Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816420,2530CA41.8% 1017.1 / inf 1111intergenic (‑536/+307)JCVSYN2_01895/JCVSYN2_0190030S ribosomal protein S10/tRNA‑Thr
Reads supporting (aligned to +/- strand):  ref base C (188/434);  new base A (382/64);  total (576/535)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1130 total aligned reads displayed.

GAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAA‑GTTTTAAAACTTACTTTTTTGTTTTTA  >  CP016816/420127‑420380
                                                                                                                                    |                                                                                                                                
 aaaaCTACTATCAATTTTTTAAAAAAATTTTAATTTTAATAACTGAATTATTTTTCAAATTTTTAAATTATTTTCAAAACATTATCTATTAATAAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑ACaa                                                                                                                                <  2:3201900/128‑1 (MQ=255)
  aaaCTACTAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑‑TTTTTTTTTTTTTTTT‑‑‑ACaaaa                                                                                                                              >  2:1842003/1‑128 (MQ=255)
  aaaCTACTAGCACTTTTTTAAAAAATTATTAATTTTAATAAATTAATTATTTTTCAAATTGTTAAATTATTTTCAAATAATTATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑ACaaa                                                                                                                               <  2:249051/128‑1 (MQ=255)
    actactAGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑Aaaaaaa                                                                                                                             >  1:3106208/1‑128 (MQ=255)
     ctactaGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATTCTCTA‑‑TTTTTTTTTTTTTTTTT‑‑‑Aaaaaaa                                                                                                                             >  1:2175271/1‑128 (MQ=255)
     ataatataaattttttAAAAAATTTTTTATTTTAATAAATTAATTATTTTTAAAAATTTTAAATTATTTTAAAATAAATATATATTAATAAATTTTATTCGC‑T‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAat                                                                                                                            <  2:2308590/118‑1 (MQ=255)
       aatatcaattttttAAAAAATTTTTAATTTTTATAAATTAATTATTTTTTAAATTTTTAAAATATTTTAAAATAATTATATATTAATAAATTTTTTTTTA‑GT‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAata                                                                                                                           <  1:1665343/120‑1 (MQ=255)
         tttttattttttTAAAAATTTTTATTTTTTATAAATTTATTTTTTTTAAAATTTTTTAATTATTTTAAAATTATTTTATATTAATAAATTTTTTTTTC‑T‑‑TTTTTTTTTTTTTTTTT‑‑‑AAAAAAATATaa                                                                                                                        <  1:465391/122‑1 (MQ=255)
         aaGCATTTTTTTAATATATTTTTAATTTTAATAACTGAATTATTTTTGAAATTGTTAATTTATTTTCAAATCATTATATATTAATCAATTTTTTGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATaa                                                                                                                        <  2:2583544/127‑1 (MQ=255)
          attaattttttAAAAAATTTTTAATTTTAATAAATTAATTATTTTTATAATTTTTAAATTATTTTTAAATTATTATATATTTATAAATTTTATTTTT‑T‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAat                                                                                                                       <  1:1307280/123‑1 (MQ=255)
          aGCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑‑TTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAatt                                                                                                                      >  1:1105894/1‑128 (MQ=255)
           gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑AAAAAAATATAatt                                                                                                                      >  2:3021458/1‑128 (MQ=255)
           gCACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑‑TTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAattt                                                                                                                     >  2:420528/1‑128 (MQ=255)
            catatttttAAAAAATTTTTAATTTTAATAACTGATTTTTTTTTCAAATTTTTAAATTATTTTAAAATCATAATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAattt                                                                                                                     <  2:195342/124‑1 (MQ=255)
            cACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTTTA‑AAAAAAATATAat                                                                                                                       >  2:2393486/1‑128 (MQ=255)
            cACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTA‑‑‑AAAAAAATTAAattt                                                                                                                     >  1:1405735/1‑128 (MQ=255)
            cACTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGATC‑G‑‑TTTTTTTTTATTTTTTT‑‑‑A‑AAAAAAATAaatta                                                                                                                    >  2:608478/1‑128 (MQ=255)
             tattttttATAAAATTTATAATTTTAATAAATTAATTTTTTTTTAAATTTTTAAATTTTTTTTTAATAAATATATATTTATAAATTTTTTTATA‑GT‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAattt                                                                                                                     <  2:2012864/126‑1 (MQ=255)
             aattttttAAAAAATTTTTAATTTTAATAAATTAATTATTTTTAAATTTTTTAAATTTTTTTAAAATAATTATATATTAATAAATTTTATTATC‑T‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAattta                                                                                                                    <  2:483180/126‑1 (MQ=255)
             aCTTTTTTAAAAAATTTTTAATTTTAATAACTTAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATTATA‑T‑‑TTTTTTTTTTTTTTTAA‑‑‑AAAAAAATATAattta                                                                                                                    >  2:1577245/1‑128 (MQ=255)
             aCTTTTTTAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑‑‑TTTTTTTTTTTTTTT‑‑‑AC‑AAAATATAatttattt                                                                                                                 >  1:3169768/1‑128 (MQ=255)
               ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑T‑‑TTTTTTTTTTTTTTTTA‑‑‑AAAAAAAAAAAatatatt                                                                                                                  >  2:1288629/1‑128 (MQ=255)
               ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑AAAAAAATTAAatttatt                                                                                                                  >  2:180542/1‑128 (MQ=255)
               ttttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑AAAAAAATAAAatttatt                                                                                                                  >  2:2177478/1‑128 (MQ=255)
                 ttttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑‑TTTTTTTTTTTTTATT‑‑‑ACAAAAAAATAattaatttta                                                                                                               >  2:1749354/1‑126 (MQ=255)
                  tttAAAAAATTTTTATTTTTAATAAATTAATTATTTTT‑AAATTGTTATATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑‑TTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGAtt                                                                                                             <  2:1171378/128‑1 (MQ=255)
                  tttAAAAAAATTTTAATTTTTATAACTTAAATAATTTTTAAATTTTTAAATTATTTTAAAATCAATATCAATTAATAAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGa                                                                                                               <  2:3090053/128‑1 (MQ=255)
                   ttAAAAAATTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑‑TTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATttattttatt                                                                                                             >  1:2817562/1‑128 (MQ=255)
                   ttAAAAAATTTTTAATTTTAATAAATGAATTATTTTTAAAATTTTTTAATTATTTTAAAATCATTATATATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGAt                                                                                                              <  1:783102/128‑1 (MQ=255)
                    tAAAAAATTTTAAATTTTAATAAATTAATTATTTTTCAAATTTTTAAATTATTTTAAAATCATTATATATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGAtt                                                                                                             <  2:389979/128‑1 (MQ=255)
                      aaaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTTATTaa                                                                                                           >  2:2726545/1‑128 (MQ=255)
                       aaaaTTTTTAATTTTAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATATTATGCTC‑G‑‑TTTTTTTTTTTTTTTTA‑‑‑AAAAAAATTTAATATATTTTATTaaa                                                                                                          >  1:1244880/1‑128 (MQ=255)
                             tttaattttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTTATTAAAAGtata                                                                                                    >  2:870116/10‑128 (MQ=255)
                               ttattttaataatTTAATTATTTTTAAAATTTTTAAATTATTTTTAAATAATTATTTTTTAATAAATTTTATTATA‑T‑‑TTTTTTTTTTTTTTTTT‑‑‑AAAAAAATATAATTTATTTGATTAAACGTATAtt                                                                                                  <  2:1086906/121‑1 (MQ=255)
                                  ttttaataaaataaTTATTTTTTAAATTTTTAAATTATTTTAAAATAATTATCTATTAATCAATTTTATTCTC‑GT‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTa                                                                                                <  1:946228/116‑1 (MQ=255)
                                    ttaatAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑T‑‑TTTTTTTTTTTTTTTTT‑‑‑AAAAAAATATAATTTATTTAATAAAAAGTATATTTAttt                                                                                             >  2:820313/3‑126 (MQ=255)
                                    taattaaattaaTTTTTTTTTAAATTTTTAAATTATTTAAAAATAATAATAAATTAACAAATTTTATCCCC‑G‑‑‑TTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGtt                                                                                            <  2:2819294/118‑1 (MQ=255)
                                     ttatAAATTAATTATTTATCAATTTTTTTAATTATTTTAAAATAATTATATATTAATAAATTTTATTCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGtt                                                                                            <  2:2933879/126‑1 (MQ=255)
                                      tataaatttattaatATTTAAATTTTTAAATTATTTTTTAAAAATTTATTATTAATAAATTTTATTTTT‑G‑‑‑TTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTta                                                                                          <  1:3237181/119‑1 (MQ=255)
                                        taaattatttattTTTTAAATTTTTAAATTTTTTTTAAATAATTATTTTTTAATAAATTTT‑TTTTT‑T‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTtaat                                                                                        <  1:1178697/120‑1 (MQ=255)
                                        tAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑‑TTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTTATTAAACGTATATTTATTTTtaat                                                                                        >  1:1876795/1‑128 (MQ=255)
                                           cTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑AAAAAAATATAATTTAATTTATTAAAAGTATTTTTTTTTTtaataa                                                                                      >  2:698432/1‑128 (MQ=255)
                                            tttatttttTTTTAAATTTTTTAATTATTTTTAAAATATTTTTTTTTTATTAAATTTTTTTTT‑T‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATaaa                                                                                     <  1:820195/125‑1 (MQ=255)
                                             gAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑‑TTTTTTTTTTTTTTTT‑‑‑ACAAAAAAATAATTTATTTTATTAAACTTATATTTATGTTTAATaaaaa                                                                                   >  2:2977479/1‑128 (MQ=255)
                                                ttattTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑‑TTTTTTTTTTTTTTTT‑‑‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATgg                                                                                >  2:2685348/1‑128 (MQ=255)
                                                 ttttttttaattttttaaATTTTTTTAAAATAATTATATTTTAATAAATTTTTTTTTT‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATgg                                                                                <  2:3057644/126‑1 (MQ=255)
                                                   tttttCAATTTTTAAAAATATTTTCAAAAATTTATCTATTAAAAATTTTTATTCTA‑G‑‑‑‑‑TTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAaaag                                                                           <  1:3315276/128‑1 (MQ=255)
                                                   tttttCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑GT‑TTTTTTTTTTTTTTTTT‑‑‑AAAAAAAAATAATTAATTTTATTAAAATTATATTTATTTTTAATAAAAAttaa                                                                               >  2:554552/1‑125 (MQ=255)
                                                     ttttAAATTTTTAATTTTTTTTTAAATTATTTTTTATTAATTAATTTTTTTTTT‑T‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGaaaa                                                                            <  1:72511/128‑1 (MQ=255)
                                                          aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑GT‑TTTTTTTTTTTTTTTTT‑‑‑AAAAAAATATAATTTATTTTATTAAAATTATATTTATTTTTAATAAAAATTAAaaataaa                                                                        >  2:738505/1‑128 (MQ=255)
                                                          aaTTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑AAAAAAATATAATTTATTTTATTAAAATTATATTTTTTTTTAATAAAAATTTAaaataaat                                                                       >  2:91792/1‑127 (MQ=255)
                                                            ttGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑AAAAAAAATAAAATTATTTTATTAAAAATTTATTTATTTTTAATAAAAATTTaaaaaaaaatt                                                                     >  2:3248460/1‑125 (MQ=255)
                                                              tttATATTTTTTTTAATTAATTATTTATTTATTAATTTTATTTTA‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGaa                                                                   <  2:2617913/127‑1 (MQ=255)
                                                              tttAAATTTTTTTAAAAATATTATATAATAATAAATTTTTTTTTA‑G‑‑‑TTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAAt                                                                  <  1:1765130/127‑1 (MQ=255)
                                                                 aaaTTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑AAAAAAAAATAATTTAATTAATTAAAATTATATTTATTtttaaaaaaaatttaaaaaaaatttaaatt                                                                >  1:2373293/1‑120 (MQ=255)
                                                                  aaTTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTTA‑‑ACAAAAATATAATTTATTTTATTAAACGTATTTTTATTTTTAATAAAAATGTAAAAAAAAGTTAAttt                                                                >  1:2731349/1‑127 (MQ=255)
                                                                    ttattTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTTTTTAAAGGTATATTTTTTTTTAATAAAAATGTAAAAAAAATTTAAttttat                                                             >  2:1003291/1‑124 (MQ=255)
                                                                      attTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTTATTAAACTTATATTTATTTTATATAAAAATGGAAAAGAAAGTTAATTGTAata                                                           >  1:3068370/1‑128 (MQ=255)
                                                                      attTTAAAATCTTTTTTTTTTAATAAATTTTTTTCTT‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCata                                                           <  1:2962399/128‑1 (MQ=255)
                                                                       ttttCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑AAAAAAATATAATTTATTTTATTAAACTTTTATTTATTTTTAATAAAAATGGAAAAAAAATTTAATTTtaataa                                                          >  2:1116373/1‑128 (MQ=255)
                                                                        tttCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑AAAAAAATATAATTTTTTTTATTAAACGTATATTTTTTTTTAAAAAAAATTGAAAAGAAATTTATTTGAaataat                                                         >  1:856703/1‑128 (MQ=255)
                                                                            aaaTTATTATATTTTAATAAATTTTTTTTTT‑TT‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATaataat                                                      <  1:3011657/128‑1 (MQ=255)
                                                                                     tCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑AAAAAAATAAAATTAATTTTATTAAACGTATATTTATTTTTAATAAAAATGTAAAAGAAAGTGAATTTTAATAAAAATtaaattaaat                                            >  2:3305576/1‑128 (MQ=255)
                                                                                      cTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑AAAAAAATATAATTTAATTTTTTAAAGTTATATTTATTTTAATTAAAAAAGTAATATAAATATAAATGTCATAATAATTATATTAAatt                                           >  2:1222444/1‑127 (MQ=255)
                                                                                       tATTAATCAATTTTATGCTC‑GTTTTTTTTTTTTTTTTTTT‑‑‑AAAAAAATATAATTTATTTTATTAAACGTATTTTTTTTTTTAATAAAAATGTAAAAGAAATTGATTTTTCATATTATTTTAATTAAat                                            >  2:1365851/1‑128 (MQ=255)
                                                                                            ataaaTTTTATTCTC‑T‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAAc                                     <  1:1018351/125‑1 (MQ=255)
                                                                                            aTCAATTTTATGCTC‑GTTTTTTTTTTTTTTTTTTT‑‑‑AAAAAAATAAAATTTTTTTTATAAAAGTTTTTTTTATTTTTAAAAAAAATGAAAAAAAAAATAAATTTTAAAAATAATTTAATTAAaaataaa                                       >  1:2281309/1‑126 (MQ=255)
                                                                                              cAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTTTTAAAAAAAATAAATTTTTTTTTTTTAAACTTATATTTTTTTTTAA‑AAAAATTTAAAAAAAAATTAAATTTAAAAAAAAATTTATTAAAATTATaaa                                     >  2:342740/1‑127 (MQ=255)
                                                                                                aTTTTATGCTC‑GTTTTTTTTTTTTTTTTTTT‑‑‑AAAAAAATATAATTTTTTTTATTAAACTTATATTTATTTTTAATAAAAATGGAAAATAAAGTTAATTGTAATAATAATTTAATTAAATATAaaaaaa                                   >  1:895869/1‑128 (MQ=255)
                                                                                                aTTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATTAAATTTATTTTTTTAAAATTATATTTTTTTTTAATAAAAATTTAAAAAAAATTTATTTTAAATAATAATTTATTTAATTTTATAACAAtt                                 >  2:2122610/1‑127 (MQ=255)
                                                                                                  tttttttttgg‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTTATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGt                                <  1:673942/118‑1 (MQ=255)
                                                                                                      tttattattgtttttttttttttttt‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTaa                              <  2:3161169/118‑1 (MQ=255)
                                                                                                      atgctcgttttttttttttttttttt‑‑‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGTAAAATAAATTAAATTGTAATAATAATTTAATTAAATATAAAAAAATGTaa                              >  2:1425749/10‑128 (MQ=255)
                                                                                                         tttattttttttttttttttttt‑‑‑AAAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAA‑Gtt                          <  2:2766335/122‑1 (MQ=255)
                                                                                                          tttttttttttttttttttttt‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAA‑Gttt                         <  1:262346/123‑1 (MQ=255)
                                                                                                          c‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑AAAAAAATATAATTTATTTTATTAAACGTATTTTTATTTTTAATAAAAATGTAAAAAAAAGTTATTTTTAATAATAATTTAATTAAAATTATAAAAATTTAA‑TTTTTaa                      >  1:2854419/1‑128 (MQ=255)
                                                                                                           ttttttttttttttttttttt‑‑‑AAAAAAATATAATTTATTTGATTATACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAA‑Gtttt                        <  2:776182/124‑1 (MQ=255)
                                                                                                            tttttttttttttttttttt‑‑‑ATAATAATATAATTTATTTGATTAATAGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTAATAATAATTTAATTAAATATATAACAATGTAA‑GTTTTa                       <  1:57871/125‑1 (MQ=255)
                                                                                                            tttttttttttttttttttt‑‑‑ATAATAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATTGAAAAGAAATTGAATTGTAATAATAATTTAATTAAATATATAACAATGTAA‑GTTTTa                       <  2:2258499/125‑1 (MQ=255)
                                                                                                            tttttttttttttttttttt‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAA‑GTTTTa                       <  2:2540649/125‑1 (MQ=255)
                                                                                                            gtttgttttttttttttttt‑‑‑ACTAAAATATTATTTATTTGATTAAACGTATTTTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAA‑GTTTTa                       <  1:2096121/123‑1 (MQ=255)
                                                                                                            g‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATTTTTAATAAAAATGTAAAAGAAAGTTAATTGTAATAATAATTTAATTAAATATATAACAATTTAA‑GTTTTaaa                     >  2:2865198/1‑128 (MQ=255)
                                                                                                            g‑‑TTTTTTTTTTTTTTTTT‑‑‑AAAAAAATATAATTTATTTGATTAAACGTATTTTTTTGTTTAATAAAAATGTAAAAAAAATTGAATTTTAATAATAATTTAATTAAATATATAAAAATTAAA‑TTTTTaaa                     >  2:1050257/1‑128 (MQ=255)
                                                                                                            g‑‑TTTTTTTTTTTTTTTTT‑‑‑AAAAAAATATAATTTATTTGATTAAACGAATATTTATTTTTAATAAAAATGGAAAAAAAATTTAATTGTAATAATAATTTAATTAAATATATAAAAATTTAA‑‑TTTTaaaa                    >  1:2689183/1‑128 (MQ=255)
                                                                                                            cgtttttttttttttttttt‑‑‑AAAAAAATATAATTTTTTTTTTTAAACTTTTATTTTTTTTTAAAAAAAATGTAAAAAAAAAGTTATTTAAATAATAAATAATATAAATATAAAAAAAATTAA‑TTTTTa                       >  2:151050/4‑128 (MQ=255)
                                                                                                               ttttttttttttttttt‑‑‑tCATATATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAA‑GTTTTaaaa                    <  1:204598/128‑1 (MQ=255)
                                                                                                               ttttttttttttttttt‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAA‑GTTTTaaaa                    <  1:252485/128‑1 (MQ=255)
                                                                                                               ttttttttttttttttt‑‑‑AAAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAA‑GTTTTaaaa                    <  1:1611698/128‑1 (MQ=255)
                                                                                                                tttttttttttttttt‑‑‑AAAAAAATATAATTTATTTTATTAAACTTAAATTTATTTTTAATAAAAATGTAAAATAAATTTAATTGTAATATTAATTTAATTAAAAATAAAAAAAT‑TAA‑ATTTTaaaaac                  >  1:350537/1‑126 (MQ=255)
                                                                                                                tttttttttttttttt‑‑‑AAAAAAATATAATTTATTTTATTAAACGTATATTTTTTTTTAATAAAAATGTAAAATAAATTTAATTTTAATAATAATTTAATTAAATATATAACAATTTAA‑GTTTTaaaaa                   >  2:645580/1‑127 (MQ=255)
                                                                                                                 ttttttttttttttt‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAA‑GTTTTAAAact                  <  1:318810/128‑1 (MQ=255)
                                                                                                                  tttttttttttttt‑‑‑ACAAAAATTTAATTTTTTTGATTAAACGTATATTTATTTTTAAAAAAAATGAAAAACAAAGTTAATTTTAATAATAATTAAATTAAATATATAACAATTAAA‑TTTTTAAAaatt                 >  1:2586997/1‑128 (MQ=255)
                                                                                                                  tttttttttttttt‑‑‑AAAAAAATATAATTTATTTTATTAATAGTATATTTATGTTTAATAAAAATTGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAA‑GTTTTAAAactt                 <  2:1895443/128‑1 (MQ=255)
                                                                                                                      tttttttttt‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAA‑GTTTTAAAacttacat             <  1:2904972/128‑3 (MQ=255)
                                                                                                                       ttttttttt‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAA‑GTTTTAAAACTTACttt            <  1:2482830/128‑1 (MQ=255)
                                                                                                                         ttttttt‑‑‑AAAAAAATTTAATTTATTTTATTAAACTTATATTTTTGTTTAATAAAATAGTAAAATAAATTAAATTTTAATAATAATTTAATTAAATATAAAAAAATTAAT‑GTTTTAAAAATTAAttttt          >  2:2069695/1‑128 (MQ=255)
                                                                                                                          tttttt‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTTTGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATTTAA‑TTTTTAAAACTTACtttttt         >  2:165069/1‑128 (MQ=255)
                                                                                                                            tttt‑‑‑AAAAAAATATAATTTATTTTAATAAACATAAATTTATTTTTAAAAAAAATTGTAAAAAAAGGTAATTTAAATAATAAATAAATTAAAAATATAAAAATTTAATTTTTTAAAAATTATttttttt        >  1:1705309/1‑127 (MQ=255)
                                                                                                                             ttt‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAAtatata                                       <  1:396313/96‑1 (MQ=255)
                                                                                                                                    cAAAAATATAATTTATTTGATTAAAAGTATATTTATGTTTAATAAAAATTGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAA‑GTTTTAAAACTTACTTTTTTGTTttta  <  1:1524575/128‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                
GAAAACTACTAGCACTTTTTTAAAAAATTTAAAATTAAAATAACTGAATTATTTTTCAAATTGTTAAATTATTTTCAAATCATTATCTATTAATCAATTTTATGCTC‑G‑‑TTTTTTTTTTTTTTTTT‑‑‑ACAAAAATATAATTTATTTGATTAAACGTATATTTATGTTTAATAAAAATGGAAAAGAAAGTGAATTGTCATAATAATTTAATTAAATATATAACAATGTAA‑GTTTTAAAACTTACTTTTTTGTTTTTA  >  CP016816/420127‑420380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑