Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9520CA32.3% 991.3 / 88.5 603intergenic (+336/+122)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (157/239);  new base A (150/39);  total (311/292)
Fisher's exact test for biased strand distribution p-value = 4.08e-20
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 625 total aligned reads displayed.

AGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGCTTG‑‑TTTTTTT‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGC  >  CP016816/203825‑204079
                                                                                                                                      |                                                                                                                                
 gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGCTTG‑‑TTTTTTT‑TTTTTTTTTTT‑AAAAAT‑AAAATTAATATTTGTATAAAACAAAACTATA‑TCa                                                                                                                                 >  1:2407984/1‑128 (MQ=255)
     aTGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGCTTGT‑TTTTTTT‑TTTTTTTTTTT‑AAAAAT‑AAAATTTATATTTTGATAAACCAAAAATTTA‑TAaaaa                                                                                                                              >  1:2156509/1‑128 (MQ=255)
       gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGCTTGTATTTTTTT‑TTTTTTTTTTT‑AAAAAT‑AAAAATAATTTTTTGATAAAACAAAAAAATA‑Taaaaaa                                                                                                                             >  1:217588/1‑128 (MQ=255)
          cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGCTTGT‑TTTTTTT‑TTTTTTTTTTT‑AAAAAT‑AAAATTAAGATTTGGATCAACCAAAACAATA‑TAAAAAAAAtt                                                                                                                         >  2:2009107/1‑128 (MQ=255)
           ttttttttttatttttaTTATTAAAATTAAAACTATTTAAAATTGTATTTTTTTTGTTTTT‑‑TTTTTTT‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑a                                                                                                                       <  1:263105/123‑1 (MQ=255)
            aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGCTTGTTTTTTTTT‑TTTTTTTTTTT‑AAAAAT‑AAAATTAAGATTTGGATCAACCAAATATATA‑TAAAAAAAAttt                                                                                                                        >  1:1777515/1‑127 (MQ=255)
            aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGCTTGTTTTTTTTT‑TTTTTTTTTGT‑AAAAAT‑AAAATTAATATTTTGATAAACCAAAACTATA‑TAAAAAAAATT‑a                                                                                                                       >  1:1149797/1‑128 (MQ=255)
                  tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGTCTTGTTTTTTTTT‑TTTTTTTTTTT‑AAAAAA‑AAAATTAATTTTTGGAATAACCAAAAATTTT‑TAAAAAAAATT‑aaaaaaa                                                                                                                 >  2:1220742/1‑128 (MQ=255)
                  tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGCTTG‑‑TTTTTTT‑TTTTTTTTTTT‑AAAAAA‑AAAATTAAATATTTTTTAAACCAAAA‑AATATTCAAAAAAAAT‑aaaaaaaaa                                                                                                               >  2:923713/1‑127 (MQ=255)
                      ttatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGCTTGT‑TTTTTTT‑TTTTTTTTTTT‑TAAAAT‑AAAATTAATATTTTGATAAACCAAAAATATA‑TAAAAAAAATT‑aaaaaaaaaatt                                                                                                            >  1:657946/1‑124 (MQ=255)
                      ttatACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGCTTG‑‑TTTTTTT‑TTTTTTTTTTT‑AAAATT‑AAAAGTAAGATTTGGTAAAACCAAAAATATT‑TAAAATAAATT‑AATCAAAAtatga                                                                                                           >  1:633060/1‑125 (MQ=255)
                      taaatcTTATAAAAATTACATCTGTTTCTAACTGTA‑TTTTTTAGGCTTT‑‑TTTTTTT‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAAtagtt                                                                                                           <  1:2141693/123‑1 (MQ=255)
                       tataCTTATCAACATTACAACGCTTTCAAAGTGGA‑TTTTTTAGGCTTG‑‑TTTTTTT‑TTTTTTTTTTT‑TAAAATAAAAAGTAATATTTGGTTCAACAAAAAAAATA‑TAAATAAAATT‑AAAAAAAAttgtt                                                                                                           >  2:2257139/1‑128 (MQ=255)
                            ttATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGCTTGT‑TTTTTTT‑TTTTTTTTTTT‑AAAAAT‑AAAAGTAAGATTTGGATAAACAAAAACTATT‑TCAAAAAAATT‑AAAAAAATtagtttagtt                                                                                                      >  1:896305/1‑128 (MQ=255)
                            ttATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGCTTGT‑TTTTTTT‑TTTTTTTTTGT‑AAAAAA‑AAAAATAATATTTTGAAACACCAAAAATTTA‑AAAAAAAAATT‑AAAAAAAAtagtttagtt                                                                                                      >  1:1534454/1‑128 (MQ=255)
                            ttATCAACATAACAACGCTTTCAAAGTGTA‑TTTTTTAGGCTTG‑‑TTTTTTTATTTTTTTTTTTAAAAAAT‑AAAATTAATATTTGTATCAACCAAAAAAAAT‑AAAAAAAAATT‑AAAAAAAAtatattaat                                                                                                       >  2:2301438/1‑121 (MQ=255)
                             tATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGCTTGTTTTTTTTT‑TTTTTTTTTTT‑AAAAAT‑TAAAATAATATTTGGTTAAACCAAAAATAAA‑TAAAAAAAATT‑AAAAAAAAaatttttttt                                                                                                      >  2:1279523/1‑124 (MQ=255)
                                cAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGCTTGT‑TTTTTTT‑TTTTTTTTTTT‑AAAAAT‑AAAATAAAAATATGATAAAACAAAAAAAAAA‑AAAAAAAAATT‑AAAAAAAAtatatattttagtt                                                                                                  >  2:687201/1‑116 (MQ=255)
                                    aTTACAACGCTTTCAAAGTGTA‑TTTTTTAGGCTTGT‑TTTTTTT‑TTTTTTTTTTT‑AAAAAA‑AAAATTAAAGTTTGTTTAAAACAAAAATATA‑GAAAAAAAATT‑AAAAAAAAAATTTTTGTTGAtttaaa                                                                                              >  1:245258/1‑125 (MQ=255)
                                     tttcAACGCTTTAAAAGTGTA‑TTTTTTATGCTTGT‑TTTTTTT‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCaa                                                                                             <  1:2060211/125‑1 (MQ=255)
                                       aCAACGCTTTCAAAGTGTA‑TTTTTTAGGCTTG‑‑TTTTTTT‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGTATTGGATCACCCCAAACAATA‑TACTAAAAATT‑TAAAAAAAaaaattagttttcgttgaaatc                                                                                          >  2:1384326/1‑116 (MQ=255)
                                           cGCTTTCAAAGTGTA‑TTTTTTAGGCTTG‑‑TTTTTTT‑TTTTTTTTTTA‑AAAAAT‑AAAATTAAGATTTTGTTCAACCAAAAATAAA‑TAAAAAAAATT‑AAAAAAACTTTTTTTGTTTAGTTTaaaaataaaa                                                                                      >  1:1551231/1‑122 (MQ=255)
                                              tttCAAAGTGTA‑TTTTTTAGGCTTGT‑TTTTTTT‑TTTTTTTTTTT‑AAAAAA‑AAAAGTAAAATTTGGAAAAAACAAAAATAAA‑ACAAAAAAATT‑AAAAAAAATAGTTTAGTTTAGTTTAAAATCTTCata                                                                                    >  2:1854146/1‑128 (MQ=255)
                                               ttCAAAGTGTA‑TTTTTTAGGCTTGT‑TTTTTTT‑TTTTTTTTTGT‑AAAAAT‑AAAATTAAGATTTGGATCAACCAAAAATTTA‑AAAAAAAAATT‑AAAAAAAATATATTAGTTGATTTTAAAATCTACaaat                                                                                   >  1:804721/1‑128 (MQ=255)
                                                 ttatttttttttttttTGGTTTG‑‑TTTTTTT‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCatatat                                                                                 <  2:51519/118‑1 (MQ=255)
                                                  atatgtttttttattAGGTTTGT‑TTTTTTT‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCatatat                                                                                 <  2:537988/119‑1 (MQ=255)
                                                   aattgtA‑TTTTTTTTGTTTGT‑TTTTTTT‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAg                                                                               <  2:2150818/125‑1 (MQ=255)
                                                         ttttttttTGTTTTT‑‑TTTTTTT‑TTTTTTTTTGT‑TATAAT‑AATAGTAAGATTTGGATCTACAAAAACTATA‑TCAAAATAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACaaa                                                                         <  2:376533/126‑1 (MQ=255)
                                                           ttttttAGGCTTG‑‑‑‑TTTTT‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCCACCAAAACTATA‑TAAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCAGCATATATAGTACAAACGaa                                                                     >  2:2058866/1‑128 (MQ=255)
                                                             ttttAGGCTTGTTTTTTTTT‑TTTTTTTTTGT‑AAAAAT‑AAAATTAATATTTGGATCAACCAAAAAAAAA‑ACAAAAAAATT‑AAAAAAAATATTTTAATTCATTTAAAATTATTCATATAAATTACAAAgg                                                                       >  2:1932619/1‑128 (MQ=255)
                                                             ttttAGGCTTGT‑TTTTTTT‑TTTTTTTTTTT‑AAAAAA‑AAAATTAAGATTTGGAAAAACCAAAACATTT‑TAAAAAAAATT‑AAAAAAAATAGTTTATTTTATTTTAAAAATTGCATATATA‑TACaaaagga                                                                     >  1:380594/1‑124 (MQ=255)
                                                              tttAGGCTTGT‑TTTTTTT‑TTTTTTTTTTT‑AAAAAT‑AAAAGTAATATTTTGATCAACCAAAAATTTT‑TAAAAAAAATT‑AAAAAAAATATTTTTGTTTTGTTTCAAATCTGAATTTTTAGATCAAAGTaa                                                                     >  1:203076/1‑128 (MQ=255)
                                                               ttAGGCTTG‑‑TTTTTTT‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAAAATGCTTATATATTAAAAAGGAAtt                                                                   >  1:1873473/1‑128 (MQ=255)
                                                                tAGGCTTGT‑TTTTTTT‑TTTTTTTTTTT‑AAAAAA‑AAAATTAAAATTTGGATAAACAAAAAATATA‑TAAAAAAAATT‑AAAAAAAAAATTTTAGTTTATTTTAAAATCTGCATATTTTTTACAAATGAAtt                                                                   >  1:1079967/1‑128 (MQ=255)
                                                                 ttattttttttttttt‑tttttttttGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACATAGGAAtt                                                                   <  2:1337571/119‑1 (MQ=255)
                                                                 aGGCTTGT‑TTTTTTT‑TTTTTTTTTTT‑AAAAAT‑AAAATTATTTTTTTTAGAAACAAAAAATATT‑AAAAAAAAATA‑AAAAAAAATATTTTAGTTTTGTTTCAAATCGTAAAATATATAAAAAAGTAAttt                                                                  >  1:2310161/1‑128 (MQ=255)
                                                                  gtgttG‑‑TTTTTTT‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                                <  2:2120336/125‑1 (MQ=255)
                                                                   tttttttttttttt‑tttttttttGT‑ATAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATTAAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                                  <  1:47265/121‑1 (MQ=255)
                                                                   tttatttttttttt‑ttttttttttt‑AAATAT‑TAAAGTAATTTTTGTATTAAAAAATACTATA‑TTAAAATAATT‑AAAAAAAATAGTTTAGTTGTGTTTAAAATCTGCATATTTAGTACAAATGAATTTa                                                                 <  2:1028100/121‑1 (MQ=255)
                                                                   gttttttttttttt‑tttttttttGT‑AATATT‑AATAGTAAGATTTGGATAAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                                                                 <  2:1689370/121‑1 (MQ=255)
                                                                    ctttttttttttt‑tttttttttGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                                <  1:2012163/122‑1 (MQ=255)
                                                                    cttgttttttttt‑ttttttttttt‑AAAAAT‑AAAATTAATATTTGGATAAACCAAAAAAATA‑TAAAAAAAATT‑AAAAAAAATATTTTAATTTATTTTAAAAAAAGAAATTATATTAAAAATGAATTTAt                                                                >  2:2400088/7‑128 (MQ=255)
                                                                     ttgttttttttt‑ttttttttttt‑AAAAAT‑AAAAGTAAGATTTGGATAAACCAAAAATATT‑TCAAAAAAATT‑AAAAAAAATATTTTATTTGTGTTTAAAAAATTCATATTTAGTAAAAATGAATTTATg                                                               >  1:509645/6‑128 (MQ=255)
                                                                     gttttttttttt‑ttttttttttt‑AAAAAT‑AAAATTAAGATTTGGTTCAACCAAAAATATT‑TAAAAAAAATT‑AAAAAAAATTTTTTTTTTTAGTTTAAAATATGAATATATTTTAAAAAGGAATTTAtt                                                               >  1:1447986/6‑127 (MQ=255)
                                                                      ttttttttttt‑ttttttttttt‑AAAAAT‑AAAAGTAAGATTTTGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGa                                                              <  1:1387953/124‑1 (MQ=255)
                                                                          ttttttt‑ttttttttttt‑AAAAAT‑AAAAGTTAGATTTGGATCAACCAAAAATATT‑TAAAAAAAATT‑AAAAAAAATAGTTTTTTTTAGTTTCAAATAGGAATATTTTTTACAAATGATTTTATtatata                                                          >  1:1123922/1‑126 (MQ=255)
                                                                            ttttt‑tttttttttGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                                                        <  1:1293186/128‑1 (MQ=255)
                                                                            ttttt‑tttttttttGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATCATAGaaa                                                        <  2:2216690/128‑1 (MQ=255)
                                                                              ttt‑tttttttttGT‑AATAAT‑TAAATTAAGATTTTGATAAAAAAAAAATATA‑TTAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa                                                      <  2:2501/128‑1 (MQ=255)
                                                                               tt‑tttttttttGT‑AAAATT‑AATAGTAAGATTTTGATCTAACAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaa                                                     <  2:1629163/128‑1 (MQ=255)
                                                                                t‑tttttttttGT‑TATAAT‑TTTTGTATGATTTTGATCATTAATAATTTTA‑TTAAAAAAATT‑AAAAATTATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa                                                    <  2:1727803/128‑1 (MQ=255)
                                                                                  tttttttttGT‑AAAAAT‑AAAAGTAAGATTTTGATCAACCAAAACTATA‑TAAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAAt                                                   <  2:1094118/128‑1 (MQ=255)
                                                                                  tttttttttGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAAt                                                   <  1:2349192/128‑1 (MQ=255)
                                                                                      ttttttT‑AATAAT‑AAAAGTAAGATTTGGATCAAACAAAACTATA‑TCAAAAAAATT‑AATAAATATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt                                               <  1:195795/128‑1 (MQ=255)
                                                                                       ttttGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                                              <  2:866911/128‑1 (MQ=255)
                                                                                         ttGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTAAA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg                                            <  2:2098463/128‑1 (MQ=255)
                                                                                              aaataT‑ATAAGTAATATTTTGATCAAAATAAACTATA‑TAAAAAAAATT‑AAAAAAAATAGTTCAGTTGAGTTTCAAATCTGCATAAATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaac                                        <  2:142406/128‑6 (MQ=255)
                                                                                              aaaaaT‑AAAAGTTAGATTTTGATCAAAAAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGa                                        <  1:742169/128‑1 (MQ=255)
                                                                                               aaaaT‑AAAAGTAAGATTTGGATCAAACAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                                       <  1:97590/128‑1 (MQ=255)
                                                                                                aaaT‑AAAAGTAAGATTTGTATCAACAAAAACTATA‑TC‑AAAATATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATaa                                     <  2:1870716/128‑1 (MQ=255)
                                                                                                 aaT‑AAAAGTAAGATTTTGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATaa                                     <  1:2068761/128‑1 (MQ=255)
                                                                                                   t‑AAAAGTAATATTTTGATTAAATAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                                   <  1:317151/128‑1 (MQ=255)
                                                                                                   t‑AAAAGTAAGATTTGTATTATCCAAAACTATA‑TCAATTAAATT‑AAATAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTAATGATAGAAAAAAATGGATTAGTTGATAATc                                   <  1:2232047/128‑1 (MQ=255)
                                                                                                   t‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                                   <  1:1979923/128‑1 (MQ=255)
                                                                                                     aaaaTTAAGATTTGTATTAAACAAAACTATA‑TAAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                                  <  1:1205816/128‑1 (MQ=255)
                                                                                                     aaaaGTAATATTTGGATCAAACAAAAATATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                                  <  1:1926988/128‑1 (MQ=255)
                                                                                                     aaaaGTAAGATTTTGATCAACCAAAACTATA‑TAAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                                  <  1:542778/128‑1 (MQ=255)
                                                                                                     aaaaGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                                  <  2:609814/128‑1 (MQ=255)
                                                                                                     aaaaGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                                  <  1:2088379/128‑1 (MQ=255)
                                                                                                      aaaGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                                 <  1:2267292/128‑1 (MQ=255)
                                                                                                       aaGTAATATTTTGATAAAAAAAAACTATT‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTTCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                                <  2:432434/128‑1 (MQ=255)
                                                                                                       aaGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCAAAAATAGTACAAAGGAATTAATGATAGAAAAAAATTGATTAGTTGATAATCCAt                                >  2:577399/1‑128 (MQ=255)
                                                                                                           aaGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt                            >  1:838228/1‑128 (MQ=255)
                                                                                                            aGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATATAAAAAAATAGATTAGTTGATAATCCAtttttt                           >  2:2318232/1‑128 (MQ=255)
                                                                                                            aGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGATGATAATCCAtttatt                           >  1:1004050/1‑128 (MQ=255)
                                                                                                            aGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATAAATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGATGATAATCCAttattt                           >  1:2114583/1‑128 (MQ=255)
                                                                                                             gATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa                          >  1:1724541/1‑128 (MQ=255)
                                                                                                             gATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa                          >  2:1835093/1‑128 (MQ=255)
                                                                                                               tttGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt                        >  1:298081/1‑128 (MQ=255)
                                                                                                                 tGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATATTTTAGTTGAGTTTCAAATCTTCATATATAGTACAAAGGAATTTATTATATAAAAAAATGAATTATTTGATAATCAATTTTTTAAttt                      >  1:1252560/1‑128 (MQ=255)
                                                                                                                 tGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTa                          >  2:156408/1‑124 (MQ=255)
                                                                                                                 tGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttt                      >  2:1509811/1‑128 (MQ=255)
                                                                                                                    aTCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGt                   >  2:764735/1‑128 (MQ=255)
                                                                                                                     tcaaatataaatata‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGtt                  <  2:795232/117‑1 (MQ=255)
                                                                                                                      tatacAAAAATATA‑TCAAAATATTT‑AAAATATATAGTTTATTTGATTTTCAAATATGCATTTATATTACTAAGGAATTTATGATATAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGttt                 <  1:2381646/124‑1 (MQ=255)
                                                                                                                      cAACTATAACTATA‑TCAAATAAATT‑AAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGttt                 <  1:997751/128‑1 (MQ=255)
                                                                                                                      aaaaaataaatata‑taAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGttt                 <  2:1122710/118‑1 (MQ=255)
                                                                                                                         ttaataCTATA‑TAAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttatt              <  1:2198153/123‑1 (MQ=255)
                                                                                                                           aaaaATATA‑TCAAATAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaa            <  1:1627261/128‑1 (MQ=255)
                                                                                                                           aaaaATATA‑TAAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaa            <  2:1978626/128‑1 (MQ=255)
                                                                                                                            aaaCTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaaa           >  2:323063/1‑128 (MQ=255)
                                                                                                                            aaaCTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGATTATTaaa           >  2:1369351/1‑128 (MQ=255)
                                                                                                                                tata‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAattat       >  1:1498323/1‑128 (MQ=255)
                                                                                                                                 ata‑tCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGATTTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAattatt      >  2:238369/1‑128 (MQ=255)
                                                                                                                                 ata‑tCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAattatt      >  1:1914562/1‑128 (MQ=255)
                                                                                                                                  ta‑tCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                                >  2:2024475/1‑101 (MQ=255)
                                                                                                                                  ta‑tCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAAttatta     >  2:2361053/1‑128 (MQ=255)
                                                                                                                                   a‑tCAAAAATATT‑AAAAAAAATAGTTTAGTTGAGTTTTATATCTGAATATATAGTAGAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTaa    <  1:183727/128‑1 (MQ=255)
                                                                                                                                   a‑tCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaac                                        >  1:1171521/1‑87 (MQ=255)
                                                                                                                                   a‑tCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaac                                        <  2:1171521/92‑6 (MQ=255)
                                                                                                                                      |                                                                                                                                
AGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTA‑TTTTTTAGGCTTG‑‑TTTTTTT‑TTTTTTTTTGT‑AAAAAT‑AAAAGTAAGATTTGGATCAACCAAAACTATA‑TCAAAAAAATT‑AAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTATTAAGC  >  CP016816/203825‑204079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑