Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9370CA32.2% 1255.4 / 102.8 804intergenic (+321/+137)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (241/288);  new base A (199/52);  total (449/355)
Fisher's exact test for biased strand distribution p-value = 1.07e-19
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 809 total aligned reads displayed.

GCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203811‑204064
                                                                                                                                    |                                                                                                                               
taatttttTAAAAAATTCTATTTTATATTATTTTTATTATATTTTTAAAAATTACAATTTTTTTAAATTGTTTTTTTTTTGTTTGT‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATc                                                                                                                                 <  1:2270327/124‑1 (MQ=255)
    ttttTAAAAAAGCCTATGTTCTAGTCTTTTTTTTATAATTATCAACATTACAACTCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAAcc                                                                                                                             <  2:2669510/128‑1 (MQ=255)
     ttGTAAAAAAGCCAATTTTATTTGCTTTTTATTATACTTATAAAAATTACAACTCTTTAAAATTGTATTTTTTTGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCa                                                                                                                            <  1:3268616/128‑1 (MQ=255)
        taaataatactttGTTCTAGGCTTTTTATTAAACTTATAAACATTACAACTCTTTCAAAGTTTTTTTTTTAGGGTTGT‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCaaaa                                                                                                                         <  1:998554/116‑1 (MQ=255)
         aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTTT‑TTTTTTTTTTT‑TTTTTTT‑AAAAAAAAAATTAAAATTTGGATAAACaaaa                                                                                                                          >  1:2875365/1‑128 (MQ=255)
         aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTT‑TTTTTGA‑AAATCTAATAGAATGATTTGGATCAACaaatcat                                                                                                                       >  1:2156642/1‑124 (MQ=255)
          aaaaaGACTATGTTCTATGTTTTTTATTATAATTATAAACATTAAAAAGCTTTAAAATTTTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCaaaagt                                                                                                                       <  2:3203057/128‑3 (MQ=255)
           aaaaTCCTATTTTCTTTGGTTTTTTTTATAATTATAAAAATTACAACTCTTTAAAAGTGTATTTTTTATGCTTT‑‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACtat                                                                                                                     <  2:342193/128‑1 (MQ=255)
            aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAATTAATATTTGGATAAACCaaaaaaat                                                                                                                     >  1:2684239/1‑124 (MQ=255)
               gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTTT‑AAAAAAAAAATTAATATTTGTATAAACCAAAAAtaaaaa                                                                                                                  >  1:811236/1‑124 (MQ=255)
               gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTTT‑AAAAAAAAAATTAAAATTTTTATAAACAAAAAatattaa                                                                                                                  >  2:2344189/1‑125 (MQ=255)
               gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTGT‑TAAAAAAAAAGTTATATTTGGTTCAACCaaaaattttag                                                                                                                  >  2:479832/1‑121 (MQ=255)
                 ctagaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTGTTTTTGTT‑TTTTTTT‑TAAAATAAAAGATATTTTTGGATAAGCCAAATTTATTTCaaa                                                                                                               >  2:570829/9‑128 (MQ=255)
                  tagaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTT‑TTTTTTT‑AAAAATAAAATTAATTTTTGGATCAACCAAAACTATATCaaaa                                                                                                              >  1:2389569/8‑128 (MQ=255)
                  tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTTATTTTTGT‑AAAAATAAAATTAAAATTTTGATAAACCAAAAAAATATaaaa                                                                                                               >  1:2933976/1‑128 (MQ=255)
                   ttttttttgtttttttATTATTATTATAAAATTTTAAACTCTTTTAATTTTTATTTTTTTTGTTGT‑‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaaaa                                                                                                             <  2:380743/117‑1 (MQ=255)
                    tGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAAGTAATATTTGGACAAACAAAAACTATTTaaaaaa                                                                                                             >  2:1563971/1‑128 (MQ=255)
                     gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAATTAATATTTTTATCAACCAAAGCTATAACaaaaaa                                                                                                            >  1:3009002/1‑128 (MQ=255)
                        cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAATTAAGATTTTGATCAACCAAAAATATATAAAAAAAAtt                                                                                                         >  2:2437093/1‑128 (MQ=255)
                        cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAATTAATATTTGGATCAACCAAAAATTTTTAAAAAAAATTa                                                                                                        >  2:31529/1‑128 (MQ=255)
                          aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTTT‑TAAATTTAAAGTAAGATTTGGGTAAACAAAATCTTTATAAAAAAATTTaa                                                                                                       >  1:3301027/1‑128 (MQ=255)
                          aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTTT‑AAAAATAAAAATAATATTTTATTAAAACAAAAATATAAAAAAAAAATTaa                                                                                                       >  2:2151829/1‑128 (MQ=255)
                            gCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTT‑TTTTTTT‑AAAAATAAAATTAATTTTTGTATCAACCAAAAATATATCAAAAAAATTaaaaa                                                                                                    >  2:3101696/1‑128 (MQ=255)
                             ttttttATTTTAATTATAAAAATTTATACTTTTTTAAATTGTTTTTTTTAGGGTTGTT‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaa                                                                                                     <  1:2974003/127‑1 (MQ=255)
                             atttttATTATAATTATCAAAATTACAACTCTTTAAAAGTGTTTTTTTTATGCTTG‑‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaaaa                                                                                                   <  2:2755144/127‑1 (MQ=255)
                               ttttATTATATTTTTAAAAATTTAAAAGCTTTAAATTTTTATTTTTTATGTTTGTT‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTaaaaaa                                                                                                   <  2:2578301/128‑1 (MQ=255)
                               ttttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTT‑TTTTTTT‑AAAAATAAAATTAAAATTTTGATAAACCAAAAAAATATAAAAAAAATTaaaaaaaa                                                                                                 >  2:2833140/1‑128 (MQ=255)
                                 ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑‑TTTTTTTTTTT‑TTTTTTT‑AAAAATAAAAGTTATTTTTGTATAAAAAAAAAATTTATAAAAAAAATTaaaaaaaa                                                                                                 >  1:3211133/1‑128 (MQ=255)
                                 ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑‑TTTTTTTTTTT‑TTTTTTT‑AAAAAAAAAATTAAATTTTTGAACAA‑CAAAAAAATataaaaaaaaataaaaaaaaa                                                                                                >  2:2226286/1‑127 (MQ=255)
                                   attatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTT‑TTTT‑‑T‑AAAAATAAAAGTAAGATTTGGATCAACACAAACTATATCAAAAAAATTAAAAAAAAtagttt                                                                                           >  2:3298688/1‑128 (MQ=255)
                                      ataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTTT‑AAAAAAAAAATTAATATTTTGATAAAACAAAAATATATAAAAAAAATTAAAAAAAAaatttt                                                                                           >  2:3231467/1‑128 (MQ=255)
                                       taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑‑TTTTTTTTTTT‑TTTTTTT‑TAAAATAAAATTAAATTTTGGATAAACAAAAAAAAAAAAAAAAAAATTTAAAAAAAaatttt                                                                                           >  1:1069005/1‑128 (MQ=255)
                                        aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAATTAAGATTTTGATCAACCAAAACATTTTCAAAAAAAATATAAAAAAatgtttat                                                                                         >  2:1391058/1‑127 (MQ=255)
                                          ttttaaaaaTTACCACGCTTTAAAAGTGTATTTTTTAGGTTTGT‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagtttagtt                                                                                       <  1:2571626/120‑1 (MQ=255)
                                          ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTTT‑AAAAAAAAAATTAAAATTTGGATAAACCAAAAATATATAAAAAAAATTaaaaaaaaatttttattt                                                                                       >  2:799298/1‑118 (MQ=255)
                                           tttaaaCATTACAAAGCTTTTAATTTGTATTTTTTTGGTTTGT‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTg                                                                                      <  1:3098566/124‑1 (MQ=255)
                                             tCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTTT‑AAAAATAAAAATAATATTTTGTTAAACCAAATCTATATAAAAAAATTTAAAAAAAAtaattatttttat                                                                                    >  2:209031/1‑120 (MQ=255)
                                                  aTTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTT‑TTTTTTTAAAAAATAAAAATAAGATTTGTTTAAAAAAAAAATTTTTATAAAAATTTAAAAAAAAATGTTTATTTgtttttaa                                                                               >  2:1669659/1‑121 (MQ=255)
                                                  aTTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTT‑TTTTT‑T‑AAAAATAAAATTAAATTTTGGATAAACCAAAAAAAAAAAAAAAAAATAAAAAAAAATATTTTATTTTAATTTCaaa                                                                             >  1:1712518/1‑128 (MQ=255)
                                                   ttACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTTT‑AAAAATAAAATTAAGATTTGGAAAAACCAAAAATAAATAAAAAAAATTAAAAAAAATATTTTAGTTGAGTTTaaa                                                                              >  1:1154623/1‑128 (MQ=255)
                                                    tACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTTT‑TTTTTTTTTTT‑TTTTTTT‑AAAAAAAAAAGTAATATTTGGATAAAACAAAAATATTTAAAAAAAATTAAAAAAAAtattttatttaatttaaa                                                                               >  2:2534736/1‑120 (MQ=255)
                                                        aCGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAAAAAAAGTAAGATTTGGATAAACCAAAACTTTATAAAAAAAATTAAAAAAAATTTTTTAGTTTATTTTCAAAACtt                                                                         >  2:2727356/1‑127 (MQ=255)
                                                         cGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTT‑TTTTT‑T‑AAAAATAAAAGTAATATTTGGATAAAACAAAAGAATAAAAAAAAAATTAAAAAAAAAATTTTTTTTTAGtttaatagatgaat                                                                      >  1:2003473/1‑117 (MQ=255)
                                                          gCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTTT‑AAAAATAAAAATAATATTTTTATAAACAAAAACTTTATAAAAAAAATTAAAAAAAATAGTTTTTTTTATTTTAAAAtattaa                                                                       >  1:1272396/1‑123 (MQ=255)
                                                            tttCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAATTAATATTTGGATCAACCAAAAATTTATAAAAAAAATTAAAAAAAAAATTTTATTTGATTTTCAAATATGCata                                                                     >  2:515180/1‑128 (MQ=255)
                                                             ttCAAAGTGTATTTTTTAGGCTTGTT‑‑TTTTTTTTTTT‑TTTTTTT‑AAAAATAAAATTAATATTTGGATCAACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTATTTTATTTTaaaaaattaaaa                                                                     >  2:2014711/1‑120 (MQ=255)
                                                             ttCAAAGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAAAAAAATTAAAATTTGGATAAACAAAAACAACAACAAAAAAATTAAAAAAAATAGTTTATTTTAGTTTAAAATCTGAatat                                                                    >  1:2508109/1‑128 (MQ=255)
                                                                 aattgtTTTTTTTAGGTTTGTTT‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCatatat                                                                  <  2:2504769/125‑1 (MQ=255)
                                                                  aGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTTT‑AAAAATAAAAGTAAGATTTTGTTCAACCAAAAATATATAAAAAAAATTAAAAAAAATATTTTATTTGAGTTTAAAATATGCAtaaatata                                                               >  2:2931374/1‑126 (MQ=255)
                                                                  aGTGTATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTTT‑AAAAATAAAAATAAGATTTGTATCAACCAAAAATAAAAAAAAAAAAATAAAAAAAAATTTTTATGTGAGTTTAAAATATACTtatatatt                                                               >  1:863924/1‑126 (MQ=255)
                                                                     gtATTTTTTAGGCTTGTTTTTTTTTTTTTTT‑TTTTTTT‑AAAAAAAAAAATAAAATTTTTATAAACCAAAAAAATTTGAAAAAAATTAAAAAAAAAAGTTTATTTATTTTTCTAAAATACAtatataat                                                               >  2:1054777/1‑126 (MQ=255)
                                                                     gtATTTTTTAGGCTTGTTT‑TTTTTTTTTTT‑TTTTTTT‑AAAAATAAAATTAATATTTGGATAAACCAAAAATATTAAAAAAAAATTAAAAAAAAAATTTTATTTTATTTTAAAATCAGCATATATATTa                                                              >  2:415283/1‑128 (MQ=255)
                                                                     gtATTTTTTAGGCTTGT‑‑‑TTTTTTTTTTT‑TTTTTTT‑AAAAAAAAAATTAAGATTTGTATAAACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTATTTTAATTTAAAATCTGCataaaaattaaa                                                            >  2:2693973/1‑119 (MQ=255)
                                                                      tATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTT‑TTTTTTT‑AAAAATAAAAGTAATATTTGGATCAACCAAAAATATATAAAAAAAAATAAAAAAAATAGTTTATTTGAGTTTCAAATATGCTAATAAAGTAaaaa                                                          >  1:72771/1‑128 (MQ=255)
                                                                       aTTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTT‑TTTTTTT‑AAAAATAAAATTAAGATTTTGATCAACCAAAAATTTATCAAAAAAATTAAAAAAAATATTTTATTTTATTTTCAAATATGCATATATAATAaaaaa                                                         >  2:91907/1‑127 (MQ=255)
                                                                          ttttAGGCTTGTTT‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAAGTAATTATTGGATCAACCAAAAATATATCAAAAAAATTAAAAAAAAATATTTATTTGAATTTCAAAAATGCAaatataattaaaag                                                         >  2:3036818/1‑120 (MQ=255)
                                                                          ttttAGGCTTGTT‑‑TTTTTTTTTTT‑TTTTTTT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACAAAAACAAAAAAATTAAAAAAAAAATTTTTTTTTAGTTTCAAATATGCAATTATAGAACaaaaa                                                        >  1:2531694/1‑126 (MQ=255)
                                                                               ttttgtttttttttttttttt‑tttttGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAATATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAt                                                     <  1:206389/118‑1 (MQ=255)
                                                                                 ttttttttttttttttttt‑tttttGT‑AAATATAATAGTAAGATTTGGATAAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                   <  1:1426159/120‑1 (MQ=255)
                                                                                 ttttttttttttttttttt‑tttttGT‑AAAAATAAAAGTAAGATTTTGATAAAACAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                   <  1:492477/120‑1 (MQ=255)
                                                                                   ttttttttttttttttt‑ttttttt‑AAAATTTAAAGTAAGATTTGTATCAACCAAAACTATATCTAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                 <  2:854466/122‑1 (MQ=255)
                                                                                     ttgtttttttttttt‑tttttGT‑AAAAATAAAATTAAATTTTTGATAAAAAAAAAAAAAATAAAAAAAATTAAAAAAAATTTTTTATTTTTTTTTCAAATGATAATATATATTAAAAAAAAAttatata                                               >  2:722088/5‑123 (MQ=255)
                                                                                       gtttttttttttt‑ttttttt‑AAAAAAAAAATTAAATTTTGGTGCAACCAAAAATTTATAAAAAAAATTAAAAAAAAAATTTTATTTATTTTTAAAAAATTCATATATTTTAAAAAGGAATTTATGATa                                             >  1:1037575/3‑128 (MQ=255)
                                                                                       gtttttttttttt‑tttttGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAAATATATAAAAAAAATTAAAAAAAATAGTTTATTTGAGTTTAAAATATTATAATATATTAAAAAGGATTTTATGaaa                                             >  2:1780128/3‑126 (MQ=255)
                                                                                         ttttttttttt‑ttttttt‑AAAAATAAAATTAATTTTTGGATAAACCAAAACTTTTTAAAAAAAATTAAAAAAAATATTTTTTTTTATTTTAAAATATGAAAATAAATTAAAAAAGAATATATtataca                                           >  2:1699174/1‑126 (MQ=255)
                                                                                          tttttttttt‑tttttGT‑AAAAATAAAAGTAAGATTTGGATCAAAAAAAAATATATTAAAAAAATTTAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                                          <  1:1115287/128‑1 (MQ=255)
                                                                                             ttttttt‑tttttGT‑TTAAATTTAAGTAAGATTTGGATCAACCAAAACTATATCAAAATAATTAAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGTTAGataaa                                       <  1:2772298/128‑1 (MQ=255)
                                                                                             ttttttt‑tttttGT‑AATAATAAAAGTAAGATTTGGATCAAACAAAAATATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                                       <  1:918066/128‑1 (MQ=255)
                                                                                              tttttt‑tttttGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaa                                      <  1:2634151/128‑1 (MQ=255)
                                                                                               ttttt‑tttttGT‑AAAAAAAAAAGTAAGATTTGGAAAAACCAAAAATATATAAAAAAAATTAAAAAAAATATTTTAGTTTAGTTTAAAAACTGAATATATATTAAAAAAGAATTTATTATATaaaaaaa                                     >  2:652780/1‑128 (MQ=255)
                                                                                                 ttt‑tttttGT‑TAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATg                                   <  1:350615/128‑1 (MQ=255)
                                                                                                  tt‑tttttGT‑AAAAATAAAAGTAAGATTTGGAAAAACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTATTTGAGTTTAAAATATGCATATATATTAAAAAGGAATTTATTATATAAAAAAATgg                                  >  2:1864458/1‑128 (MQ=255)
                                                                                                   t‑ttttttt‑AAAAATAAAATTAAGATTTGGATCAAACAAAAAAATATAAAAAAAATTAAAAAAAATAGTTTATTTTTGTTTAAAATATGCATATATTATTAAAAGGAATTTATTAAATAAAAAAATgta                                 >  1:3026449/1‑126 (MQ=255)
                                                                                                      ttttGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                               <  1:314864/128‑1 (MQ=255)
                                                                                                       tttGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa                              <  1:784388/128‑1 (MQ=255)
                                                                                                        tttt‑aataataaATGTAAGATTTGGATCTAACATAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                             <  2:1730603/125‑2 (MQ=255)
                                                                                                        tttt‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                             <  1:1195565/125‑2 (MQ=255)
                                                                                                        ttGT‑AAATATAAAAGTAAGATTTGGATCAACTAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                             <  1:1906269/128‑2 (MQ=255)
                                                                                                        ttGT‑AAAAATAAAAGTAAGATTTTGATCAACCAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                             <  2:2614503/128‑2 (MQ=255)
                                                                                                        ttGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                             <  2:2875545/128‑2 (MQ=255)
                                                                                                         ttt‑aataataaAATTAATATTTTTATAAAAAAAAAATATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGt                            <  2:1306814/126‑1 (MQ=255)
                                                                                                          gT‑AAAAATAAAAGTAAGATTTGGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatca                           <  1:2664572/128‑4 (MQ=255)
                                                                                                            ttaaaaTTAATGTAAGATTTGGATCAAACAAAACTATATCTAAAAAATTAATAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaa                          <  1:1836633/126‑5 (MQ=255)
                                                                                                             aataataatAGTAAGATTTGGATATATAAAAACTATATATAAAAAATTAAAAAAAATAGTTTAGTTTAGTTTAAAATGTGCATATTTATTACAAAGTAATTTATGATAGAAAAAAATGGATTAGTTGa                         <  2:1115398/125‑1 (MQ=255)
                                                                                                              ataaTAAAAGTAAGATTTGGATCAACCAAAACTATATAAAAAATATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaact                        <  1:645259/126‑7 (MQ=255)
                                                                                                              aatatatAAGTTAGATTTGGATCAAACAAATCTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCAGCATATATAGGACAAAGGAATTTATGATAGAAAAAAATGGATTatcaact                        <  1:1755005/125‑7 (MQ=255)
                                                                                                              aaaaTAAAAGTATGATTTTTATAAACCAATACTATATCAAAAAAATTAAAAAAAATATTTTAGTTGAGTTTCAAATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                        <  2:1489093/128‑1 (MQ=255)
                                                                                                                  ttatattAAGATTTTTATAAAATAAATATATATTAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  2:1937002/122‑1 (MQ=255)
                                                                                                                  tAAATGTATGATTTGGATCAAACAAAACTATATAAAAAAAATTAAAAAAAATAGTTTATTTGAGTTTCAAATCTGCATATATAGTTCAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                    <  1:2303292/128‑1 (MQ=255)
                                                                                                                   aaaaGTAAGATTTGTATCATCTAAAAGTATATAAAAAAAATTAATAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                   <  2:1212485/128‑1 (MQ=255)
                                                                                                                        tAAGATTTGGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttt              <  2:1154623/128‑1 (MQ=255)
                                                                                                                        tAAGATTTGGATCAAAAATAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTATCAACTAATCCAtttt              <  1:2735716/128‑1 (MQ=255)
                                                                                                                         aataTTTGGATCAATCAAATTTATATCAAAAAAATT‑AAAAAAATATTTTAGTTGAGTTTCAAATCTTCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTATCAACTAATCCAtttttt            <  1:1518682/125‑1 (MQ=37)
                                                                                                                         aaGATTTGGATCAACCAAAACTATATTAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt             <  2:3008819/128‑1 (MQ=255)
                                                                                                                          aGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTAGAGTTTCAAATCTTCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGATGATAAACCAtttttt            >  1:1665410/1‑128 (MQ=255)
                                                                                                                           gATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTTAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa           >  1:1587602/1‑128 (MQ=255)
                                                                                                                           gATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATATTCCATTTTTTa           >  2:1634004/1‑128 (MQ=255)
                                                                                                                            aTTTTGATCAACCAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTaa          <  1:2820151/128‑1 (MQ=255)
                                                                                                                             tttGGATGAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTTGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt         <  2:3246009/128‑1 (MQ=255)
                                                                                                                              ttGGATCAAAAAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtt        <  2:2977306/128‑1 (MQ=255)
                                                                                                                                    |                                                                                                                               
GCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑‑TTTTTTTTTTT‑TTTTTGT‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTT  >  CP016816/203811‑204064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑