAAGTAAGAT‑TTGGa                                                                                                             <  1:2183158/128‑1 (MQ=255)

                        aGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GT‑‑‑CTTGTT‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAATAAAATTAAGTT‑TTGGa                                                                                                             >  2:776055/1‑128 (MQ=255)

                           cATTTGTAAAAAAGCCTATGTTATCGGGTTTTTATTA‑TACTTATCAACCTTACAACCGTTTCAAAGTGTATTTTTTT‑GG‑‑‑CTTG‑‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑Ac                                                                                                       <  1:227363/128‑1 (MQ=255)

                             ttttttaaaaaTCTTATTTTTTTGGATTTTTATTA‑TAATTATAAACATTAAAACGTATTAAAATTGTTTTTTTTA‑GGGTTTTTT‑‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAAGTAAGAT‑TTGGATCa‑a                                                                                                        <  1:233348/122‑1 (MQ=255)

                             ttttTAAAAAAGCCTATGTTCTAGTCTTTTTTTTA‑TAATTATCAACATTACAACTCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑Acc                                                                                                      <  2:2669510/128‑1 (MQ=255)

                               tttAAAAAATAATATTTTATAGTCTTTTATTTA‑TACTTATAAAAATTACAAATATTTAAAATTGTTTTTTTTA‑GG‑‑‑ATTG‑‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑aaa                                                                                                  <  2:1465656/126‑1 (MQ=255)

                                gTAAAAAAGCCTTTGTTATATGCTTTTTTTTT‑TAATTATCACATTTTCAACGCTTTTAATTGGGTTTTTTTT‑GG‑‑‑TTTG‑‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑aaaa                                                                                                 <  1:3259806/128‑1 (MQ=255)

                                gTAAAAAAGCCTATGTTCTAGGCTTTTTATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAATAAATGTTTTAT‑TTGGAtaacacaaa                                                                                                    >  2:1732483/1‑120 (MQ=255)

                                  aaaaaaGCCTATGTTCTAGGCTTTTTATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAATTATTAT‑TTGGATAA‑ACC‑aaaaa                                                                                                >  2:353499/1‑127 (MQ=255)

                                   aaaaaGCCTATTTTCTATGCTTTTTTTTA‑TACTTATAAAAATTAAAACTCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTG‑‑‑‑‑‑TTTTTT‑TTTT‑TTT‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAAACTatat                                                                                           <  2:664624/128‑1 (MQ=255)

                                          cTATGTTCTAGGCTTTTTATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGTT‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAATAAAAGTAATAT‑TTGTATCA‑ACC‑AAAACtatttaa                                                                                         >  2:3278406/1‑124 (MQ=255)

                                           ttttttttttgCTTTTTATTA‑TATTTTTCAAAATTACAACGTTTTCATAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATTAAAGTAAGAT‑TTGGATCA‑ACC‑AAAACTATATCaaa                                                                                       <  2:2979678/118‑1 (MQ=255)

                                           tATGTTCTAGGCTTTTTATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAAAAAAATATAAAT‑TTGGATGA‑CAC‑AAAACtataaaaaa                                                                                       >  1:1077080/1‑123 (MQ=255)

                                               ttttttgCTTTTTTTTA‑TTATTATCATCATTAAAACTTTTTAAAATTGTTTTTTTTT‑GGT‑‑TTTT‑‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAAACTATATCaaaaaaa                                                                                   <  1:846840/122‑1 (MQ=255)

                                               ttCTATGATTTTTATTA‑TAATTATCAAAATTACAACGTTTTCAAATTGTTTTTTTTT‑TG‑‑‑TTTT‑‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAAACTATATCAAAAAAAt                                                                                  <  1:2806993/128‑1 (MQ=255)

                                               ttCTAGGCTTTTTATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑TG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAAGAAAATT‑TTAGATAA‑ACCTAAAAATA‑ATaaaaaaaa                                                                                   >  2:888922/1‑128 (MQ=255)

                                                tCTAGGCTTTTTATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAATTAAATTTATTT‑TTTGATAA‑ACC‑AATACTAAATCAAAAAAAt                                                                                  >  2:319667/1‑128 (MQ=255)

                                                catAGGCTTTTTATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAAAAAATGTAAG‑T‑TTGGAAGACACC‑AAAAGAATTACaaaaaatt                                                                                  >  2:1673192/3‑126 (MQ=255)

                                                 cTAGGCTTTTTATTA‑TACTTATCAACATTTCAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAATAAAATTAATAT‑TTTTATAA‑ACA‑AAAAAT‑TATAaaaaaatatt                                                                                >  2:1619568/1‑124 (MQ=255)

                                                  tAGGCTTTTTATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTG‑‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAATTAAAAGTAATAT‑TTTGATCA‑ACA‑AAAACTATTTAATATAAAT‑Taa                                                                              >  1:1901664/1‑128 (MQ=255)

                                                  tAGGCTTTTTATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTG‑‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAAAAAAATTAAAAT‑TTGGATCA‑ACC‑AAAAATAATAAAAAAAAAT‑Taa                                                                              >  1:888364/1‑128 (MQ=255)

                                                   aGGCTTTTTATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GT‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAAAAAAATTAAGAT‑TTGGATCA‑ACA‑CAAACAATATAAAAAAAAT‑Taa                                                                              >  2:2113954/1‑128 (MQ=255)

                                                    ggCTTTTTATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGTT‑TTTTTTTTT‑TTTT‑TTT‑TTTAAAATAAAAGTAAAAT‑TTTGTAAA‑AAC‑AAAACTATAACAAAAAAAT‑Taa                                                                              >  1:1115398/1‑128 (MQ=255)

                                                      atttttATTA‑TAATTATCAAAATTACAACTCTTTAAAAGTGTTTTTTTTA‑TG‑‑‑CTTG‑‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAAACTATATCAAAAAAAT‑Taaaaaa                                                                          <  2:2755144/127‑1 (MQ=255)

                                                        ttttATTA‑TATTTTTAAAAATTTAAAAGCTTTAAATTTTTATTTTTTA‑TG‑‑‑TTTGTT‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAAACTATATCAAAAAAAT‑Taaaaaa                                                                          <  2:2578301/128‑1 (MQ=255)

                                                        ttttATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTG‑‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAATAAAATTAAAAT‑TTTGATAA‑ACC‑AAAAAAATATAAAAAAAAT‑Taaaaaaaa                                                                        >  2:2833140/1‑128 (MQ=255)

                                                         tttATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGTT‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAATAAAATTAATTT‑TTTGATCA‑AAC‑AAAAATATAAAAAAAAAAT‑Taaaaaaa                                                                         >  2:2018222/1‑128 (MQ=255)

                                                          ttatta‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGTT‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAAAAAAATTAAATT‑TTTGAACA‑A‑C‑AAAAAAATataaaaaaaaa‑taaaaaaaaa                                                                       >  2:2226286/1‑127 (MQ=255)

                                                               a‑taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑TTTAAAATAAAATTAAAAT‑TTGTATCA‑ACC‑AAAAATATATAAAAAAAAT‑TAAAAAAAAaaattt                                                                  >  1:2968002/1‑128 (MQ=255)

                                                               a‑taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAAAAAAATTAATAT‑TTTGATAA‑AAC‑AAAAATATATAAAAAAAAT‑TAAAAAAAAaatttt                                                                  >  2:3231467/1‑128 (MQ=255)

                                                                 taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAATAAAAGTTATAT‑TTTGTTCA‑ACC‑AAAACTATATAAAAAAAAT‑Taaaaaaaaatattta                                                                 >  2:1883169/1‑121 (MQ=255)

                                                                 taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAATAAAAGTAAGAT‑TTTGATAA‑ACC‑AAAAATATAAAAAAAAAAT‑Taaaaaaaaaaattat                                                                 >  1:2644165/1‑121 (MQ=255)

                                                                  aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAATTAAGAT‑TTTGATCA‑ACC‑AAAACATTTTCAAAAAAAA‑TATAAAAAAatgtttat                                                                >  2:1391058/1‑127 (MQ=255)

                                                                     tATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGTT‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAAAAAAAGTAAAAT‑TTGGATCA‑ACC‑AAAAAAATAAAAAAAAAAT‑TAAAAAAAAtaattatttt                                                              >  1:78615/1‑123 (MQ=255)

                                                                      aTCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTG‑‑‑TTTTTTTTT‑TTTTATTT‑TTAAAAATAAAATAAAAAT‑TTGAATAA‑ACA‑AAAAATATAAAAAAAAAAT‑TAAAAAAAAaattttatattt                                                            >  2:809765/1‑123 (MQ=255)

                                                                        cAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGTT‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAATAAAAATAAAAT‑TTTATAAA‑ACA‑AAAAAAATAAAAAAAAAATATaaaaaaaaaattatttttat                                                            >  1:1685098/1‑116 (MQ=255)

                                                                         aaCATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAAAATATATAAAAAAAAT‑TAAAAAAAATAGTTTTTTTGatgt                                                         >  1:2680993/1‑125 (MQ=255)

                                                                           aaTTAAAAAGCTTTCAAATTTTATTTTTTA‑TG‑‑‑TTTG‑‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCa                                                      <  2:2542928/127‑1 (MQ=255)

                                                                                  aCGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAATAAATATAATAT‑TTGGATAC‑ACC‑AAAAATTTATAAAAAAAAT‑TAAAAAAATTATTTTATTTGATTTGAAAATCta                                                >  2:2412955/1‑127 (MQ=255)

                                                                                  aCGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAAAAAAAGTAAGAT‑TTGGATAA‑ACC‑AAAACTTTATAAAAAAAAT‑TAAAAAAAATTTTTTAGTTTATTTTCAAAACtt                                                >  2:2727356/1‑127 (MQ=255)

                                                                                   cGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTG‑‑‑TTTTTTTTT‑TTTT‑TTT‑‑TAAAAATAAAAGTAATAT‑TTGGATAA‑AAC‑AAAAGAATAAAAAAAAAAT‑TAAAAAAAAAATTTTTTTTTAGtttaatagatgaat                                             >  1:2003473/1‑117 (MQ=255)

                                                                                    gCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAATAAAAATAATAT‑TTTTATAA‑ACA‑AAAACTTTATAAAAAAAAT‑TAAAAAAAATAGTTTTTTTTATTTTAAAAtattaa                                              >  1:1272396/1‑123 (MQ=255)

                                                                                    gCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAAGTAAGAT‑TTGGAACA‑ACC‑AAAAATATATCAAAAAAAT‑TAAAAAAAATAGTTTATTTAATTTTAAAAACTTCa                                              >  2:3002140/1‑128 (MQ=255)

                                                                                      tttCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAATTAATAT‑TTGGATCA‑ACC‑AAAAATTTATAAAAAAAAT‑TAAAAAAAAAATTTTATTTGATTTTCAAATATGCata                                            >  2:515180/1‑128 (MQ=255)

                                                                                      tttCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAAAAAAAGTAAGAT‑TTTTAAAA‑ACC‑AAAACTATAAAAAAAAAAT‑TAAAAAAAATAGTTTATTTGAATTAGAAATCTGCata                                            >  2:404389/1‑128 (MQ=255)

                                                                                       ttCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAATAAAATTAATTT‑TTGGATAA‑AAA‑AAAAATATATAAAAAAAAT‑TAAAAAAAATATTTTTTTTGATTTTAAAAtattctaat                                           >  2:2866760/1‑120 (MQ=255)

                                                                                       ttCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAAAAAAATTAATAT‑TTTGTTAA‑AAC‑AAAAATATATGAAAAAAAT‑TAAAAAAAAAATTTTATTTAATATTAAAATATGCaaat                                           >  2:1556589/1‑128 (MQ=255)

                                                                                       ttCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAAAAAAATTAATAT‑TTTGATCA‑ACC‑AAAAATATATAAAAAAAAT‑TAAAAAAAATATTTTTGTTGATTTTaaatactgaaaat                                           >  1:400766/1‑118 (MQ=255)

                                                                                        tCAAAGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAAAAAAAGTAAGAT‑TTTGATAA‑ACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATATTTTATTTGAGTTTAAAATcgtcaaaat                                          >  1:2553972/1‑120 (MQ=255)

                                                                                        tCAAAGTGTATTTTTTA‑GG‑‑‑CTTG‑‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAATAAAATTAATAT‑TTTTTTAA‑AAA‑AAAAATATTTAAAAAAAAT‑TAAAAAAAATATTTTTTTTTATTTTAAAAtattaaattat                                         >  2:1965571/1‑118 (MQ=255)

                                                                                          aaaGTGTATTTTTTA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAATAAAATTAAGAT‑TTGGATCA‑ACC‑AAAACTATATAAAAAAAAT‑TAAAAAAAATAGTTTATTTGAGTTTAAAATCTGCAtatata                                        >  1:2514904/1‑128 (MQ=255)

                                                                                                tATTTTTTA‑GG‑‑‑CTTG‑‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAATAAAAGTAATAT‑TTGGATCA‑ACC‑AAAAATATATAAAAAAAAA‑TAAAAAAAATAGTTTATTTGAGTTTCAAATATGCTAATAAAGTAaaaa                                 >  1:72771/1‑128 (MQ=255)

                                                                                                  ttttttt‑tG‑‑‑TTTT‑‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑AAA‑AAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAgg                               <  2:1134909/128‑1 (MQ=255)

                                                                                                  ttttttA‑GG‑‑‑CTTG‑‑‑TTTTTTTTT‑TTTT‑TTT‑TTTAAAAAAAAAATAAAATATTTGATGA‑ACC‑AAAAAAATTAAAAAAAAAT‑TAAAAAAAAAATTTTTTTTTAATTTAAAATAAAAATATTTAGTAaaaat                                >  2:3118227/1‑127 (MQ=255)

                                                                                                   tttttA‑GG‑‑‑CTTG‑‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAAAATATATCAAAAAAAT‑TAAAAAAAAAATTTTATTTTATTTTCAAATATGAAAATATAGTAAAAAgta                              >  2:1816790/1‑126 (MQ=255)

                                                                                                    ttttA‑GG‑‑‑CTTGTT‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAAACAAAAACAAAAAAAT‑TAAAAAAAAAATTTTTTTTTAGTTTCAAATATGCAATTATAGAACaaaaa                               >  1:2531694/1‑126 (MQ=255)

                                                                                                     tttA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAATAAAATTAAAAT‑TTTTATCA‑ACC‑AAAAATAAATAATAAAAAT‑TAAAAAAAAAATTTTATTTTAGTTACAAAACTCAATATAAATTAaaaatgta                             >  2:1032368/1‑124 (MQ=255)

                                                                                                      ttA‑GG‑‑‑CTTGT‑‑TTTTTTTTT‑TTTT‑TTT‑TTAAAAAAAAAATTAAAAT‑TTTGTTAA‑AAC‑AAAACTATATAAAAAAAAT‑TAAAAAAAATTTTTTTTTTTGGTTTAAAATCTGAATTAATATTAAAAATGata                            >  1:1636257/1‑126 (MQ=255)

                                                                                                       tA‑GG‑‑‑CTTG‑‑‑‑TTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAAAGTATATAAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTAAATACTGCATATATAGTACAAAGGAATTTa                         >  2:474302/1‑128 (MQ=255)

                                                                                                              tttgttttttttttttt‑tttt‑ttt‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  1:1724474/120‑1 (MQ=255)

                                                                                                              tgttttttttttttttt‑tttt‑ttt‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                          <  2:2480751/120‑1 (MQ=255)

                                                                                                               gtattttttttttttt‑tttt‑ttt‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAATCTATATCTAAAATAT‑TATAAATATTAGTTTAGTTGAGTTTCAATTCTGCATATATTGTTCAAAGGAATTTa                         <  1:3198642/121‑1 (MQ=255)

                                                                                                                ttttttttttttttt‑tttt‑ttt‑GTAATAATAATATTTAGAT‑TTTTATAT‑ATA‑TATTTTATATTATTTATAT‑TAATTAAAATAGTTTAGTTGATTTTAAAATCTGCATATATAGTACAAAGGAATTTAt                        <  1:2401386/122‑1 (MQ=255)

                                                                                                                    gtttttttttt‑tttt‑ttt‑ttAAAAAAAAAATTAAATT‑TTGGTGCA‑ACC‑AAAAATTTATAAAAAAAAT‑TAAAAAAAAAATTTTATTTATTTTTAAAAAATTCATATATTTTAAAAAGGAATTTATGATa                    >  1:1037575/3‑128 (MQ=255)

                                                                                                                      ttttttttt‑tttt‑ttt‑ttAAAAATAAAATTAATTT‑TTGGATAA‑ACC‑AAAACTTTTTAAAAAAAAT‑TAAAAAAAATATTTTTTTTTATTTTAAAATATGAAAATAAATTAAAAAAGAATATATtataca                  >  2:1699174/1‑126 (MQ=255)

                                                                                                                       tttttttt‑tttt‑ttt‑GTAAAAATAAAATTAATAT‑TTGGTTAA‑ACC‑AAAAATTTTTAAAAAAAAT‑TAAAAAAAATATTTTTTTTTTTTTTCAAAACTGCATATATATTACAAATGATTTTTTTATATaa                 >  2:2685622/1‑128 (MQ=255)

                                                                                                                       tttttttt‑tttt‑ttt‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑AAC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                 <  1:2607078/128‑1 (MQ=255)

                                                                                                                        ttttttt‑tttt‑ttt‑GTAAATATAAAAGTATGAT‑TTGGATAA‑AAA‑AAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                <  1:535608/128‑1 (MQ=255)

                                                                                                                        ttttttt‑tttt‑ttt‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                <  1:2844557/128‑1 (MQ=255)

                                                                                                                         tttttt‑tttt‑ttt‑GTAAATATAAATGTAAGTT‑TTTTTTCA‑AAC‑AAAAATATATAAAAAATAT‑TAAAAAAAATAGTTTAGTTTAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaa               <  2:2933976/128‑1 (MQ=255)

                                                                                                                          ttttt‑tttt‑ttt‑GTAAAAATTAATGTAAGAT‑TTGTATCA‑ACA‑AAAACTATATAAAAAAAAT‑TAAAAAAAATATTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGaaaat              <  1:301108/128‑2 (MQ=255)

                                                                                                                          ttttt‑tttt‑ttt‑GTAAAAATATAAGTATGAT‑TTGGATCA‑ACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa              <  2:2907547/128‑1 (MQ=255)

                                                                                                                          ttttt‑tttt‑ttt‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑AAC‑AAAACTATATAAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa              <  1:1538108/128‑1 (MQ=255)

                                                                                                                           tttt‑tttt‑ttt‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaa             <  1:2985493/128‑1 (MQ=255)

                                                                                                                                tttt‑ttt‑tTAAAAATAAAATTAAGAT‑TTGGATCA‑ACC‑AAAACAATATAAAAAAAAT‑TAAAAAAAATTTTTTTTTTTAGTTTAAAATCTTCAATTTTAGTACAAAGGAAATTATTATATAAAAAAATgt         >  2:2519650/1‑127 (MQ=255)

                                                                                                                                 ttt‑ttt‑GTATTAATAATTGTAATAT‑TTGGATAT‑ATC‑AAAACTATATCAATAAAAT‑TAAAATAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGa        <  2:2161046/128‑1 (MQ=255)

                                                                                                                                  tt‑ttt‑GTAAAAATAAAAGTAAGAT‑TTGGATAA‑ACC‑TAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt       <  1:1182864/128‑1 (MQ=255)

                                                                                                                                   t‑ttt‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAAACTATATAAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt      <  1:314864/128‑1 (MQ=255)

                                                                                                                                   t‑ttt‑GTAAAAAAAAAAGTAAGAT‑TTGGAACA‑ACC‑AAAACTATATAAAAAAAAT‑TAAAAAAAAAATTTTAGTTGAGTTTCAAATACGCATATATAGTACTAAGGAATTTATTTTAGAAAAAAATGGCtt      >  2:619508/1‑128 (MQ=255)

                                                                                                                                     ttt‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa     <  1:2744048/128‑1 (MQ=255)

                                                                                                                                      tt‑GTATATATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg    <  2:3323638/128‑1 (MQ=255)

                                                                                                                                      tt‑GTAAAAATAAAAGTATGTT‑TTGTATCA‑ACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat    <  1:2084013/128‑2 (MQ=255)

                                                                                                                                      tt‑GTAAAAATAAAAGTAATAT‑TTGTATAA‑AAA‑AAAAATATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat    <  1:1776151/128‑2 (MQ=255)

                                                                                                                                      tt‑GAAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg    <  1:2927450/128‑1 (MQ=255)

AAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTA‑TACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑‑CTTG‑‑‑TTTTTTTTT‑TTTT‑TTT‑GTAAAAATAAAAGTAAGAT‑TTGGATCA‑ACC‑AAAACTATATCAAAAAAAT‑TAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203786‑204039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`